PubMed:32251668 JSONTXT

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    LitCovid-OGER-BB

    {"project":"LitCovid-OGER-BB","denotations":[{"id":"T1","span":{"begin":0,"end":16},"obj":"UBERON:0005409"},{"id":"T2","span":{"begin":35,"end":45},"obj":"SP_7"},{"id":"T3","span":{"begin":189,"end":199},"obj":"SP_7"},{"id":"T4","span":{"begin":207,"end":215},"obj":"SP_7"},{"id":"T5","span":{"begin":256,"end":267},"obj":"UBERON:0001004"},{"id":"T6","span":{"begin":273,"end":289},"obj":"UBERON:0005409"},{"id":"T7","span":{"begin":322,"end":327},"obj":"NCBITaxon:10239"},{"id":"T8","span":{"begin":337,"end":342},"obj":"UBERON:0001988"},{"id":"T9","span":{"begin":408,"end":424},"obj":"UBERON:0005409"},{"id":"T10","span":{"begin":451,"end":456},"obj":"NCBITaxon:10239"},{"id":"T11","span":{"begin":460,"end":465},"obj":"UBERON:0001988"},{"id":"T12","span":{"begin":523,"end":531},"obj":"SP_7"},{"id":"T13","span":{"begin":606,"end":614},"obj":"SP_7"},{"id":"T14","span":{"begin":937,"end":953},"obj":"UBERON:0005409"},{"id":"T15","span":{"begin":1006,"end":1015},"obj":"UBERON:0000916"},{"id":"T16","span":{"begin":1102,"end":1110},"obj":"SP_7"},{"id":"T17","span":{"begin":1149,"end":1165},"obj":"UBERON:0005409"},{"id":"T18","span":{"begin":1202,"end":1207},"obj":"UBERON:0001988"},{"id":"T19","span":{"begin":1233,"end":1238},"obj":"NCBITaxon:10239"},{"id":"T20","span":{"begin":1244,"end":1249},"obj":"UBERON:0001988"},{"id":"T21","span":{"begin":1250,"end":1255},"obj":"NCBITaxon:10239"},{"id":"T22","span":{"begin":1363,"end":1368},"obj":"UBERON:0000981"},{"id":"T23","span":{"begin":1369,"end":1374},"obj":"NCBITaxon:10239"},{"id":"T24","span":{"begin":1566,"end":1582},"obj":"UBERON:0005409"},{"id":"T25","span":{"begin":1659,"end":1667},"obj":"SP_7"},{"id":"T26","span":{"begin":1672,"end":1688},"obj":"UBERON:0005409"},{"id":"T27","span":{"begin":1753,"end":1761},"obj":"SP_7"},{"id":"T28","span":{"begin":1766,"end":1782},"obj":"UBERON:0005409"},{"id":"T29","span":{"begin":1861,"end":1866},"obj":"UBERON:0001988"},{"id":"T30","span":{"begin":1898,"end":1903},"obj":"NCBITaxon:10239"},{"id":"T31","span":{"begin":1998,"end":2003},"obj":"NCBITaxon:10239"},{"id":"T32","span":{"begin":2009,"end":2020},"obj":"UBERON:0001004"},{"id":"T33","span":{"begin":2055,"end":2060},"obj":"NCBITaxon:10239"},{"id":"T34","span":{"begin":2163,"end":2171},"obj":"SP_7"},{"id":"T35","span":{"begin":2260,"end":2268},"obj":"SP_7"},{"id":"T36","span":{"begin":2273,"end":2289},"obj":"UBERON:0005409"},{"id":"T37","span":{"begin":2326,"end":2331},"obj":"UBERON:0001988"},{"id":"T38","span":{"begin":2368,"end":2373},"obj":"UBERON:0001988"},{"id":"T39","span":{"begin":2390,"end":2401},"obj":"UBERON:0001004"},{"id":"T40","span":{"begin":2494,"end":2499},"obj":"UBERON:0001088"},{"id":"T41","span":{"begin":2561,"end":2569},"obj":"SP_7"}],"namespaces":[{"prefix":"NCBITaxon","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"}],"text":"Gastrointestinal Manifestations of SARS-CoV-2 Infection and Virus Load in Fecal Samples from the Hong Kong Cohort and Systematic Review and Meta-analysis.\nBACKGROUND \u0026 AIMS: Infection with SARS-CoV-2 causes COVID-19, which has been characterized by fever, respiratory, and gastrointestinal symptoms as well as shedding of virus RNA into feces. We performed a systematic review and meta-analysis of published gastrointestinal symptoms and detection of virus in stool, and also summarized data from a cohort of patients with COVID-19 in Hong Kong.\nMETHODS: We collected data from the cohort of patients with COVID-19 in Hong Kong (n=59; diagnosis from February 2 through Feb 29, 2020), and searched PubMed, Embase, Cochrane and three Chinese databases through March 11, 2020 according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. We analyzed pooled data on the prevalence of overall and individual gastrointestinal symptoms (anorexia, nausea, vomiting, diarrhea, and abdominal pain or discomfort) using a random effects model.\nRESULTS: Among the 59 patients with COVID-19 in Hong Kong, 15 patients (25.4%) had gastrointestinal symptoms and 9 patients (15.3%) had stool that tested positive for virus RNA. Stool viral RNA was detected in 38.5% and 8.7% among those with and without diarrhea, respectively (P=.02). The median fecal viral load was 5.1 log10cpm in patients with diarrhea vs 3.9 log10cpm in patients without diarrhea (P=.06). In a meta-analysis of 60 studies, comprising 4243 patients, the pooled prevalence of all gastrointestinal symptoms was 17.6% (95% CI, 12.3%-24.5%); 11.8% of patients with non-severe COVID-19 had gastrointestinal symptoms (95% CI, 4.1%-29.1%) and 17.1% of patients with severe COVID-19 had gastrointestinal symptoms (95% CI, 6.9%-36.7%). In the meta-analysis, the pooled prevalence of stool samples that were positive for virus RNA was 48.1% (95% CI, 38.3%-57.9%); of these samples, 70.3% of those collected after loss of virus from respiratory specimens tested positive for the virus (95% CI, 49.6%-85.1%).\nCONCLUSIONS: In an analysis of data from the Hong Kong cohort of patients with COVID-19 and a meta-analysis of findings from publications, we found that 17.6% of patients with COVID-19 had gastrointestinal symptoms. Virus RNA was detected in stool samples from 48.1% patients-even in stool collected after respiratory samples tested negative. Healthcare workers should therefore exercise caution in collecting fecal samples or performing endoscopic procedures in patients with COVID-19-even during patient recovery."}

    LitCovid-sentences-v1

    {"project":"LitCovid-sentences-v1","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":154},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":155,"end":173},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":174,"end":343},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":344,"end":545},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":546,"end":554},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":555,"end":868},"obj":"Sentence"},{"id":"TextSentencer_T7","span":{"begin":869,"end":1065},"obj":"Sentence"},{"id":"TextSentencer_T8","span":{"begin":1066,"end":1074},"obj":"Sentence"},{"id":"TextSentencer_T9","span":{"begin":1075,"end":1243},"obj":"Sentence"},{"id":"TextSentencer_T10","span":{"begin":1244,"end":1351},"obj":"Sentence"},{"id":"TextSentencer_T11","span":{"begin":1352,"end":1476},"obj":"Sentence"},{"id":"TextSentencer_T12","span":{"begin":1477,"end":1813},"obj":"Sentence"},{"id":"TextSentencer_T13","span":{"begin":1814,"end":2083},"obj":"Sentence"},{"id":"TextSentencer_T14","span":{"begin":2084,"end":2096},"obj":"Sentence"},{"id":"TextSentencer_T15","span":{"begin":2097,"end":2299},"obj":"Sentence"},{"id":"TextSentencer_T16","span":{"begin":2300,"end":2426},"obj":"Sentence"},{"id":"TextSentencer_T17","span":{"begin":2427,"end":2599},"obj":"Sentence"}],"text":"Gastrointestinal Manifestations of SARS-CoV-2 Infection and Virus Load in Fecal Samples from the Hong Kong Cohort and Systematic Review and Meta-analysis.\nBACKGROUND \u0026 AIMS: Infection with SARS-CoV-2 causes COVID-19, which has been characterized by fever, respiratory, and gastrointestinal symptoms as well as shedding of virus RNA into feces. We performed a systematic review and meta-analysis of published gastrointestinal symptoms and detection of virus in stool, and also summarized data from a cohort of patients with COVID-19 in Hong Kong.\nMETHODS: We collected data from the cohort of patients with COVID-19 in Hong Kong (n=59; diagnosis from February 2 through Feb 29, 2020), and searched PubMed, Embase, Cochrane and three Chinese databases through March 11, 2020 according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. We analyzed pooled data on the prevalence of overall and individual gastrointestinal symptoms (anorexia, nausea, vomiting, diarrhea, and abdominal pain or discomfort) using a random effects model.\nRESULTS: Among the 59 patients with COVID-19 in Hong Kong, 15 patients (25.4%) had gastrointestinal symptoms and 9 patients (15.3%) had stool that tested positive for virus RNA. Stool viral RNA was detected in 38.5% and 8.7% among those with and without diarrhea, respectively (P=.02). The median fecal viral load was 5.1 log10cpm in patients with diarrhea vs 3.9 log10cpm in patients without diarrhea (P=.06). In a meta-analysis of 60 studies, comprising 4243 patients, the pooled prevalence of all gastrointestinal symptoms was 17.6% (95% CI, 12.3%-24.5%); 11.8% of patients with non-severe COVID-19 had gastrointestinal symptoms (95% CI, 4.1%-29.1%) and 17.1% of patients with severe COVID-19 had gastrointestinal symptoms (95% CI, 6.9%-36.7%). In the meta-analysis, the pooled prevalence of stool samples that were positive for virus RNA was 48.1% (95% CI, 38.3%-57.9%); of these samples, 70.3% of those collected after loss of virus from respiratory specimens tested positive for the virus (95% CI, 49.6%-85.1%).\nCONCLUSIONS: In an analysis of data from the Hong Kong cohort of patients with COVID-19 and a meta-analysis of findings from publications, we found that 17.6% of patients with COVID-19 had gastrointestinal symptoms. Virus RNA was detected in stool samples from 48.1% patients-even in stool collected after respiratory samples tested negative. Healthcare workers should therefore exercise caution in collecting fecal samples or performing endoscopic procedures in patients with COVID-19-even during patient recovery."}

    LitCovid-TimeML

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Manifestations of SARS-CoV-2 Infection and Virus Load in Fecal Samples from the Hong Kong Cohort and Systematic Review and Meta-analysis.\nBACKGROUND \u0026 AIMS: Infection with SARS-CoV-2 causes COVID-19, which has been characterized by fever, respiratory, and gastrointestinal symptoms as well as shedding of virus RNA into feces. We performed a systematic review and meta-analysis of published gastrointestinal symptoms and detection of virus in stool, and also summarized data from a cohort of patients with COVID-19 in Hong Kong.\nMETHODS: We collected data from the cohort of patients with COVID-19 in Hong Kong (n=59; diagnosis from February 2 through Feb 29, 2020), and searched PubMed, Embase, Cochrane and three Chinese databases through March 11, 2020 according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. We analyzed pooled data on the prevalence of overall and individual gastrointestinal symptoms (anorexia, nausea, vomiting, diarrhea, and abdominal pain or discomfort) using a random effects model.\nRESULTS: Among the 59 patients with COVID-19 in Hong Kong, 15 patients (25.4%) had gastrointestinal symptoms and 9 patients (15.3%) had stool that tested positive for virus RNA. Stool viral RNA was detected in 38.5% and 8.7% among those with and without diarrhea, respectively (P=.02). The median fecal viral load was 5.1 log10cpm in patients with diarrhea vs 3.9 log10cpm in patients without diarrhea (P=.06). In a meta-analysis of 60 studies, comprising 4243 patients, the pooled prevalence of all gastrointestinal symptoms was 17.6% (95% CI, 12.3%-24.5%); 11.8% of patients with non-severe COVID-19 had gastrointestinal symptoms (95% CI, 4.1%-29.1%) and 17.1% of patients with severe COVID-19 had gastrointestinal symptoms (95% CI, 6.9%-36.7%). In the meta-analysis, the pooled prevalence of stool samples that were positive for virus RNA was 48.1% (95% CI, 38.3%-57.9%); of these samples, 70.3% of those collected after loss of virus from respiratory specimens tested positive for the virus (95% CI, 49.6%-85.1%).\nCONCLUSIONS: In an analysis of data from the Hong Kong cohort of patients with COVID-19 and a meta-analysis of findings from publications, we found that 17.6% of patients with COVID-19 had gastrointestinal symptoms. Virus RNA was detected in stool samples from 48.1% patients-even in stool collected after respiratory samples tested negative. Healthcare workers should therefore exercise caution in collecting fecal samples or performing endoscopic procedures in patients with COVID-19-even during patient recovery."}

    LitCovid-PD-HP-v1

    {"project":"LitCovid-PD-HP-v1","denotations":[{"id":"T1","span":{"begin":249,"end":254},"obj":"Phenotype"},{"id":"T2","span":{"begin":964,"end":972},"obj":"Phenotype"},{"id":"T3","span":{"begin":974,"end":990},"obj":"Phenotype"},{"id":"T4","span":{"begin":974,"end":980},"obj":"Phenotype"},{"id":"T5","span":{"begin":982,"end":990},"obj":"Phenotype"},{"id":"T6","span":{"begin":992,"end":1000},"obj":"Phenotype"},{"id":"T7","span":{"begin":1006,"end":1020},"obj":"Phenotype"},{"id":"T8","span":{"begin":1320,"end":1328},"obj":"Phenotype"},{"id":"T9","span":{"begin":1414,"end":1422},"obj":"Phenotype"},{"id":"T10","span":{"begin":1459,"end":1467},"obj":"Phenotype"}],"attributes":[{"id":"A6","pred":"hp_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/HP_0002014"},{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A8","pred":"hp_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/HP_0002014"},{"id":"A4","pred":"hp_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/HP_0002018"},{"id":"A9","pred":"hp_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/HP_0002014"},{"id":"A10","pred":"hp_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/HP_0002014"},{"id":"A7","pred":"hp_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/HP_0002027"},{"id":"A3","pred":"hp_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/HP_0002017"},{"id":"A2","pred":"hp_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/HP_0002039"},{"id":"A5","pred":"hp_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/HP_0002013"}],"text":"Gastrointestinal Manifestations of SARS-CoV-2 Infection and Virus Load in Fecal Samples from the Hong Kong Cohort and Systematic Review and Meta-analysis.\nBACKGROUND \u0026 AIMS: Infection with SARS-CoV-2 causes COVID-19, which has been characterized by fever, respiratory, and gastrointestinal symptoms as well as shedding of virus RNA into feces. We performed a systematic review and meta-analysis of published gastrointestinal symptoms and detection of virus in stool, and also summarized data from a cohort of patients with COVID-19 in Hong Kong.\nMETHODS: We collected data from the cohort of patients with COVID-19 in Hong Kong (n=59; diagnosis from February 2 through Feb 29, 2020), and searched PubMed, Embase, Cochrane and three Chinese databases through March 11, 2020 according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. We analyzed pooled data on the prevalence of overall and individual gastrointestinal symptoms (anorexia, nausea, vomiting, diarrhea, and abdominal pain or discomfort) using a random effects model.\nRESULTS: Among the 59 patients with COVID-19 in Hong Kong, 15 patients (25.4%) had gastrointestinal symptoms and 9 patients (15.3%) had stool that tested positive for virus RNA. Stool viral RNA was detected in 38.5% and 8.7% among those with and without diarrhea, respectively (P=.02). The median fecal viral load was 5.1 log10cpm in patients with diarrhea vs 3.9 log10cpm in patients without diarrhea (P=.06). In a meta-analysis of 60 studies, comprising 4243 patients, the pooled prevalence of all gastrointestinal symptoms was 17.6% (95% CI, 12.3%-24.5%); 11.8% of patients with non-severe COVID-19 had gastrointestinal symptoms (95% CI, 4.1%-29.1%) and 17.1% of patients with severe COVID-19 had gastrointestinal symptoms (95% CI, 6.9%-36.7%). In the meta-analysis, the pooled prevalence of stool samples that were positive for virus RNA was 48.1% (95% CI, 38.3%-57.9%); of these samples, 70.3% of those collected after loss of virus from respiratory specimens tested positive for the virus (95% CI, 49.6%-85.1%).\nCONCLUSIONS: In an analysis of data from the Hong Kong cohort of patients with COVID-19 and a meta-analysis of findings from publications, we found that 17.6% of patients with COVID-19 had gastrointestinal symptoms. Virus RNA was detected in stool samples from 48.1% patients-even in stool collected after respiratory samples tested negative. Healthcare workers should therefore exercise caution in collecting fecal samples or performing endoscopic procedures in patients with COVID-19-even during patient recovery."}

    LitCovid-PD-MONDO-v1

    {"project":"LitCovid-PD-MONDO-v1","denotations":[{"id":"T1","span":{"begin":35,"end":43},"obj":"Disease"},{"id":"T2","span":{"begin":46,"end":55},"obj":"Disease"},{"id":"T3","span":{"begin":174,"end":183},"obj":"Disease"},{"id":"T4","span":{"begin":189,"end":197},"obj":"Disease"},{"id":"T5","span":{"begin":207,"end":215},"obj":"Disease"},{"id":"T6","span":{"begin":523,"end":531},"obj":"Disease"},{"id":"T7","span":{"begin":606,"end":614},"obj":"Disease"},{"id":"T8","span":{"begin":992,"end":1000},"obj":"Disease"},{"id":"T9","span":{"begin":1102,"end":1110},"obj":"Disease"},{"id":"T10","span":{"begin":1320,"end":1328},"obj":"Disease"},{"id":"T11","span":{"begin":1414,"end":1422},"obj":"Disease"},{"id":"T12","span":{"begin":1459,"end":1467},"obj":"Disease"},{"id":"T13","span":{"begin":1659,"end":1667},"obj":"Disease"},{"id":"T14","span":{"begin":1753,"end":1761},"obj":"Disease"},{"id":"T15","span":{"begin":2163,"end":2171},"obj":"Disease"},{"id":"T16","span":{"begin":2260,"end":2268},"obj":"Disease"},{"id":"T17","span":{"begin":2561,"end":2569},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A3","pred":"mondo_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A10","pred":"mondo_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A11","pred":"mondo_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A12","pred":"mondo_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MONDO_0001673"},{"id":"A13","pred":"mondo_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A14","pred":"mondo_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A15","pred":"mondo_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A16","pred":"mondo_id","subj":"T16","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A17","pred":"mondo_id","subj":"T17","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"Gastrointestinal Manifestations of SARS-CoV-2 Infection and Virus Load in Fecal Samples from the Hong Kong Cohort and Systematic Review and Meta-analysis.\nBACKGROUND \u0026 AIMS: Infection with SARS-CoV-2 causes COVID-19, which has been characterized by fever, respiratory, and gastrointestinal symptoms as well as shedding of virus RNA into feces. We performed a systematic review and meta-analysis of published gastrointestinal symptoms and detection of virus in stool, and also summarized data from a cohort of patients with COVID-19 in Hong Kong.\nMETHODS: We collected data from the cohort of patients with COVID-19 in Hong Kong (n=59; diagnosis from February 2 through Feb 29, 2020), and searched PubMed, Embase, Cochrane and three Chinese databases through March 11, 2020 according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. We analyzed pooled data on the prevalence of overall and individual gastrointestinal symptoms (anorexia, nausea, vomiting, diarrhea, and abdominal pain or discomfort) using a random effects model.\nRESULTS: Among the 59 patients with COVID-19 in Hong Kong, 15 patients (25.4%) had gastrointestinal symptoms and 9 patients (15.3%) had stool that tested positive for virus RNA. Stool viral RNA was detected in 38.5% and 8.7% among those with and without diarrhea, respectively (P=.02). The median fecal viral load was 5.1 log10cpm in patients with diarrhea vs 3.9 log10cpm in patients without diarrhea (P=.06). In a meta-analysis of 60 studies, comprising 4243 patients, the pooled prevalence of all gastrointestinal symptoms was 17.6% (95% CI, 12.3%-24.5%); 11.8% of patients with non-severe COVID-19 had gastrointestinal symptoms (95% CI, 4.1%-29.1%) and 17.1% of patients with severe COVID-19 had gastrointestinal symptoms (95% CI, 6.9%-36.7%). In the meta-analysis, the pooled prevalence of stool samples that were positive for virus RNA was 48.1% (95% CI, 38.3%-57.9%); of these samples, 70.3% of those collected after loss of virus from respiratory specimens tested positive for the virus (95% CI, 49.6%-85.1%).\nCONCLUSIONS: In an analysis of data from the Hong Kong cohort of patients with COVID-19 and a meta-analysis of findings from publications, we found that 17.6% of patients with COVID-19 had gastrointestinal symptoms. Virus RNA was detected in stool samples from 48.1% patients-even in stool collected after respiratory samples tested negative. Healthcare workers should therefore exercise caution in collecting fecal samples or performing endoscopic procedures in patients with COVID-19-even during patient recovery."}

    LitCovid-PD-FMA-UBERON-v1

    {"project":"LitCovid-PD-FMA-UBERON-v1","denotations":[{"id":"T1","span":{"begin":328,"end":331},"obj":"Body_part"},{"id":"T2","span":{"begin":337,"end":342},"obj":"Body_part"},{"id":"T3","span":{"begin":460,"end":465},"obj":"Body_part"},{"id":"T4","span":{"begin":1202,"end":1207},"obj":"Body_part"},{"id":"T5","span":{"begin":1239,"end":1242},"obj":"Body_part"},{"id":"T6","span":{"begin":1244,"end":1249},"obj":"Body_part"},{"id":"T7","span":{"begin":1256,"end":1259},"obj":"Body_part"},{"id":"T8","span":{"begin":1861,"end":1866},"obj":"Body_part"},{"id":"T9","span":{"begin":1904,"end":1907},"obj":"Body_part"},{"id":"T10","span":{"begin":2306,"end":2309},"obj":"Body_part"},{"id":"T11","span":{"begin":2326,"end":2331},"obj":"Body_part"},{"id":"T12","span":{"begin":2368,"end":2373},"obj":"Body_part"}],"attributes":[{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A4","pred":"fma_id","subj":"T4","obj":"http://purl.org/sig/ont/fma/fma64183"},{"id":"A41187","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/UBERON_0001988"},{"id":"A12","pred":"fma_id","subj":"T12","obj":"http://purl.org/sig/ont/fma/fma64183"},{"id":"A9299","pred":"uberon_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/UBERON_0001988"},{"id":"A11","pred":"fma_id","subj":"T11","obj":"http://purl.org/sig/ont/fma/fma64183"},{"id":"A23853","pred":"uberon_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/UBERON_0001988"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma64183"},{"id":"A75741","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/UBERON_0001988"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A5","pred":"fma_id","subj":"T5","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A2","pred":"fma_id","subj":"T2","obj":"http://purl.org/sig/ont/fma/fma64183"},{"id":"A65941","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0001988"},{"id":"A3","pred":"fma_id","subj":"T3","obj":"http://purl.org/sig/ont/fma/fma64183"},{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma64183"},{"id":"A52643","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0001988"},{"id":"A3755","pred":"uberon_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/UBERON_0001988"}],"text":"Gastrointestinal Manifestations of SARS-CoV-2 Infection and Virus Load in Fecal Samples from the Hong Kong Cohort and Systematic Review and Meta-analysis.\nBACKGROUND \u0026 AIMS: Infection with SARS-CoV-2 causes COVID-19, which has been characterized by fever, respiratory, and gastrointestinal symptoms as well as shedding of virus RNA into feces. We performed a systematic review and meta-analysis of published gastrointestinal symptoms and detection of virus in stool, and also summarized data from a cohort of patients with COVID-19 in Hong Kong.\nMETHODS: We collected data from the cohort of patients with COVID-19 in Hong Kong (n=59; diagnosis from February 2 through Feb 29, 2020), and searched PubMed, Embase, Cochrane and three Chinese databases through March 11, 2020 according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. We analyzed pooled data on the prevalence of overall and individual gastrointestinal symptoms (anorexia, nausea, vomiting, diarrhea, and abdominal pain or discomfort) using a random effects model.\nRESULTS: Among the 59 patients with COVID-19 in Hong Kong, 15 patients (25.4%) had gastrointestinal symptoms and 9 patients (15.3%) had stool that tested positive for virus RNA. Stool viral RNA was detected in 38.5% and 8.7% among those with and without diarrhea, respectively (P=.02). The median fecal viral load was 5.1 log10cpm in patients with diarrhea vs 3.9 log10cpm in patients without diarrhea (P=.06). In a meta-analysis of 60 studies, comprising 4243 patients, the pooled prevalence of all gastrointestinal symptoms was 17.6% (95% CI, 12.3%-24.5%); 11.8% of patients with non-severe COVID-19 had gastrointestinal symptoms (95% CI, 4.1%-29.1%) and 17.1% of patients with severe COVID-19 had gastrointestinal symptoms (95% CI, 6.9%-36.7%). In the meta-analysis, the pooled prevalence of stool samples that were positive for virus RNA was 48.1% (95% CI, 38.3%-57.9%); of these samples, 70.3% of those collected after loss of virus from respiratory specimens tested positive for the virus (95% CI, 49.6%-85.1%).\nCONCLUSIONS: In an analysis of data from the Hong Kong cohort of patients with COVID-19 and a meta-analysis of findings from publications, we found that 17.6% of patients with COVID-19 had gastrointestinal symptoms. Virus RNA was detected in stool samples from 48.1% patients-even in stool collected after respiratory samples tested negative. Healthcare workers should therefore exercise caution in collecting fecal samples or performing endoscopic procedures in patients with COVID-19-even during patient recovery."}

    MeasurableQuantitativeAnnotation

    {"project":"MeasurableQuantitativeAnnotation","denotations":[{"id":"E1","span":{"begin":1149,"end":1174},"obj":"entity"},{"id":"E2","span":{"begin":1202,"end":1242},"obj":"entity"},{"id":"N1","span":{"begin":1125,"end":1127},"obj":"num"},{"id":"N2","span":{"begin":1138,"end":1142},"obj":"num"},{"id":"N3","span":{"begin":1179,"end":1180},"obj":"num"},{"id":"N4","span":{"begin":1191,"end":1195},"obj":"num"},{"id":"U1","span":{"begin":1142,"end":1143},"obj":"unit"},{"id":"U2","span":{"begin":1195,"end":1196},"obj":"unit"},{"id":"E1","span":{"begin":1648,"end":1697},"obj":"entity"},{"id":"E2","span":{"begin":1746,"end":1791},"obj":"entity"},{"id":"N1","span":{"begin":1625,"end":1629},"obj":"num"},{"id":"N2","span":{"begin":1723,"end":1727},"obj":"num"},{"id":"U1","span":{"begin":1629,"end":1630},"obj":"unit"},{"id":"U2","span":{"begin":1727,"end":1728},"obj":"unit"}],"relations":[{"id":"R1","pred":"associateWith","subj":"E1","obj":"N1"},{"id":"R2","pred":"associateWith","subj":"E1","obj":"N2"},{"id":"R3","pred":"associateOf","subj":"N2","obj":"U1"},{"id":"R4","pred":"associateWith","subj":"E2","obj":"N3"},{"id":"R5","pred":"associateWith","subj":"E2","obj":"N4"},{"id":"R6","pred":"associateOf","subj":"N4","obj":"U2"},{"id":"R1","pred":"associateWith","subj":"E2","obj":"N2"},{"id":"R2","pred":"associateOf","subj":"N2","obj":"U2"},{"id":"R3","pred":"associateWith","subj":"E1","obj":"N1"},{"id":"R4","pred":"associateOf","subj":"N1","obj":"U1"}],"text":"Gastrointestinal Manifestations of SARS-CoV-2 Infection and Virus Load in Fecal Samples from the Hong Kong Cohort and Systematic Review and Meta-analysis.\nBACKGROUND \u0026 AIMS: Infection with SARS-CoV-2 causes COVID-19, which has been characterized by fever, respiratory, and gastrointestinal symptoms as well as shedding of virus RNA into feces. We performed a systematic review and meta-analysis of published gastrointestinal symptoms and detection of virus in stool, and also summarized data from a cohort of patients with COVID-19 in Hong Kong.\nMETHODS: We collected data from the cohort of patients with COVID-19 in Hong Kong (n=59; diagnosis from February 2 through Feb 29, 2020), and searched PubMed, Embase, Cochrane and three Chinese databases through March 11, 2020 according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. We analyzed pooled data on the prevalence of overall and individual gastrointestinal symptoms (anorexia, nausea, vomiting, diarrhea, and abdominal pain or discomfort) using a random effects model.\nRESULTS: Among the 59 patients with COVID-19 in Hong Kong, 15 patients (25.4%) had gastrointestinal symptoms and 9 patients (15.3%) had stool that tested positive for virus RNA. Stool viral RNA was detected in 38.5% and 8.7% among those with and without diarrhea, respectively (P=.02). The median fecal viral load was 5.1 log10cpm in patients with diarrhea vs 3.9 log10cpm in patients without diarrhea (P=.06). In a meta-analysis of 60 studies, comprising 4243 patients, the pooled prevalence of all gastrointestinal symptoms was 17.6% (95% CI, 12.3%-24.5%); 11.8% of patients with non-severe COVID-19 had gastrointestinal symptoms (95% CI, 4.1%-29.1%) and 17.1% of patients with severe COVID-19 had gastrointestinal symptoms (95% CI, 6.9%-36.7%). In the meta-analysis, the pooled prevalence of stool samples that were positive for virus RNA was 48.1% (95% CI, 38.3%-57.9%); of these samples, 70.3% of those collected after loss of virus from respiratory specimens tested positive for the virus (95% CI, 49.6%-85.1%).\nCONCLUSIONS: In an analysis of data from the Hong Kong cohort of patients with COVID-19 and a meta-analysis of findings from publications, we found that 17.6% of patients with COVID-19 had gastrointestinal symptoms. Virus RNA was detected in stool samples from 48.1% patients-even in stool collected after respiratory samples tested negative. Healthcare workers should therefore exercise caution in collecting fecal samples or performing endoscopic procedures in patients with COVID-19-even during patient recovery."}