PubMed:32251842
Annnotations
LitCovid-OGER-BB
{"project":"LitCovid-OGER-BB","denotations":[{"id":"T1","span":{"begin":67,"end":78},"obj":"NCBITaxon:11118"},{"id":"T2","span":{"begin":90,"end":98},"obj":"SP_7"},{"id":"T3","span":{"begin":239,"end":244},"obj":"NCBITaxon:1"},{"id":"T4","span":{"begin":259,"end":269},"obj":"SP_7"},{"id":"T5","span":{"begin":446,"end":454},"obj":"SP_7"},{"id":"T6","span":{"begin":569,"end":574},"obj":"NCBITaxon:1"},{"id":"T7","span":{"begin":589,"end":599},"obj":"SP_7"},{"id":"T8","span":{"begin":663,"end":668},"obj":"NCBITaxon:1"},{"id":"T9","span":{"begin":758,"end":763},"obj":"NCBITaxon:1"},{"id":"T10","span":{"begin":1155,"end":1160},"obj":"UBERON:0001443"},{"id":"T11","span":{"begin":1346,"end":1360},"obj":"UBERON:0004535"},{"id":"T12","span":{"begin":1407,"end":1410},"obj":"CL:0000738"},{"id":"T13","span":{"begin":1408,"end":1409},"obj":"UBERON:0000178"},{"id":"T14","span":{"begin":1561,"end":1566},"obj":"NCBITaxon:1"},{"id":"T15","span":{"begin":1629,"end":1634},"obj":"NCBITaxon:1"},{"id":"T16","span":{"begin":1701,"end":1709},"obj":"SP_7"},{"id":"T17","span":{"begin":1781,"end":1789},"obj":"SP_7"},{"id":"T18","span":{"begin":1828,"end":1832},"obj":"UBERON:0000165"}],"namespaces":[{"prefix":"NCBITaxon","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"}],"text":"Clinical characteristics of non-critically ill patients with novel coronavirus infection (COVID-19) in a Fangcang Hospital.\nOBJECTIVES: Describe the clinical characteristics of patients in Fangcang Hospital.\nMETHODS: Non-critically ill patients with positive SARS-CoV-2 RT-PCR tests admitted to Dongxihu 'Fangcang' Hospital between February 7th and 12th were included, which was promptly constructed because of the rapid, exponential increase in COVID-19 patients in Wuhan, China; clinical course through February 22nd was recorded.\nRESULTS: 1012 non-critically ill patients with positive SARS-CoV-2 RT-PCR tests were included in the study. 30 (of 1012, 3.0%) patients were asymptomatic on admission. During hospitalization, 16 of 30 (53.3%) asymptomatic patients suffered from different symptoms. Fourteen of 1012 patients (1.4%) remained asymptomatic from exposure to the end of follow-up, with a median duration of 24 days (IQR 22-27). Fever (761 of 1012, 75.2%) and cough (531 of 1012, 52.4%) were the most common symptoms. Small patchy opacities (355 of 917, 38.7%)and ground-glass opacities (508 of 917, 55.4%) were common imaging manifestations in chest CT scan. One hundred patients (9.9%) were transferred to designated hospitals due to aggravation of illness. Diarrhea emerged in 152 of 1012 patients (15.0%). Male, elder age, diabetes cardiovascular diseases, chills, dyspnea, SO2 value of ≤93%, WBC counts of \u003e10 ×109/L and large consolidated opacity on CT images were all risk factors for aggravation of illness.\nCONCLUSIONS: Non-critically ill patients had different clinical characteristics than critically ill patients. Asymptomatic infections only accounted for a small proportion of COVID-19. Although with a low incidence, diarrhea was observed in patients with COVID-19, indicating the possibility of faecal-oral transmission."}
LitCovid-sentences-v1
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LitCovid-TimeML
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Asymptomatic infections only accounted for a small proportion of COVID-19. Although with a low incidence, diarrhea was observed in patients with COVID-19, indicating the possibility of faecal-oral transmission."}
LitCovid-PD-HP-v1
{"project":"LitCovid-PD-HP-v1","denotations":[{"id":"T1","span":{"begin":939,"end":944},"obj":"Phenotype"},{"id":"T2","span":{"begin":970,"end":975},"obj":"Phenotype"},{"id":"T3","span":{"begin":1270,"end":1278},"obj":"Phenotype"},{"id":"T4","span":{"begin":1346,"end":1369},"obj":"Phenotype"},{"id":"T5","span":{"begin":1371,"end":1377},"obj":"Phenotype"},{"id":"T6","span":{"begin":1379,"end":1386},"obj":"Phenotype"},{"id":"T7","span":{"begin":1742,"end":1750},"obj":"Phenotype"}],"attributes":[{"id":"A5","pred":"hp_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/HP_0025143"},{"id":"A6","pred":"hp_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/HP_0002094"},{"id":"A4","pred":"hp_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/HP_0001626"},{"id":"A2","pred":"hp_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/HP_0012735"},{"id":"A7","pred":"hp_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/HP_0002014"},{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A3","pred":"hp_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/HP_0002014"}],"text":"Clinical characteristics of non-critically ill patients with novel coronavirus infection (COVID-19) in a Fangcang Hospital.\nOBJECTIVES: Describe the clinical characteristics of patients in Fangcang Hospital.\nMETHODS: Non-critically ill patients with positive SARS-CoV-2 RT-PCR tests admitted to Dongxihu 'Fangcang' Hospital between February 7th and 12th were included, which was promptly constructed because of the rapid, exponential increase in COVID-19 patients in Wuhan, China; clinical course through February 22nd was recorded.\nRESULTS: 1012 non-critically ill patients with positive SARS-CoV-2 RT-PCR tests were included in the study. 30 (of 1012, 3.0%) patients were asymptomatic on admission. During hospitalization, 16 of 30 (53.3%) asymptomatic patients suffered from different symptoms. Fourteen of 1012 patients (1.4%) remained asymptomatic from exposure to the end of follow-up, with a median duration of 24 days (IQR 22-27). Fever (761 of 1012, 75.2%) and cough (531 of 1012, 52.4%) were the most common symptoms. Small patchy opacities (355 of 917, 38.7%)and ground-glass opacities (508 of 917, 55.4%) were common imaging manifestations in chest CT scan. One hundred patients (9.9%) were transferred to designated hospitals due to aggravation of illness. Diarrhea emerged in 152 of 1012 patients (15.0%). Male, elder age, diabetes cardiovascular diseases, chills, dyspnea, SO2 value of ≤93%, WBC counts of \u003e10 ×109/L and large consolidated opacity on CT images were all risk factors for aggravation of illness.\nCONCLUSIONS: Non-critically ill patients had different clinical characteristics than critically ill patients. Asymptomatic infections only accounted for a small proportion of COVID-19. Although with a low incidence, diarrhea was observed in patients with COVID-19, indicating the possibility of faecal-oral transmission."}
LitCovid-PD-MONDO-v1
{"project":"LitCovid-PD-MONDO-v1","denotations":[{"id":"T1","span":{"begin":79,"end":88},"obj":"Disease"},{"id":"T2","span":{"begin":90,"end":98},"obj":"Disease"},{"id":"T3","span":{"begin":259,"end":267},"obj":"Disease"},{"id":"T4","span":{"begin":446,"end":454},"obj":"Disease"},{"id":"T5","span":{"begin":589,"end":597},"obj":"Disease"},{"id":"T6","span":{"begin":1270,"end":1278},"obj":"Disease"},{"id":"T7","span":{"begin":1337,"end":1345},"obj":"Disease"},{"id":"T8","span":{"begin":1346,"end":1369},"obj":"Disease"},{"id":"T9","span":{"begin":1649,"end":1659},"obj":"Disease"},{"id":"T10","span":{"begin":1701,"end":1709},"obj":"Disease"},{"id":"T11","span":{"begin":1742,"end":1750},"obj":"Disease"},{"id":"T12","span":{"begin":1781,"end":1789},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A3","pred":"mondo_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0005015"},{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0004995"},{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A11","pred":"mondo_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"Clinical characteristics of non-critically ill patients with novel coronavirus infection (COVID-19) in a Fangcang Hospital.\nOBJECTIVES: Describe the clinical characteristics of patients in Fangcang Hospital.\nMETHODS: Non-critically ill patients with positive SARS-CoV-2 RT-PCR tests admitted to Dongxihu 'Fangcang' Hospital between February 7th and 12th were included, which was promptly constructed because of the rapid, exponential increase in COVID-19 patients in Wuhan, China; clinical course through February 22nd was recorded.\nRESULTS: 1012 non-critically ill patients with positive SARS-CoV-2 RT-PCR tests were included in the study. 30 (of 1012, 3.0%) patients were asymptomatic on admission. During hospitalization, 16 of 30 (53.3%) asymptomatic patients suffered from different symptoms. Fourteen of 1012 patients (1.4%) remained asymptomatic from exposure to the end of follow-up, with a median duration of 24 days (IQR 22-27). Fever (761 of 1012, 75.2%) and cough (531 of 1012, 52.4%) were the most common symptoms. Small patchy opacities (355 of 917, 38.7%)and ground-glass opacities (508 of 917, 55.4%) were common imaging manifestations in chest CT scan. One hundred patients (9.9%) were transferred to designated hospitals due to aggravation of illness. Diarrhea emerged in 152 of 1012 patients (15.0%). Male, elder age, diabetes cardiovascular diseases, chills, dyspnea, SO2 value of ≤93%, WBC counts of \u003e10 ×109/L and large consolidated opacity on CT images were all risk factors for aggravation of illness.\nCONCLUSIONS: Non-critically ill patients had different clinical characteristics than critically ill patients. Asymptomatic infections only accounted for a small proportion of COVID-19. Although with a low incidence, diarrhea was observed in patients with COVID-19, indicating the possibility of faecal-oral transmission."}
LitCovid-PD-FMA-UBERON-v1
{"project":"LitCovid-PD-FMA-UBERON-v1","denotations":[{"id":"T1","span":{"begin":1155,"end":1160},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma9576"},{"id":"A60225","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"}],"text":"Clinical characteristics of non-critically ill patients with novel coronavirus infection (COVID-19) in a Fangcang Hospital.\nOBJECTIVES: Describe the clinical characteristics of patients in Fangcang Hospital.\nMETHODS: Non-critically ill patients with positive SARS-CoV-2 RT-PCR tests admitted to Dongxihu 'Fangcang' Hospital between February 7th and 12th were included, which was promptly constructed because of the rapid, exponential increase in COVID-19 patients in Wuhan, China; clinical course through February 22nd was recorded.\nRESULTS: 1012 non-critically ill patients with positive SARS-CoV-2 RT-PCR tests were included in the study. 30 (of 1012, 3.0%) patients were asymptomatic on admission. During hospitalization, 16 of 30 (53.3%) asymptomatic patients suffered from different symptoms. Fourteen of 1012 patients (1.4%) remained asymptomatic from exposure to the end of follow-up, with a median duration of 24 days (IQR 22-27). Fever (761 of 1012, 75.2%) and cough (531 of 1012, 52.4%) were the most common symptoms. Small patchy opacities (355 of 917, 38.7%)and ground-glass opacities (508 of 917, 55.4%) were common imaging manifestations in chest CT scan. One hundred patients (9.9%) were transferred to designated hospitals due to aggravation of illness. Diarrhea emerged in 152 of 1012 patients (15.0%). Male, elder age, diabetes cardiovascular diseases, chills, dyspnea, SO2 value of ≤93%, WBC counts of \u003e10 ×109/L and large consolidated opacity on CT images were all risk factors for aggravation of illness.\nCONCLUSIONS: Non-critically ill patients had different clinical characteristics than critically ill patients. Asymptomatic infections only accounted for a small proportion of COVID-19. Although with a low incidence, diarrhea was observed in patients with COVID-19, indicating the possibility of faecal-oral transmission."}
MeasurableQuantitativeAnnotation
{"project":"MeasurableQuantitativeAnnotation","denotations":[{"id":"E1","span":{"begin":939,"end":944},"obj":"entity"},{"id":"E2","span":{"begin":970,"end":975},"obj":"entity"},{"id":"N1","span":{"begin":946,"end":949},"obj":"num"},{"id":"N2","span":{"begin":959,"end":963},"obj":"num"},{"id":"N3","span":{"begin":977,"end":980},"obj":"num"},{"id":"N4","span":{"begin":990,"end":994},"obj":"num"},{"id":"U1","span":{"begin":963,"end":964},"obj":"unit"},{"id":"U2","span":{"begin":994,"end":995},"obj":"unit"},{"id":"E1","span":{"begin":1028,"end":1050},"obj":"entity"},{"id":"E2","span":{"begin":1074,"end":1096},"obj":"entity"},{"id":"N1","span":{"begin":1052,"end":1055},"obj":"num"},{"id":"N2","span":{"begin":1064,"end":1068},"obj":"num"},{"id":"N3","span":{"begin":1098,"end":1101},"obj":"num"},{"id":"N4","span":{"begin":1110,"end":1114},"obj":"num"},{"id":"U1","span":{"begin":1068,"end":1069},"obj":"unit"},{"id":"U2","span":{"begin":1114,"end":1115},"obj":"unit"},{"id":"E1","span":{"begin":1270,"end":1278},"obj":"entity"},{"id":"N1","span":{"begin":1290,"end":1293},"obj":"num"},{"id":"N2","span":{"begin":1312,"end":1316},"obj":"num"},{"id":"U1","span":{"begin":1316,"end":1317},"obj":"unit"}],"relations":[{"id":"R1","pred":"associateWith","subj":"E1","obj":"N1"},{"id":"R2","pred":"associateWith","subj":"E1","obj":"N2"},{"id":"R3","pred":"associateOf","subj":"N2","obj":"U1"},{"id":"R4","pred":"associateWith","subj":"E2","obj":"N3"},{"id":"R5","pred":"associateWith","subj":"E2","obj":"N4"},{"id":"R6","pred":"associateOf","subj":"N4","obj":"U2"},{"id":"R1","pred":"associateWith","subj":"E1","obj":"N1"},{"id":"R2","pred":"associateWith","subj":"E1","obj":"N2"},{"id":"R3","pred":"associateOf","subj":"N2","obj":"U1"},{"id":"R4","pred":"associateWith","subj":"E2","obj":"N3"},{"id":"R5","pred":"associateWith","subj":"E2","obj":"N4"},{"id":"R6","pred":"associateOf","subj":"N4","obj":"U2"},{"id":"R1","pred":"associateWith","subj":"E1","obj":"N1"},{"id":"R2","pred":"associateWith","subj":"E1","obj":"N2"},{"id":"R3","pred":"associateOf","subj":"N2","obj":"U1"}],"text":"Clinical characteristics of non-critically ill patients with novel coronavirus infection (COVID-19) in a Fangcang Hospital.\nOBJECTIVES: Describe the clinical characteristics of patients in Fangcang Hospital.\nMETHODS: Non-critically ill patients with positive SARS-CoV-2 RT-PCR tests admitted to Dongxihu 'Fangcang' Hospital between February 7th and 12th were included, which was promptly constructed because of the rapid, exponential increase in COVID-19 patients in Wuhan, China; clinical course through February 22nd was recorded.\nRESULTS: 1012 non-critically ill patients with positive SARS-CoV-2 RT-PCR tests were included in the study. 30 (of 1012, 3.0%) patients were asymptomatic on admission. During hospitalization, 16 of 30 (53.3%) asymptomatic patients suffered from different symptoms. Fourteen of 1012 patients (1.4%) remained asymptomatic from exposure to the end of follow-up, with a median duration of 24 days (IQR 22-27). Fever (761 of 1012, 75.2%) and cough (531 of 1012, 52.4%) were the most common symptoms. Small patchy opacities (355 of 917, 38.7%)and ground-glass opacities (508 of 917, 55.4%) were common imaging manifestations in chest CT scan. One hundred patients (9.9%) were transferred to designated hospitals due to aggravation of illness. Diarrhea emerged in 152 of 1012 patients (15.0%). Male, elder age, diabetes cardiovascular diseases, chills, dyspnea, SO2 value of ≤93%, WBC counts of \u003e10 ×109/L and large consolidated opacity on CT images were all risk factors for aggravation of illness.\nCONCLUSIONS: Non-critically ill patients had different clinical characteristics than critically ill patients. Asymptomatic infections only accounted for a small proportion of COVID-19. Although with a low incidence, diarrhea was observed in patients with COVID-19, indicating the possibility of faecal-oral transmission."}