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PubMed:32013309 JSONTXT

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JF-test

Id Subject Object Predicate Lexical cue
LappsGridBioNER_protein1 856-859 Protein denotes MCs
LappsGridBioNER_protein2 915-937 Protein denotes histamine and protease
LappsGridBioNER_protein3 987-1023 Protein denotes pro-inflammatory IL-1 family members
LappsGridBioNER_protein4 1034-1038 Protein denotes IL-1
LappsGridBioNER_protein5 1040-1044 Protein denotes IL-6
LappsGridBioNER_protein6 1049-1054 Protein denotes IL-33
LappsGridBioNER_protein7 1189-1208 Protein denotes IL-1 family members

Inflammaging

Id Subject Object Predicate Lexical cue
T1 0-90 Sentence denotes Mast cells contribute to coronavirus-induced inflammation: new anti-inflammatory strategy.
T2 91-216 Sentence denotes Coronavirus can cause respiratory syndrome which to date has affected about twelve thousand individuals, especially in China.
T3 217-335 Sentence denotes Coronavirus is interspecies and can also be transmitted from man to man, with an incubation ranging from 1 to 14 days.
T4 336-556 Sentence denotes Human coronavirus infections can induce not only mild to severe respiratory diseases, but also inflammation, high fever, cough, acute respiratory tract infection and dysfunction of internal organs that may lead to death.
T5 557-840 Sentence denotes Coronavirus infection (regardless of the various types of corona virus) is primarily attacked by immune cells including mast cells (MCs), which are located in the submucosa of the respiratory tract and in the nasal cavity and represent a barrier of protection against microorganisms.
T6 841-1055 Sentence denotes Viral activate MCs release early inflammatory chemical copounds including histamine and protease; while late activation provoke the generation of pro-inflammatory IL-1 family members including IL-1, IL-6 and IL-33.
T7 1056-1209 Sentence denotes Here, we propose for the first time that inflammation by coronavirus maybe inhibited by anti-inflammatory cytokines belonging to the IL-1 family members.
T1 0-90 Sentence denotes Mast cells contribute to coronavirus-induced inflammation: new anti-inflammatory strategy.
T2 91-216 Sentence denotes Coronavirus can cause respiratory syndrome which to date has affected about twelve thousand individuals, especially in China.
T3 217-335 Sentence denotes Coronavirus is interspecies and can also be transmitted from man to man, with an incubation ranging from 1 to 14 days.
T4 336-556 Sentence denotes Human coronavirus infections can induce not only mild to severe respiratory diseases, but also inflammation, high fever, cough, acute respiratory tract infection and dysfunction of internal organs that may lead to death.
T5 557-840 Sentence denotes Coronavirus infection (regardless of the various types of corona virus) is primarily attacked by immune cells including mast cells (MCs), which are located in the submucosa of the respiratory tract and in the nasal cavity and represent a barrier of protection against microorganisms.
T6 841-1055 Sentence denotes Viral activate MCs release early inflammatory chemical copounds including histamine and protease; while late activation provoke the generation of pro-inflammatory IL-1 family members including IL-1, IL-6 and IL-33.
T7 1056-1209 Sentence denotes Here, we propose for the first time that inflammation by coronavirus maybe inhibited by anti-inflammatory cytokines belonging to the IL-1 family members.

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 0-10 Body_part denotes Mast cells http://purl.org/sig/ont/fma/fma66784
T2 5-10 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T3 470-487 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T4 661-666 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T5 677-687 Body_part denotes mast cells http://purl.org/sig/ont/fma/fma66784
T6 682-687 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T7 720-729 Body_part denotes submucosa http://purl.org/sig/ont/fma/fma85391
T8 737-754 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T9 766-778 Body_part denotes nasal cavity http://purl.org/sig/ont/fma/fma54378
T10 915-924 Body_part denotes histamine http://purl.org/sig/ont/fma/fma61806
T11 1004-1008 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T12 1034-1038 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583
T13 1162-1171 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T14 1189-1193 Body_part denotes IL-1 http://purl.org/sig/ont/fma/fma86583

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 470-487 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T2 526-532 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T3 720-729 Body_part denotes submucosa http://purl.obolibrary.org/obo/UBERON_0000009
T4 737-754 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T5 766-778 Body_part denotes nasal cavity http://purl.obolibrary.org/obo/UBERON_0001707

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 45-57 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T2 354-364 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T3 400-420 Disease denotes respiratory diseases http://purl.obolibrary.org/obo/MONDO_0005087
T4 431-443 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T5 470-497 Disease denotes respiratory tract infection http://purl.obolibrary.org/obo/MONDO_0024355
T6 488-497 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T7 569-578 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 1097-1109 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 5-10 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T2 148-151 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T3 322-329 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1 to 14
T4 336-341 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T5 526-532 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T6 622-627 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T7 661-666 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T8 682-687 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9 772-778 http://purl.obolibrary.org/obo/UBERON_0002553 denotes cavity
T10 793-794 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 847-855 http://purl.obolibrary.org/obo/CLO_0001658 denotes activate
T12 950-960 http://purl.obolibrary.org/obo/CLO_0001658 denotes activation

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 615-621 Chemical denotes corona http://purl.obolibrary.org/obo/CHEBI_37409
T2 915-924 Chemical denotes histamine http://purl.obolibrary.org/obo/CHEBI_18295|http://purl.obolibrary.org/obo/CHEBI_58432
T4 1004-1006 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T6 1034-1036 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T8 1040-1042 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T10 1049-1051 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T12 1189-1191 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 450-455 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 457-462 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T3 464-497 Phenotype denotes acute respiratory tract infection http://purl.obolibrary.org/obo/HP_0011948

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 45-57 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T2 431-443 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T3 1097-1109 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-90 Sentence denotes Mast cells contribute to coronavirus-induced inflammation: new anti-inflammatory strategy.
T2 91-216 Sentence denotes Coronavirus can cause respiratory syndrome which to date has affected about twelve thousand individuals, especially in China.
T3 217-335 Sentence denotes Coronavirus is interspecies and can also be transmitted from man to man, with an incubation ranging from 1 to 14 days.
T4 336-556 Sentence denotes Human coronavirus infections can induce not only mild to severe respiratory diseases, but also inflammation, high fever, cough, acute respiratory tract infection and dysfunction of internal organs that may lead to death.
T5 557-840 Sentence denotes Coronavirus infection (regardless of the various types of corona virus) is primarily attacked by immune cells including mast cells (MCs), which are located in the submucosa of the respiratory tract and in the nasal cavity and represent a barrier of protection against microorganisms.
T6 841-1055 Sentence denotes Viral activate MCs release early inflammatory chemical copounds including histamine and protease; while late activation provoke the generation of pro-inflammatory IL-1 family members including IL-1, IL-6 and IL-33.
T7 1056-1209 Sentence denotes Here, we propose for the first time that inflammation by coronavirus maybe inhibited by anti-inflammatory cytokines belonging to the IL-1 family members.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 25-36 Species denotes coronavirus Tax:694448
3 45-57 Disease denotes inflammation MESH:D007249
24 91-102 Species denotes Coronavirus Tax:694448
25 113-133 Disease denotes respiratory syndrome MESH:D012120
26 210-228 Species denotes China. Coronavirus Tax:2697049
27 342-364 Disease denotes coronavirus infections MESH:D018352
28 400-420 Disease denotes respiratory diseases MESH:D012140
29 431-443 Disease denotes inflammation MESH:D007249
30 445-455 Disease denotes high fever MESH:D005334
31 457-462 Disease denotes cough MESH:D003371
32 464-497 Disease denotes acute respiratory tract infection MESH:D012141
33 550-555 Disease denotes death MESH:D003643
34 557-578 Disease denotes Coronavirus infection MESH:D018352
35 615-627 Species denotes corona virus Tax:11118
36 915-924 Chemical denotes histamine MESH:D006632
37 1004-1008 Gene denotes IL-1 Gene:3552
38 1034-1038 Gene denotes IL-1 Gene:3552
39 1040-1044 Gene denotes IL-6 Gene:3569
40 1049-1054 Gene denotes IL-33 Gene:90865
41 1097-1109 Disease denotes inflammation MESH:D007249
42 1113-1124 Species denotes coronavirus Tax:694448
43 1189-1193 Gene denotes IL-1 Gene:3552