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pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 0-39 cand:WTO:0000393-Endria inimica denotes HWA1- and HWA2-Mediated Hybrid Weakness
M_1 0-39 cand:PO:0025516-phyllome lamina crena denotes HWA1- and HWA2-Mediated Hybrid Weakness
M_2 0-39 cand:PECO:0007263-Maliarpha separatella exposure denotes HWA1- and HWA2-Mediated Hybrid Weakness
M_3 0-39 cand:PECO:0007325-Hirschmaniella caudacrena exposure denotes HWA1- and HWA2-Mediated Hybrid Weakness
M_4 0-39 cand:PECO:0007260-Diopsis macrophthalma exposure denotes HWA1- and HWA2-Mediated Hybrid Weakness
M_5 0-39 cand:PECO:0007314-Nymphula depunctalis exposure denotes HWA1- and HWA2-Mediated Hybrid Weakness
M_6 0-39 cand:TO:0000604-fat and essential oil content denotes HWA1- and HWA2-Mediated Hybrid Weakness
M_7 0-39 cand:funRiceGene:155-hybrid weakness denotes HWA1- and HWA2-Mediated Hybrid Weakness
M_8 0-39 cand:TO:0000823-leaf midvein thickness denotes HWA1- and HWA2-Mediated Hybrid Weakness
M_9 0-39 cand:funRiceGene:231-auxin-mediated root development denotes HWA1- and HWA2-Mediated Hybrid Weakness
M_10 0-39 cand:WTO:0000266-single-kernel hardness denotes HWA1- and HWA2-Mediated Hybrid Weakness
M_11 305-314 cand:TO:0000036-hybrid incompatibility denotes F1 hybrid
M_12 305-314 cand:funRiceGene:273-hybrid sterility denotes F1 hybrid
M_13 305-314 cand:TO:0000111-genetically engineered male sterility denotes F1 hybrid
M_14 305-314 cand:TO:0000334-hybrid evaluation denotes F1 hybrid
M_15 305-314 cand:TO:0000724-megasporocyte development trait denotes F1 hybrid
M_16 305-314 cand:TO:0000035-incompatibility trait denotes F1 hybrid
M_17 305-314 cand:PO:0030078-rhizoid denotes F1 hybrid
M_18 305-314 cand:funRiceGene:511-flavonoid denotes F1 hybrid
M_19 305-314 cand:funRiceGene:185- BR denotes F1 hybrid
M_20 305-314 cand:PO:0025032-hydroid denotes F1 hybrid
M_21 305-314 cand:WTO:0000295-aphid denotes F1 hybrid
M_22 0-4 GeneID:GraID:GR:0060455 denotes HWA1
M_23 430-434 GeneID:GraID:GR:0060455 denotes HWA1
T66312 322-334 xzyao:1553 denotes Oryza sativa
T46513 1245-1259 funRiceGene:235 denotes photosynthesis
T47462 186-198 funRiceGene:103 denotes reproductive
T79343 69-92 funRiceGene:348, xzyao:30433 denotes Reactive Oxygen Species
T23233 1050-1073 funRiceGene:348, xzyao:30433 denotes reactive oxygen species
T1533 119-129 funRiceGene:228 denotes Resistance
T17189 1152-1162 funRiceGene:228 denotes resistance
T40245 478-491 xzyao:41869 denotes present study
T93082 763-776 xzyao:41869 denotes present study
T21973 186-208 xzyao:28228 denotes reproductive isolation
T27770 591-597 funRiceGene:129 denotes tiller
T4916 1397-1420 xzyao:24676 denotes hypersensitive response
T44177 262-268 WTO:0000021, funRiceGene:221 denotes growth
T6054 527-536 WTO:0000005 denotes phenotype
T54498 795-806 xzyao:5650 denotes SPAD values
T62651 262-284 xzyao:27826 denotes growth characteristics
T1387 691-695 PO:0025034, funRiceGene:469 denotes leaf
T95341 1006-1010 PO:0025034, funRiceGene:469 denotes leaf
T74511 1144-1176 xzyao:13897 denotes disease resistance-related genes
T9827 591-604 TO:0000346, funRiceGene:503, xzyao:9254 denotes tiller number
T17700 691-705 xzyao:15696 denotes leaf yellowing
T33235 1006-1020 xzyao:15696 denotes leaf yellowing
T48103 69-84 xzyao:38879 denotes Reactive Oxygen
T56856 1050-1065 xzyao:38879 denotes reactive oxygen
M_24 111-118 WTO:0000130, funRiceGene:18 denotes Disease
M_25 1144-1151 WTO:0000130, funRiceGene:18 denotes disease
M_26 305-314 xzyao:43215 denotes F1 hybrid
M_27 612-621 xzyao:43215 denotes F1 hybrid
M_28 666-675 xzyao:43215 denotes F1 hybrid
M_29 1120-1129 xzyao:43215 denotes F1 hybrid
M_30 69-105 xzyao:3221 denotes Reactive Oxygen Species Accumulation
M_31 833-852 TO:0000495, funRiceGene:369, xzyao:5860 denotes chlorophyll content
M_32 111-129 TO:0000112, funRiceGene:479, xzyao:38628 denotes Disease Resistance
M_33 1144-1162 TO:0000112, funRiceGene:479, xzyao:38628 denotes disease resistance
M_34 57-67 funRiceGene:394, xzyao:352 denotes Cell Death
M_35 1027-1037 funRiceGene:394, xzyao:352 denotes cell death
M_36 518-536 xzyao:18586 denotes weakness phenotype
M_37 580-586 funRiceGene:501 denotes height
M_38 24-39 funRiceGene:239, xzyao:22512 denotes Hybrid Weakness
M_39 157-172 funRiceGene:239, xzyao:22512 denotes Hybrid weakness
M_40 386-401 funRiceGene:239, xzyao:22512 denotes hybrid weakness
M_41 511-526 funRiceGene:239, xzyao:22512 denotes hybrid weakness
M_42 902-917 funRiceGene:239, xzyao:22512 denotes hybrid weakness
M_43 1333-1348 funRiceGene:239, xzyao:22512 denotes hybrid weakness
M_44 78-84 hunflair:NA:Chemical denotes Oxygen
M_45 218-228 hunflair:NA:CellLine denotes F1 hybrids
M_46 1225-1235 hunflair:NA:CellLine denotes F1 hybrids
M_47 10-23 hunflair:NA:Gene denotes HWA2-Mediated
M_48 0-4 hunflair:NA:Gene denotes HWA1
M_49 430-434 hunflair:NA:Gene denotes HWA1
M_50 946-950 hunflair:NA:Gene denotes HWA1
M_51 1369-1373 hunflair:NA:Gene denotes HWA1
M_52 10-14 hunflair:NA:Gene denotes HWA2
M_53 439-443 hunflair:NA:Gene denotes HWA2
M_54 955-959 hunflair:NA:Gene denotes HWA2
M_55 1378-1382 hunflair:NA:Gene denotes HWA2
M_56 305-314 hunflair:NA:CellLine denotes F1 hybrid
M_57 612-621 hunflair:NA:CellLine denotes F1 hybrid
M_58 666-675 hunflair:NA:CellLine denotes F1 hybrid
M_59 1120-1129 hunflair:NA:CellLine denotes F1 hybrid
M_60 164-172 hunflair:NA:Disease denotes weakness
M_61 393-401 hunflair:NA:Disease denotes weakness
M_62 518-526 hunflair:NA:Disease denotes weakness
M_63 909-917 hunflair:NA:Disease denotes weakness
M_64 1340-1348 hunflair:NA:Disease denotes weakness
M_65 43-47 hunflair:NA:Species denotes Rice
M_66 322-334 hunflair:NA:Species denotes Oryza sativa
M_67 833-844 hunflair:NA:Chemical denotes chlorophyll
M_68 1059-1065 hunflair:NA:Chemical denotes oxygen
M_69 157-172 hunflair:NA:Disease denotes Hybrid weakness
M_70 1042-1046 hunflair:NA:Chemical denotes H2O2
M_71 43-47 pubtator:4530:Species denotes Rice
M_72 1032-1037 pubtator:MESH:D003643:Disease denotes death
M_73 78-84 pubtator:MESH:D010100:Chemical denotes Oxygen
M_74 164-172 pubtator:MESH:D018908:Disease denotes weakness
M_75 393-401 pubtator:MESH:D018908:Disease denotes weakness
M_76 518-526 pubtator:MESH:D018908:Disease denotes weakness
M_77 909-917 pubtator:MESH:D018908:Disease denotes weakness
M_78 1340-1348 pubtator:MESH:D018908:Disease denotes weakness
M_79 1059-1065 pubtator:MESH:D010100:Chemical denotes oxygen
M_80 833-844 pubtator:MESH:D002734:Chemical denotes chlorophyll
M_81 322-334 pubtator:4530:Species denotes Oryza sativa
M_82 1042-1046 pubtator:MESH:D014867:Chemical denotes H2O2

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 0-4 http://identifiers.org/oryzabase.gene/155 denotes HWA1
T2 10-14 http://identifiers.org/oryzabase.gene/156 denotes HWA2
T3 430-434 http://identifiers.org/oryzabase.gene/155 denotes HWA1
T4 439-443 http://identifiers.org/oryzabase.gene/156 denotes HWA2
T5 946-950 http://identifiers.org/oryzabase.gene/155 denotes HWA1
T6 955-959 http://identifiers.org/oryzabase.gene/156 denotes HWA2
T7 1369-1373 http://identifiers.org/oryzabase.gene/155 denotes HWA1
T8 1378-1382 http://identifiers.org/oryzabase.gene/156 denotes HWA2
M_0 218-228 hunflair:NA:CellLine denotes F1 hybrids
M_1 1225-1235 hunflair:NA:CellLine denotes F1 hybrids
M_2 10-14 hunflair:NA:Gene denotes HWA2
M_3 439-443 hunflair:NA:Gene denotes HWA2
M_4 955-959 hunflair:NA:Gene denotes HWA2
M_5 1378-1382 hunflair:NA:Gene denotes HWA2
M_6 305-314 hunflair:NA:CellLine denotes F1 hybrid
M_7 612-621 hunflair:NA:CellLine denotes F1 hybrid
M_8 666-675 hunflair:NA:CellLine denotes F1 hybrid
M_9 1120-1129 hunflair:NA:CellLine denotes F1 hybrid
M_10 322-334 hunflair:NA:Species denotes Oryza sativa
M_11 43-47 hunflair:NA:Species denotes Rice
M_12 0-4 hunflair:NA:Gene denotes HWA1
M_13 430-434 hunflair:NA:Gene denotes HWA1
M_14 946-950 hunflair:NA:Gene denotes HWA1
M_15 1369-1373 hunflair:NA:Gene denotes HWA1
M_16 833-844 hunflair:NA:Chemical denotes chlorophyll
M_17 0-5 hunflair:NA:Gene denotes HWA1-
M_18 1059-1065 hunflair:NA:Chemical denotes oxygen
M_19 78-84 hunflair:NA:Chemical denotes Oxygen
M_20 1042-1046 hunflair:NA:Chemical denotes H2O2
M_21 164-172 hunflair:NA:Disease denotes weakness
M_22 393-401 hunflair:NA:Disease denotes weakness
M_23 518-526 hunflair:NA:Disease denotes weakness
M_24 909-917 hunflair:NA:Disease denotes weakness
M_25 1340-1348 hunflair:NA:Disease denotes weakness
M_26 157-172 hunflair:NA:Disease denotes Hybrid weakness
M_27 10-23 hunflair:NA:Gene denotes HWA2-Mediated

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_32 10-14 hunflair:NA:Gene denotes HWA2
M_0 218-228 xzyao:13138 denotes F1 hybrids
M_1 580-586 funRiceGene:501 denotes height
M_2 186-198 funRiceGene:103 denotes reproductive
M_3 527-536 WTO:0000005 denotes phenotype
M_4 691-695 PO:0025034, funRiceGene:469 denotes leaf
M_5 1006-1010 PO:0025034, funRiceGene:469 denotes leaf
M_6 591-604 xzyao:2610 denotes tiller number
M_7 1144-1151 WTO:0000130, funRiceGene:18 denotes disease
M_8 262-268 WTO:0000021, funRiceGene:221 denotes growth
M_9 691-705 xzyao:16121 denotes leaf yellowing
M_10 1027-1037 funRiceGene:394, xzyao:6499 denotes cell death
M_11 591-604 TO:0000346, funRiceGene:503, xzyao:2479 denotes tiller number
M_12 591-597 funRiceGene:129 denotes tiller
M_13 157-172 funRiceGene:239, xzyao:16592 denotes Hybrid weakness
M_14 386-401 funRiceGene:239, xzyao:16592 denotes hybrid weakness
M_15 511-526 funRiceGene:239, xzyao:16592 denotes hybrid weakness
M_16 902-917 funRiceGene:239, xzyao:16592 denotes hybrid weakness
M_17 1333-1348 funRiceGene:239, xzyao:16592 denotes hybrid weakness
M_18 1042-1046 hunflair:NA:Chemical denotes H2O2
M_19 164-172 hunflair:NA:Disease denotes weakness
M_20 393-401 hunflair:NA:Disease denotes weakness
M_21 518-526 hunflair:NA:Disease denotes weakness
M_22 909-917 hunflair:NA:Disease denotes weakness
M_23 1340-1348 hunflair:NA:Disease denotes weakness
M_24 305-314 hunflair:NA:CellLine denotes F1 hybrid
M_25 612-621 hunflair:NA:CellLine denotes F1 hybrid
M_26 666-675 hunflair:NA:CellLine denotes F1 hybrid
M_27 1120-1129 hunflair:NA:CellLine denotes F1 hybrid
M_28 322-334 hunflair:NA:Species denotes Oryza sativa
M_29 218-228 hunflair:NA:CellLine denotes F1 hybrids
M_30 1225-1235 hunflair:NA:CellLine denotes F1 hybrids
M_31 78-84 hunflair:NA:Chemical denotes Oxygen
M_33 439-443 hunflair:NA:Gene denotes HWA2
M_34 955-959 hunflair:NA:Gene denotes HWA2
M_35 1378-1382 hunflair:NA:Gene denotes HWA2
M_36 1059-1065 hunflair:NA:Chemical denotes oxygen
M_37 833-844 hunflair:NA:Chemical denotes chlorophyll
M_38 0-4 hunflair:NA:Gene denotes HWA1
M_39 430-434 hunflair:NA:Gene denotes HWA1
M_40 946-950 hunflair:NA:Gene denotes HWA1
M_41 1369-1373 hunflair:NA:Gene denotes HWA1
M_42 43-47 hunflair:NA:Species denotes Rice
M_43 157-172 hunflair:NA:Disease denotes Hybrid weakness
M_44 10-23 hunflair:NA:Gene denotes HWA2-Mediated
M_45 1042-1046 pubtator:MESH:D014867:Chemical denotes H2O2
M_46 833-844 pubtator:MESH:D002734:Chemical denotes chlorophyll
M_47 1032-1037 pubtator:MESH:D003643:Disease denotes death
M_48 164-172 pubtator:MESH:D018908:Disease denotes weakness
M_49 393-401 pubtator:MESH:D018908:Disease denotes weakness
M_50 518-526 pubtator:MESH:D018908:Disease denotes weakness
M_51 909-917 pubtator:MESH:D018908:Disease denotes weakness
M_52 1340-1348 pubtator:MESH:D018908:Disease denotes weakness
M_53 78-84 pubtator:MESH:D010100:Chemical denotes Oxygen
M_54 1059-1065 pubtator:MESH:D010100:Chemical denotes oxygen
M_55 322-334 pubtator:4530:Species denotes Oryza sativa
M_56 43-47 pubtator:4530:Species denotes Rice

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 0-4 http://identifiers.org/oryzabase.gene/155 denotes HWA1
T2 10-14 http://identifiers.org/oryzabase.gene/156 denotes HWA2
T3 430-434 http://identifiers.org/oryzabase.gene/155 denotes HWA1
T4 439-443 http://identifiers.org/oryzabase.gene/156 denotes HWA2
T5 946-950 http://identifiers.org/oryzabase.gene/155 denotes HWA1
T6 955-959 http://identifiers.org/oryzabase.gene/156 denotes HWA2
T7 1369-1373 http://identifiers.org/oryzabase.gene/155 denotes HWA1
T8 1378-1382 http://identifiers.org/oryzabase.gene/156 denotes HWA2

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 218-228 hunflair:NA:CellLine denotes F1 hybrids
M_1 1225-1235 hunflair:NA:CellLine denotes F1 hybrids
M_2 10-14 hunflair:NA:Gene denotes HWA2
M_3 439-443 hunflair:NA:Gene denotes HWA2
M_4 955-959 hunflair:NA:Gene denotes HWA2
M_5 1378-1382 hunflair:NA:Gene denotes HWA2
M_6 305-314 hunflair:NA:CellLine denotes F1 hybrid
M_7 612-621 hunflair:NA:CellLine denotes F1 hybrid
M_8 666-675 hunflair:NA:CellLine denotes F1 hybrid
M_9 1120-1129 hunflair:NA:CellLine denotes F1 hybrid
M_10 322-334 hunflair:NA:Species denotes Oryza sativa
M_11 43-47 hunflair:NA:Species denotes Rice
M_12 0-4 hunflair:NA:Gene denotes HWA1
M_13 430-434 hunflair:NA:Gene denotes HWA1
M_14 946-950 hunflair:NA:Gene denotes HWA1
M_15 1369-1373 hunflair:NA:Gene denotes HWA1
M_16 833-844 hunflair:NA:Chemical denotes chlorophyll
M_17 0-5 hunflair:NA:Gene denotes HWA1-
M_18 1059-1065 hunflair:NA:Chemical denotes oxygen
M_19 78-84 hunflair:NA:Chemical denotes Oxygen
M_20 1042-1046 hunflair:NA:Chemical denotes H2O2
M_21 164-172 hunflair:NA:Disease denotes weakness
M_22 393-401 hunflair:NA:Disease denotes weakness
M_23 518-526 hunflair:NA:Disease denotes weakness
M_24 909-917 hunflair:NA:Disease denotes weakness
M_25 1340-1348 hunflair:NA:Disease denotes weakness
M_26 157-172 hunflair:NA:Disease denotes Hybrid weakness
M_27 10-23 hunflair:NA:Gene denotes HWA2-Mediated

funRiceGenes-all

Id Subject Object Predicate Lexical cue
PTO-all_T1 111-129 http://purl.obolibrary.org/obo/TO_0000112 denotes Disease Resistance
PTO-all_T2 591-604 http://purl.obolibrary.org/obo/TO_0000346 denotes tiller number
PTO-all_T3 833-852 http://purl.obolibrary.org/obo/TO_0000495 denotes chlorophyll content
PTO-all_T4 1144-1162 http://purl.obolibrary.org/obo/TO_0000112 denotes disease resistance

funRiceGenes-exact

Id Subject Object Predicate Lexical cue
PTO-exact_T1 111-129 http://purl.obolibrary.org/obo/TO_0000112 denotes Disease Resistance
PTO-exact_T2 591-604 http://purl.obolibrary.org/obo/TO_0000346 denotes tiller number
PTO-exact_T3 833-852 http://purl.obolibrary.org/obo/TO_0000495 denotes chlorophyll content
PTO-exact_T4 1144-1162 http://purl.obolibrary.org/obo/TO_0000112 denotes disease resistance

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-156 Sentence denotes HWA1- and HWA2-Mediated Hybrid Weakness in Rice Involves Cell Death, Reactive Oxygen Species Accumulation, and Disease Resistance-Related Gene Upregulation.
T2 157-304 Sentence denotes Hybrid weakness is a type of reproductive isolation in which F1 hybrids of normal parents exhibit weaker growth characteristics than their parents.
T3 305-449 Sentence denotes F1 hybrid of the Oryza sativa Indian cultivars 'P.T.B.7' and 'A.D.T.14' exhibits hybrid weakness that is associated with the HWA1 and HWA2 loci.
T4 450-575 Sentence denotes Accordingly, the aim of the present study was to analyze the hybrid weakness phenotype of the 'P.T.B.7' × 'A.D.T.14' hybrids.
T5 576-745 Sentence denotes The height and tiller number of the F1 hybrid were lower than those of either parent, and F1 hybrid also exhibited leaf yellowing that was not observed in either parent.
T6 746-1021 Sentence denotes In addition, the present study demonstrates that SPAD values, an index correlated with chlorophyll content, are effective for evaluating the progression of hybrid weakness that is associated with the HWA1 and HWA2 loci because it accurately reflects degree of leaf yellowing.
T7 1022-1130 Sentence denotes Both cell death and H2O2, a reactive oxygen species, were detected in the yellowing leaves of the F1 hybrid.
T8 1131-1301 Sentence denotes Furthermore, disease resistance-related genes were upregulated in the yellowing leaves of the F1 hybrids, whereas photosynthesis-related genes tended to be downregulated.
T9 1302-1437 Sentence denotes These results suggest that the hybrid weakness associated with the HWA1 and HWA2 loci involves hypersensitive response-like mechanisms.