PubMed:31722768 JSONTXT

Annnotations TAB JSON ListView MergeView

    sonoma2

    {"project":"sonoma2","denotations":[{"id":"T0","span":{"begin":32,"end":37},"obj":"GENE"},{"id":"T1","span":{"begin":38,"end":48},"obj":"REG"},{"id":"T2","span":{"begin":59,"end":69},"obj":"REG"},{"id":"T3","span":{"begin":74,"end":82},"obj":"MPA"},{"id":"T4","span":{"begin":116,"end":124},"obj":"DISEASE"},{"id":"T5","span":{"begin":157,"end":165},"obj":"DISEASE"},{"id":"T6","span":{"begin":300,"end":318},"obj":"CPA"},{"id":"T7","span":{"begin":303,"end":318},"obj":"DISEASE"},{"id":"T8","span":{"begin":349,"end":361},"obj":"REG"},{"id":"T9","span":{"begin":362,"end":372},"obj":"MPA"},{"id":"T10","span":{"begin":382,"end":385},"obj":"REG"},{"id":"T11","span":{"begin":389,"end":397},"obj":"DISEASE"},{"id":"T12","span":{"begin":452,"end":460},"obj":"REG"},{"id":"T13","span":{"begin":477,"end":491},"obj":"REG"},{"id":"T14","span":{"begin":492,"end":507},"obj":"MPA"},{"id":"T15","span":{"begin":521,"end":529},"obj":"REG"},{"id":"T16","span":{"begin":680,"end":688},"obj":"DISEASE"},{"id":"T17","span":{"begin":726,"end":734},"obj":"REG"},{"id":"T18","span":{"begin":749,"end":763},"obj":"REG"},{"id":"T19","span":{"begin":774,"end":780},"obj":"GENE"},{"id":"T20","span":{"begin":895,"end":907},"obj":"INTERACTION"},{"id":"T21","span":{"begin":914,"end":928},"obj":"REG"},{"id":"T22","span":{"begin":963,"end":971},"obj":"REG"},{"id":"T23","span":{"begin":996,"end":1006},"obj":"NEGREG"},{"id":"T24","span":{"begin":1007,"end":1017},"obj":"REG"},{"id":"T25","span":{"begin":1038,"end":1049},"obj":"POSREG"},{"id":"T26","span":{"begin":1059,"end":1063},"obj":"GENE"},{"id":"T27","span":{"begin":1072,"end":1085},"obj":"NEGREG"},{"id":"T28","span":{"begin":1095,"end":1099},"obj":"GENE"},{"id":"T29","span":{"begin":1101,"end":1113},"obj":"REG"},{"id":"T30","span":{"begin":1114,"end":1124},"obj":"MPA"},{"id":"T31","span":{"begin":1128,"end":1135},"obj":"GENE"},{"id":"T32","span":{"begin":1140,"end":1187},"obj":"GENE"},{"id":"T33","span":{"begin":1189,"end":1194},"obj":"GENE"},{"id":"T34","span":{"begin":1202,"end":1211},"obj":"REG"},{"id":"T35","span":{"begin":1277,"end":1284},"obj":"GENE"},{"id":"T36","span":{"begin":1289,"end":1296},"obj":"GENE"},{"id":"T37","span":{"begin":1311,"end":1316},"obj":"GENE"},{"id":"T38","span":{"begin":1318,"end":1328},"obj":"REG"},{"id":"T39","span":{"begin":1339,"end":1366},"obj":"MPA"},{"id":"T40","span":{"begin":1378,"end":1388},"obj":"MPA"},{"id":"T41","span":{"begin":1392,"end":1399},"obj":"REG"},{"id":"T42","span":{"begin":1402,"end":1410},"obj":"DISEASE"},{"id":"T43","span":{"begin":1411,"end":1419},"obj":"MPA"}],"relations":[{"id":"R43","pred":"ThemeOf","subj":"T33","obj":"T34"},{"id":"R44","pred":"ThemeOf","subj":"T35","obj":"T38"},{"id":"R45","pred":"ThemeOf","subj":"T35","obj":"T39"},{"id":"R46","pred":"ThemeOf","subj":"T35","obj":"T40"},{"id":"R47","pred":"ThemeOf","subj":"T36","obj":"T38"},{"id":"R48","pred":"ThemeOf","subj":"T36","obj":"T39"},{"id":"R49","pred":"ThemeOf","subj":"T36","obj":"T40"},{"id":"R50","pred":"ThemeOf","subj":"T37","obj":"T38"},{"id":"R51","pred":"ThemeOf","subj":"T37","obj":"T39"},{"id":"R52","pred":"ThemeOf","subj":"T37","obj":"T40"},{"id":"R53","pred":"ThemeOf","subj":"T39","obj":"T38"},{"id":"R54","pred":"ThemeOf","subj":"T40","obj":"T38"},{"id":"R55","pred":"ThemeOf","subj":"T39","obj":"T40"},{"id":"R56","pred":"ThemeOf","subj":"T39","obj":"T41"},{"id":"R57","pred":"ThemeOf","subj":"T40","obj":"T41"},{"id":"R58","pred":"ThemeOf","subj":"T43","obj":"T40"},{"id":"R59","pred":"ThemeOf","subj":"T43","obj":"T41"},{"id":"R0","pred":"ThemeOf","subj":"T0","obj":"T1"},{"id":"R1","pred":"ThemeOf","subj":"T0","obj":"T3"},{"id":"R2","pred":"ThemeOf","subj":"T3","obj":"T2"},{"id":"R3","pred":"ThemeOf","subj":"T3","obj":"T1"},{"id":"R4","pred":"ThemeOf","subj":"T4","obj":"T1"},{"id":"R5","pred":"ThemeOf","subj":"T4","obj":"T2"},{"id":"R6","pred":"ThemeOf","subj":"T4","obj":"T3"},{"id":"R7","pred":"ThemeOf","subj":"T9","obj":"T8"},{"id":"R8","pred":"ThemeOf","subj":"T10","obj":"T8"},{"id":"R9","pred":"ThemeOf","subj":"T9","obj":"T10"},{"id":"R10","pred":"ThemeOf","subj":"T11","obj":"T8"},{"id":"R11","pred":"ThemeOf","subj":"T11","obj":"T9"},{"id":"R12","pred":"ThemeOf","subj":"T11","obj":"T10"},{"id":"R13","pred":"ThemeOf","subj":"T11","obj":"T12"},{"id":"R14","pred":"ThemeOf","subj":"T11","obj":"T13"},{"id":"R15","pred":"ThemeOf","subj":"T13","obj":"T12"},{"id":"R16","pred":"ThemeOf","subj":"T14","obj":"T13"},{"id":"R17","pred":"ThemeOf","subj":"T14","obj":"T12"},{"id":"R18","pred":"ThemeOf","subj":"T18","obj":"T17"},{"id":"R19","pred":"ThemeOf","subj":"T19","obj":"T18"},{"id":"R20","pred":"ThemeOf","subj":"T19","obj":"T17"},{"id":"R21","pred":"ThemeOf","subj":"T20","obj":"T21"},{"id":"R22","pred":"ThemeOf","subj":"T23","obj":"T22"},{"id":"R23","pred":"ThemeOf","subj":"T24","obj":"T23"},{"id":"R24","pred":"ThemeOf","subj":"T25","obj":"T24"},{"id":"R25","pred":"ThemeOf","subj":"T25","obj":"T27"},{"id":"R26","pred":"ThemeOf","subj":"T26","obj":"T23"},{"id":"R27","pred":"ThemeOf","subj":"T26","obj":"T24"},{"id":"R28","pred":"ThemeOf","subj":"T26","obj":"T25"},{"id":"R29","pred":"ThemeOf","subj":"T26","obj":"T27"},{"id":"R30","pred":"ThemeOf","subj":"T28","obj":"T24"},{"id":"R31","pred":"ThemeOf","subj":"T28","obj":"T25"},{"id":"R32","pred":"ThemeOf","subj":"T28","obj":"T27"},{"id":"R33","pred":"ThemeOf","subj":"T30","obj":"T29"},{"id":"R34","pred":"ThemeOf","subj":"T30","obj":"T34"},{"id":"R35","pred":"ThemeOf","subj":"T31","obj":"T29"},{"id":"R36","pred":"ThemeOf","subj":"T31","obj":"T30"},{"id":"R37","pred":"ThemeOf","subj":"T31","obj":"T34"},{"id":"R38","pred":"ThemeOf","subj":"T32","obj":"T29"},{"id":"R39","pred":"ThemeOf","subj":"T32","obj":"T30"},{"id":"R40","pred":"ThemeOf","subj":"T32","obj":"T34"},{"id":"R41","pred":"ThemeOf","subj":"T33","obj":"T29"},{"id":"R42","pred":"ThemeOf","subj":"T33","obj":"T30"},{"id":"R60","pred":"ThemeOf","subj":"T42","obj":"T38"},{"id":"R61","pred":"ThemeOf","subj":"T42","obj":"T39"},{"id":"R62","pred":"ThemeOf","subj":"T42","obj":"T40"},{"id":"R63","pred":"ThemeOf","subj":"T42","obj":"T41"},{"id":"R64","pred":"ThemeOf","subj":"T42","obj":"T43"},{"id":"R65","pred":"ThemeOf","subj":"T43","obj":"T38"}],"text":"Screening candidate microR-15a- IRAK2 regulatory pairs for predicting the response to Staphylococcus aureus-induced mastitis in dairy cows.\nWe established a mastitis model using exogenous infection of the mammary gland of Chinese Holstein cows with Staphylococcus aureus and extracted total RNA from S. aureus-infected and healthy mammary quarters. Differential expression of genes due to mastitis was evaluated using Affymetrix technology and results revealed a total of 1230 differentially expressed mRNAs. A subset of affected genes was verified via Q-PCR and pathway analysis. In addition, Solexa high-throughput sequencing technology was used to analyze profiles of miRNA in infected and healthy quarters. These analyses revealed a total of 52 differentially expressed miRNAs. A subset of those results was verified via Q-PCR. Bioinformatics techniques were used to predict and analyze the correlations among differentially expressed miRNA and mRNA. Results revealed a total of 329 pairs of negatively associated miRNA/mRNA, with 31 upregulated pairs of mRNA and 298 downregulated pairs of mRNA. Differential expression of miR-15a and interleukin-1 receptor-associated kinase-like 2 (IRAK2), were evaluated by western blot and luciferase reporter assays. We conclude that miR-15a and miR-15a target genes (IRAK2) constitute potential miRNA-mRNA regulatory pairs for use as biomarkers to predict a mastitis response."}