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LitCovid-OGER-BB

Id Subject Object Predicate Lexical cue
T1 7-15 SP_7 denotes COVID-19
T2 111-119 SP_7 denotes COVID-19
T3 199-212 UBERON:0002405 denotes immune system
T4 216-223 GO:0065007 denotes control
T5 228-233 NCBITaxon:10239 denotes virus
T6 262-270 SP_7 denotes COVID-19
T7 503-511 SP_7 denotes COVID-19
T8 665-671 UBERON:0000310 denotes breast
T9 756-764 UBERON:0001637 denotes arterial
T10 811-820 DG_13 denotes darunavir
T11 821-831 DG_40 denotes cobicistat
T12 836-854 DG_20 denotes hydroxychloroquine
T13 836-854 CHEBI:5801 denotes hydroxychloroquine
T14 836-854 CHEBI:5801 denotes hydroxychloroquine
T15 1166-1174 SP_7 denotes COVID-19
T16 1235-1241 UBERON:0002405 denotes immune
T17 1235-1250 GO:0006955 denotes immune response
T18 1312-1322 GO:0065007 denotes controlled
T19 1341-1347 UBERON:0002405 denotes immune
T20 1366-1376 SP_7 denotes SARS CoV-2

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 199-212 Body_part denotes immune system http://purl.org/sig/ont/fma/fma9825
T2 665-671 Body_part denotes breast http://purl.org/sig/ont/fma/fma9601

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 199-212 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T2 665-671 Body_part denotes breast http://purl.obolibrary.org/obo/UBERON_0000310

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 7-15 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 40-46 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T3 88-107 Disease denotes Respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T4 111-119 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 262-270 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 503-511 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 665-678 Disease denotes breast cancer http://purl.obolibrary.org/obo/MONDO_0007254
T8 672-678 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T9 765-777 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T10 1166-1174 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 1366-1370 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T12 1377-1386 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 70-71 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 123-124 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 159-162 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T4 182-183 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 199-212 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system
T6 228-233 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T7 351-352 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T8 569-570 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 586-587 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 665-671 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
T11 732-733 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 756-764 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T13 756-764 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T14 1221-1222 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 1310-1311 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 623-634 Chemical denotes fulvestrant http://purl.obolibrary.org/obo/CHEBI_31638
T2 811-820 Chemical denotes darunavir http://purl.obolibrary.org/obo/CHEBI_367163
T3 821-831 Chemical denotes cobicistat http://purl.obolibrary.org/obo/CHEBI_72291
T4 836-854 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 40-46 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T2 88-107 Phenotype denotes Respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T3 467-475 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T4 480-485 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T5 665-678 Phenotype denotes breast cancer http://purl.obolibrary.org/obo/HP_0003002
T6 765-777 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1235-1250 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
3 7-15 Disease denotes COVID-19 MESH:C000657245
4 40-46 Disease denotes cancer MESH:D009369
5 47-54 Species denotes patient Tax:9606
24 88-107 Disease denotes Respiratory failure MESH:D012131
25 111-119 Disease denotes COVID-19 MESH:C000657245
26 262-270 Disease denotes COVID-19 MESH:C000657245
27 302-307 Species denotes women Tax:9606
28 467-475 Disease denotes dyspnoea MESH:D004417
29 480-485 Disease denotes fever MESH:D005334
30 503-511 Disease denotes COVID-19 MESH:C000657245
31 523-530 Species denotes patient Tax:9606
32 639-650 Chemical denotes abemaciclid
33 665-678 Disease denotes breast cancer MESH:D001943
34 693-700 Species denotes patient Tax:9606
35 765-777 Disease denotes hypertension MESH:D006973
36 784-792 Species denotes patients Tax:9606
37 811-820 Chemical denotes darunavir MESH:D000069454
38 821-831 Chemical denotes cobicistat MESH:D000069547
39 836-854 Chemical denotes hydroxychloroquine MESH:D006886
40 1166-1174 Disease denotes COVID-19 MESH:C000657245
41 1371-1386 Disease denotes CoV-2 infection MESH:C000657245

hydroxychloroquine

Id Subject Object Predicate Lexical cue hp_id
T1 40-46 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T2 88-107 Phenotype denotes Respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T3 467-475 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T4 480-485 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T5 665-678 Phenotype denotes breast cancer http://purl.obolibrary.org/obo/HP_0003002
T6 765-777 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-87 Sentence denotes Benign COVID-19 in an immunocompromised cancer patient -  the case of a married couple.
T2 88-234 Sentence denotes Respiratory failure in COVID-19 is a common feature in fatal cases and has been considered as a failure of the immune system to control the virus.
T3 235-350 Sentence denotes Here we report the case of COVID-19 affecting an immunocompromised women and her presumably immunocompetent spouse.
T4 351-512 Sentence denotes A married couple (age 60 years) was simultaneously admitted to the emergency department on 10 March 2020 because of dyspnoea and fever, consistent with COVID-19.
T5 513-778 Sentence denotes The wife (patient 1) was partially immunocompromised as a consequence of a recently started chemotherapy with fulvestrant and abemaciclid for recurring breast cancer, her husband (patient 2) had been healthy except for a history of controlled arterial hypertension.
T6 779-855 Sentence denotes Both patients were treated with darunavir/cobicistat and hydroxychloroquine.
T7 856-952 Sentence denotes The clinical course of the immunocompromised partner was benign, without need of intensive care.
T8 953-1013 Sentence denotes She was able to leave the hospital on day 6 after admission.
T9 1014-1123 Sentence denotes In contrast, her husband needed intensive care and his recovery was slow, although eventually successful too.
T10 1124-1387 Sentence denotes These findings suggest that the course of COVID-19 is not necessarily ominous in the presence of a compromised immune response and tend to reinforce the emerging therapeutic concepts of a controlled mitigation of the immune cascade following SARS CoV-2 infection.