PubMed:32066783
Annnotations
mondo_disease
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 64-70 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T2 | 126-141 | Disease | denotes | prostate cancer | http://purl.obolibrary.org/obo/MONDO_0008315 |
| T3 | 244-259 | Disease | denotes | prostate cancer | http://purl.obolibrary.org/obo/MONDO_0008315 |
| T4 | 292-298 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T5 | 440-446 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T6 | 580-586 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T7 | 718-724 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T8 | 1070-1076 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T9 | 1439-1445 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 1357-1364 | Glycan | denotes | Lewis X | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00051MO |
HP-phenotype
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 64-70 | Phenotype | denotes | cancer | HP:0002664 |
| T2 | 126-141 | Phenotype | denotes | prostate cancer | HP:0012125 |
| T3 | 244-259 | Phenotype | denotes | prostate cancer | HP:0012125 |
| T4 | 292-298 | Phenotype | denotes | cancer | HP:0002664 |
| T5 | 440-446 | Phenotype | denotes | cancer | HP:0002664 |
| T6 | 539-545 | Phenotype | denotes | tumour | HP:0002664 |
| T7 | 580-586 | Phenotype | denotes | cancer | HP:0002664 |
| T8 | 718-724 | Phenotype | denotes | cancer | HP:0002664 |
| T9 | 1070-1076 | Phenotype | denotes | cancer | HP:0002664 |
| T10 | 1439-1445 | Phenotype | denotes | cancer | HP:0002664 |
Glycan-GlyCosmos
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 1357-1364 | Glycan | denotes | Lewis X | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00051MO |
GlyCosmos-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 1357-1364 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | Lewis X | http://www.glycoepitope.jp/epitopes/EP0011 |
GlyCosmos15-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 64-70 | Phenotype | denotes | cancer | HP:0002664 |
| T2 | 126-141 | Phenotype | denotes | prostate cancer | HP:0012125 |
| T3 | 244-259 | Phenotype | denotes | prostate cancer | HP:0012125 |
| T4 | 292-298 | Phenotype | denotes | cancer | HP:0002664 |
| T5 | 440-446 | Phenotype | denotes | cancer | HP:0002664 |
| T6 | 539-545 | Phenotype | denotes | tumour | HP:0002664 |
| T7 | 580-586 | Phenotype | denotes | cancer | HP:0002664 |
| T8 | 718-724 | Phenotype | denotes | cancer | HP:0002664 |
| T9 | 1070-1076 | Phenotype | denotes | cancer | HP:0002664 |
| T10 | 1439-1445 | Phenotype | denotes | cancer | HP:0002664 |
GlyCosmos15-CL
| Id | Subject | Object | Predicate | Lexical cue | cl_id |
|---|---|---|---|---|---|
| T1 | 718-729 | Cell | denotes | cancer cell | http://purl.obolibrary.org/obo/CL:0001064 |
GlyCosmos15-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 26-34 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T2 | 71-77 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T3 | 126-134 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T4 | 153-161 | Body_part | denotes | Prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T5 | 244-252 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T6 | 447-453 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T7 | 699-713 | Body_part | denotes | seminal plasma | http://purl.obolibrary.org/obo/UBERON_0006530 |
| T8 | 958-972 | Body_part | denotes | seminal plasma | http://purl.obolibrary.org/obo/UBERON_0006530 |
GlyCosmos15-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 64-70 | Disease | denotes | cancer | MONDO:0004992 |
| T2 | 126-141 | Disease | denotes | prostate cancer | MONDO:0005159|MONDO:0008315 |
| T4 | 244-259 | Disease | denotes | prostate cancer | MONDO:0005159|MONDO:0008315 |
| T6 | 292-298 | Disease | denotes | cancer | MONDO:0004992 |
| T7 | 440-446 | Disease | denotes | cancer | MONDO:0004992 |
| T8 | 539-545 | Disease | denotes | tumour | MONDO:0005070 |
| T9 | 580-586 | Disease | denotes | cancer | MONDO:0004992 |
| T10 | 718-724 | Disease | denotes | cancer | MONDO:0004992 |
| T11 | 1070-1076 | Disease | denotes | cancer | MONDO:0004992 |
| T12 | 1439-1445 | Disease | denotes | cancer | MONDO:0004992 |
GlyCosmos15-Sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-152 | Sentence | denotes | Study of glycosylation of prostate-specific antigen secreted by cancer tissue-originated spheroids reveals new candidates for prostate cancer detection. |
| T2 | 153-260 | Sentence | denotes | Prostate-specific antigen (PSA) is the most frequently used biomarker for the screening of prostate cancer. |
| T3 | 261-346 | Sentence | denotes | Understanding the structure of cancer-specific glycans can help us improve PSA assay. |
| T4 | 347-613 | Sentence | denotes | In the present study, we analysed the glycans of PSA obtained from culture medium containing cancer tissue-originated spheroids (CTOS) which have similar characteristics as that of the parent tumour to explore the new candidates for cancer-related glycoforms of PSA. |
| T5 | 614-804 | Sentence | denotes | The glycan profile of PSA from CTOS was determined by comparing with PSA from normal seminal plasma and cancer cell lines (LNCaP and 22Rv1) using lectin chromatography and mass spectrometry. |
| T6 | 805-983 | Sentence | denotes | PSA from CTOS was mostly sialylated and the content of Wisteria floribunda agglutinin reactive glycan (LacdiNAc) was similar to that of PSA derived from seminal plasma and 22Rv1. |
| T7 | 984-1126 | Sentence | denotes | Conversely, concanavalin A (Con A)-unbound PSA was definitely detected from the three cancer origins but was almost negligible in seminal PSA. |
| T8 | 1127-1326 | Sentence | denotes | Two novel types of PSA were elucidated in the Con A-unbound fraction: one is a high molecular weight PSA with highly branched N-glycans, and the other is a low molecular weight PSA without N-glycans. |
| T9 | 1327-1400 | Sentence | denotes | Furthermore, the existence of Lewis X antigen group on PSA was indicated. |
| T10 | 1401-1462 | Sentence | denotes | These PSAs will be candidates for new cancer-related markers. |
GlyCosmos15-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 1357-1364 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | Lewis X | http://www.glycoepitope.jp/epitopes/EP0011 |
GlyCosmos15-Lectin-Jamboree
| Id | Subject | Object | Predicate | Lexical cue | glycosmos_id |
|---|---|---|---|---|---|
| T1 | 180-183 | Lectin | denotes | PSA | GL_000021 |
| T2 | 336-339 | Lectin | denotes | PSA | GL_000021 |
| T3 | 396-399 | Lectin | denotes | PSA | GL_000021 |
| T4 | 609-612 | Lectin | denotes | PSA | GL_000021 |
| T5 | 636-639 | Lectin | denotes | PSA | GL_000021 |
| T6 | 683-686 | Lectin | denotes | PSA | GL_000021 |
| T7 | 805-808 | Lectin | denotes | PSA | GL_000021 |
| T8 | 941-944 | Lectin | denotes | PSA | GL_000021 |
| T9 | 1027-1030 | Lectin | denotes | PSA | GL_000021 |
| T10 | 1122-1125 | Lectin | denotes | PSA | GL_000021 |
| T11 | 1146-1149 | Lectin | denotes | PSA | GL_000021 |
| T12 | 1228-1231 | Lectin | denotes | PSA | GL_000021 |
| T13 | 1304-1307 | Lectin | denotes | PSA | GL_000021 |
| T14 | 1382-1385 | Lectin | denotes | PSA | GL_000021 |
GlyCosmos15-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 860-879 | OrganismTaxon | denotes | Wisteria floribunda | 3922 |
GlyCosmos15-FMA
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 26-34 | Body_part | denotes | prostate | FMA:9600 |
| T2 | 71-77 | Body_part | denotes | tissue | FMA:9637 |
| T3 | 126-134 | Body_part | denotes | prostate | FMA:9600 |
| T4 | 153-161 | Body_part | denotes | Prostate | FMA:9600 |
| T5 | 244-252 | Body_part | denotes | prostate | FMA:9600 |
| T6 | 447-453 | Body_part | denotes | tissue | FMA:9637 |
| T7 | 707-713 | Body_part | denotes | plasma | FMA:62970 |
| T8 | 966-972 | Body_part | denotes | plasma | FMA:62970 |
GlyCosmos15-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 26-34 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
| T2 | 126-134 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
| T3 | 153-161 | Body_part | denotes | Prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
| T4 | 244-252 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 860-879 | OrganismTaxon | denotes | Wisteria floribunda | 3922 |
Anatomy-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 26-34 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
| T2 | 126-134 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
| T3 | 153-161 | Body_part | denotes | Prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
| T4 | 244-252 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/MAT_0000078 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 26-34 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T2 | 71-77 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T3 | 126-134 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T4 | 153-161 | Body_part | denotes | Prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T5 | 244-252 | Body_part | denotes | prostate | http://purl.obolibrary.org/obo/UBERON_0002367 |
| T6 | 447-453 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
| T7 | 699-713 | Body_part | denotes | seminal plasma | http://purl.obolibrary.org/obo/UBERON_0006530 |
| T8 | 958-972 | Body_part | denotes | seminal plasma | http://purl.obolibrary.org/obo/UBERON_0006530 |
GlyCosmos15-Lectin
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 860-890 | GL_001908 | denotes | Wisteria floribunda agglutinin |
| T2 | 1012-1017 | GL_002303 | denotes | Con A |
| T3 | 1173-1178 | GL_002303 | denotes | Con A |
Lectin_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 860-890 | GL_001908 | denotes | Wisteria floribunda agglutinin |
| T2 | 1012-1017 | GL_002303 | denotes | Con A |
| T3 | 1173-1178 | GL_002303 | denotes | Con A |
CL-cell
| Id | Subject | Object | Predicate | Lexical cue | cl_id |
|---|---|---|---|---|---|
| T1 | 718-729 | Cell | denotes | cancer cell | http://purl.obolibrary.org/obo/CL:0001064 |