PubMed:32251539 JSONTXT

Annnotations TAB JSON ListView MergeView

    LitCovid-sentences-v1

    {"project":"LitCovid-sentences-v1","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":27},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":28,"end":218},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":219,"end":437},"obj":"Sentence"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}

    LitCovid-TimeML

    {"project":"LitCovid-TimeML","denotations":[{"id":"tok1","span":{"begin":0,"end":6},"obj":"NNP"},{"id":"tok2","span":{"begin":6,"end":8},"obj":"CD"},{"id":"tok3","span":{"begin":9,"end":12},"obj":"CC"},{"id":"tok4","span":{"begin":13,"end":18},"obj":"NN"},{"id":"tok5","span":{"begin":19,"end":26},"obj":"NN"},{"id":"tok6","span":{"begin":26,"end":27},"obj":"."},{"id":"tok7","span":{"begin":28,"end":33},"obj":"IN"},{"id":"tok8","span":{"begin":34,"end":42},"obj":"NNP"},{"id":"tok9","span":{"begin":43,"end":47},"obj":"CD"},{"id":"tok10","span":{"begin":47,"end":48},"obj":","},{"id":"tok11","span":{"begin":49,"end":57},"obj":"NNS"},{"id":"tok12","span":{"begin":58,"end":62},"obj":"IN"},{"id":"tok13","span":{"begin":63,"end":74},"obj":"JJ"},{"id":"tok14","span":{"begin":75,"end":84},"obj":"NN"},{"id":"tok15","span":{"begin":85,"end":89},"obj":"VBP"},{"id":"tok16","span":{"begin":90,"end":94},"obj":"VBN"},{"id":"tok17","span":{"begin":95,"end":100},"obj":"VBN"},{"id":"tok18","span":{"begin":101,"end":103},"obj":"IN"},{"id":"tok19","span":{"begin":104,"end":109},"obj":"NNP"},{"id":"tok20","span":{"begin":109,"end":110},"obj":","},{"id":"tok21","span":{"begin":111,"end":116},"obj":"NNP"},{"id":"tok22","span":{"begin":117,"end":125},"obj":"NNP"},{"id":"tok23","span":{"begin":125,"end":126},"obj":","},{"id":"tok24","span":{"begin":127,"end":132},"obj":"NNP"},{"id":"tok25","span":{"begin":132,"end":133},"obj":","},{"id":"tok26","span":{"begin":134,"end":139},"obj":"WDT"},{"id":"tok27","span":{"begin":140,"end":143},"obj":"VBD"},{"id":"tok28","span":{"begin":144,"end":150},"obj":"VBN"},{"id":"tok29","span":{"begin":151,"end":153},"obj":"IN"},{"id":"tok30","span":{"begin":154,"end":155},"obj":"DT"},{"id":"tok31","span":{"begin":156,"end":161},"obj":"NN"},{"id":"tok32","span":{"begin":162,"end":173},"obj":"JJ"},{"id":"tok33","span":{"begin":174,"end":178},"obj":"WDT"},{"id":"tok34","span":{"begin":179,"end":182},"obj":"VBD"},{"id":"tok35","span":{"begin":183,"end":186},"obj":"RB"},{"id":"tok36","span":{"begin":187,"end":191},"obj":"VBN"},{"id":"tok37","span":{"begin":192,"end":202},"obj":"RB"},{"id":"tok38","span":{"begin":203,"end":213},"obj":"VBN"},{"id":"tok39","span":{"begin":214,"end":215},"obj":"("},{"id":"tok40","span":{"begin":215,"end":216},"obj":"LS"},{"id":"tok41","span":{"begin":216,"end":217},"obj":")"},{"id":"tok42","span":{"begin":217,"end":218},"obj":"."},{"id":"tok43","span":{"begin":219,"end":230},"obj":"NNP"},{"id":"tok44","span":{"begin":231,"end":238},"obj":"VBD"},{"id":"tok45","span":{"begin":239,"end":241},"obj":"IN"},{"id":"tok46","span":{"begin":242,"end":246},"obj":"CD"},{"id":"tok47","span":{"begin":247,"end":252},"obj":"NN"},{"id":"tok48","span":{"begin":253,"end":264},"obj":"JJ"},{"id":"tok49","span":{"begin":265,"end":266},"obj":"("},{"id":"tok50","span":{"begin":266,"end":270},"obj":"CD"},{"id":"tok51","span":{"begin":270,"end":271},"obj":":"},{"id":"tok52","span":{"begin":271,"end":275},"obj":"NN"},{"id":"tok53","span":{"begin":275,"end":276},"obj":")"},{"id":"tok54","span":{"begin":276,"end":277},"obj":","},{"id":"tok55","span":{"begin":278,"end":281},"obj":"DT"},{"id":"tok56","span":{"begin":282,"end":290},"obj":"NN"},{"id":"tok57","span":{"begin":291,"end":294},"obj":"VBZ"},{"id":"tok58","span":{"begin":295,"end":298},"obj":"RB"},{"id":"tok59","span":{"begin":299,"end":303},"obj":"VBN"},{"id":"tok60","span":{"begin":304,"end":309},"obj":"VBN"},{"id":"tok61","span":{"begin":310,"end":316},"obj":"NNP"},{"id":"tok62","span":{"begin":317,"end":322},"obj":"NNP"},{"id":"tok63","span":{"begin":323,"end":334},"obj":"JJ"},{"id":"tok64","span":{"begin":335,"end":343},"obj":"NNP"},{"id":"tok65","span":{"begin":344,"end":356},"obj":"NNP"},{"id":"tok66","span":{"begin":356,"end":357},"obj":"CD"},{"id":"tok67","span":{"begin":358,"end":359},"obj":"("},{"id":"tok68","span":{"begin":359,"end":368},"obj":"NNP"},{"id":"tok69","span":{"begin":368,"end":369},"obj":"LS"},{"id":"tok70","span":{"begin":369,"end":370},"obj":")"},{"id":"tok71","span":{"begin":371,"end":372},"obj":"("},{"id":"tok72","span":{"begin":372,"end":373},"obj":"LS"},{"id":"tok73","span":{"begin":373,"end":374},"obj":")"},{"id":"tok74","span":{"begin":374,"end":375},"obj":","},{"id":"tok75","span":{"begin":376,"end":381},"obj":"IN"},{"id":"tok76","span":{"begin":382,"end":385},"obj":"DT"},{"id":"tok77","span":{"begin":386,"end":393},"obj":"NN"},{"id":"tok78","span":{"begin":394,"end":400},"obj":"VBD"},{"id":"tok79","span":{"begin":401,"end":412},"obj":"NNP"},{"id":"tok80","span":{"begin":413,"end":420},"obj":"NNP"},{"id":"tok81","span":{"begin":421,"end":425},"obj":"CD"},{"id":"tok82","span":{"begin":426,"end":427},"obj":"("},{"id":"tok83","span":{"begin":427,"end":433},"obj":"NNP"},{"id":"tok84","span":{"begin":433,"end":435},"obj":"CD"},{"id":"tok85","span":{"begin":435,"end":436},"obj":")"},{"id":"tok86","span":{"begin":436,"end":437},"obj":"."},{"id":"lookup1","span":{"begin":34,"end":42},"obj":"date"},{"id":"lookup2","span":{"begin":43,"end":47},"obj":"year"},{"id":"lookup3","span":{"begin":101,"end":103},"obj":"country_code"},{"id":"lookup4","span":{"begin":104,"end":109},"obj":"location"},{"id":"lookup5","span":{"begin":111,"end":116},"obj":"location"},{"id":"lookup6","span":{"begin":117,"end":125},"obj":"loc_key"},{"id":"lookup7","span":{"begin":127,"end":132},"obj":"location"},{"id":"lookup8","span":{"begin":151,"end":153},"obj":"country_code"},{"id":"lookup9","span":{"begin":239,"end":241},"obj":"country_code"},{"id":"lookup10","span":{"begin":242,"end":246},"obj":"year"},{"id":"lookup11","span":{"begin":266,"end":270},"obj":"year"},{"id":"lookup12","span":{"begin":421,"end":425},"obj":"year"},{"id":"event1","span":{"begin":304,"end":309},"obj":"OCCURRENCE"},{"id":"event2","span":{"begin":95,"end":100},"obj":"OCCURRENCE"},{"id":"event3","span":{"begin":394,"end":400},"obj":"OCCURRENCE"},{"id":"event4","span":{"begin":203,"end":213},"obj":"OCCURRENCE"},{"id":"event5","span":{"begin":231,"end":238},"obj":"OCCURRENCE"},{"id":"event6","span":{"begin":144,"end":150},"obj":"OCCURRENCE"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}

    LitCovid-PD-HP-v1

    {"project":"LitCovid-PD-HP-v1","denotations":[{"id":"T1","span":{"begin":13,"end":26},"obj":"Phenotype"},{"id":"T2","span":{"begin":75,"end":84},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0001392"},{"id":"A2","pred":"hp_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/HP_0002090"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}

    LitCovid-PD-MONDO-v1

    {"project":"LitCovid-PD-MONDO-v1","denotations":[{"id":"T1","span":{"begin":0,"end":8},"obj":"Disease"},{"id":"T2","span":{"begin":13,"end":26},"obj":"Disease"},{"id":"T3","span":{"begin":75,"end":84},"obj":"Disease"},{"id":"T4","span":{"begin":310,"end":357},"obj":"Disease"},{"id":"T5","span":{"begin":359,"end":367},"obj":"Disease"},{"id":"T6","span":{"begin":401,"end":425},"obj":"Disease"},{"id":"T7","span":{"begin":427,"end":435},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0005154"},{"id":"A3","pred":"mondo_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}

    LitCovid-PD-FMA-UBERON-v1

    {"project":"LitCovid-PD-FMA-UBERON-v1","denotations":[{"id":"T1","span":{"begin":13,"end":18},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma7197"},{"id":"A85985","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0002107"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}

    LitCovid-OGER-BB

    {"project":"LitCovid-OGER-BB","denotations":[{"id":"T1","span":{"begin":0,"end":8},"obj":"SP_7"},{"id":"T2","span":{"begin":13,"end":18},"obj":"UBERON:0002107"}],"namespaces":[{"prefix":"NCBITaxon","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}

    LitCovid-PD-FMA-UBERON

    {"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T1","span":{"begin":13,"end":18},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"fma_id","subj":"T1","obj":"http://purl.org/sig/ont/fma/fma7197"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}

    LitCovid-PD-UBERON

    {"project":"LitCovid-PD-UBERON","denotations":[{"id":"T1","span":{"begin":13,"end":18},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0002107"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}

    LitCovid-PD-MONDO

    {"project":"LitCovid-PD-MONDO","denotations":[{"id":"T1","span":{"begin":0,"end":8},"obj":"Disease"},{"id":"T2","span":{"begin":13,"end":26},"obj":"Disease"},{"id":"T3","span":{"begin":75,"end":84},"obj":"Disease"},{"id":"T4","span":{"begin":310,"end":357},"obj":"Disease"},{"id":"T5","span":{"begin":359,"end":367},"obj":"Disease"},{"id":"T6","span":{"begin":401,"end":425},"obj":"Disease"},{"id":"T7","span":{"begin":427,"end":435},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0005154"},{"id":"A3","pred":"mondo_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MONDO_0005249"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}

    LitCovid-PD-CLO

    {"project":"LitCovid-PD-CLO","denotations":[{"id":"T1","span":{"begin":13,"end":18},"obj":"http://purl.obolibrary.org/obo/UBERON_0002107"},{"id":"T2","span":{"begin":13,"end":18},"obj":"http://www.ebi.ac.uk/efo/EFO_0000887"},{"id":"T3","span":{"begin":154,"end":155},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T4","span":{"begin":291,"end":294},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T5","span":{"begin":368,"end":373},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}

    LitCovid-sentences

    {"project":"LitCovid-sentences","denotations":[{"id":"T1","span":{"begin":0,"end":27},"obj":"Sentence"},{"id":"T2","span":{"begin":28,"end":218},"obj":"Sentence"},{"id":"T3","span":{"begin":219,"end":437},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}

    LitCovid-PubTator

    {"project":"LitCovid-PubTator","denotations":[{"id":"2","span":{"begin":0,"end":8},"obj":"Disease"},{"id":"3","span":{"begin":13,"end":26},"obj":"Disease"}],"attributes":[{"id":"A2","pred":"tao:has_database_id","subj":"2","obj":"MESH:C000657245"},{"id":"A3","pred":"tao:has_database_id","subj":"3","obj":"MESH:D008107"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}

    LitCovid-PD-HP

    {"project":"LitCovid-PD-HP","denotations":[{"id":"T1","span":{"begin":13,"end":26},"obj":"Phenotype"},{"id":"T2","span":{"begin":75,"end":84},"obj":"Phenotype"}],"attributes":[{"id":"A1","pred":"hp_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/HP_0001392"},{"id":"A2","pred":"hp_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/HP_0002090"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}

    LitCovid_AGAC_only

    {"project":"LitCovid_AGAC_only","denotations":[{"id":"p5689s21","span":{"begin":144,"end":153},"obj":"Reg"}],"text":"COVID-19 and liver disease.\nSince December 2019, patients with unexplained pneumonia have been found in Wuhan, Hubei Province, China, which was caused by a novel coronavirus that had not been previously identified (1). Tentatively defined as 2019 novel coronavirus (2019-nCoV), the pathogen has now been named Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) (2), while the disease termed Coronavirus Disease 2019 (COVID-19)."}