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PubMed:31241704 JSONTXT

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PubMed_ArguminSci

Id Subject Object Predicate Lexical cue
T1 125-226 DRI_Background denotes DNA methylation is essential for spatiotemporally-regulated gene expression in embryonic development.
T2 227-408 DRI_Approach denotes TBX22 (Chr X: 107667964-107688978) functioning as a transcriptional repressor affects DNA binding, sumoylation, and transcriptional repression associated with X-linked cleft palate.
T3 409-579 DRI_Background denotes This study aimed to explore the relationship and potential mechanism between TBX22 exon 5 methylation and palatal shelf fusion induced by all-trans retinoic acid (ATRA).
T4 580-823 DRI_Background denotes We performed DNA methylation profiling, using MethylRAD-seq, after high throughput sequencing of mouse embryos from control (n=9) and ATRA-treated (to induce cleft palate, n=9) C57BL/6J mice at embryonic gestation days(E) 13.5, 14.5 and 16.5.
T5 824-964 DRI_Background denotes TBX22 exon 5 was hyper-methylated at the CpG site at E13.5 (P=0.025, log2FC=1.5) and E14.5 (P=0.011, log2FC:1.5) in ATRA-treated, whereas
T6 984-1104 DRI_Background denotes exon 5 at the CpG site was not significantly different at E16.5 (P=0.808, log2FC=-0.2) between control and ATRA-treated.
T7 1183-1302 DRI_Outcome denotes qPCR showed the change in TBX22 exon 5 expression level negatively correlated with its TBX22 exon 5 methylation level.
T8 1303-1538 DRI_Background denotes These results indicate that changes in TBX22 exon 5 methylation might play an important regulatory role during palatal shelf fusion, and may enlighten the development of novel epigenetic biomarkers in the treatment of CP in the future.

GoldHamster

Id Subject Object Predicate Lexical cue
T1 39-44 PR:Q8K402 denotes TBX22
T2 39-44 PR:000016150 denotes TBX22
T3 39-44 PR:Q9Y458 denotes TBX22
T5 45-49 SO:0000147 denotes exon
T4 45-49 PR:P33696 denotes exon
T7 52-63 GO:0032259 denotes methylation
T6 52-63 MOP:0000364 denotes methylation
T8 68-81 UBERON:0005619 denotes palatal shelf
T10 82-88 SO:0000806 denotes fusion
T12 111-123 UBERON:0010426 denotes cleft palate
T11 111-123 D002972 denotes cleft palate
T13 111-123 D002972 denotes cleft palate
T14 111-123 C566991 denotes cleft palate
T19 129-140 GO:0032259 denotes methylation
T18 129-140 MOP:0000364 denotes methylation
T20 175-184 SO:0000119 denotes regulated
T21 185-189 SO:0000704 denotes gene
T22 185-200 GO:0010467 denotes gene expression
T23 204-213 P02301 denotes embryonic
T24 204-213 PR:000029532 denotes embryonic
T25 227-232 PR:Q8K402 denotes TBX22
T26 227-232 PR:000016150 denotes TBX22
T27 227-232 PR:Q9Y458 denotes TBX22
T30 313-316 SO:0000352 denotes DNA
T28 313-316 GO:0005574 denotes DNA
T29 313-316 CHEBI:16991 denotes DNA
T31 313-316 D004247 denotes DNA
T32 313-324 GO:0003677 denotes DNA binding
T33 317-324 SO:0100018 denotes binding
T34 317-324 SO:0001091 denotes binding
T36 326-337 GO:0016925 denotes sumoylation
T37 386-407 C536426 denotes X-linked cleft palate
T38 386-407 C536426 denotes X-linked cleft palate
T40 395-407 UBERON:0010426 denotes cleft palate
T46 486-491 PR:Q8K402 denotes TBX22
T47 486-491 PR:000016150 denotes TBX22
T48 486-491 PR:Q9Y458 denotes TBX22
T50 492-496 SO:0000147 denotes exon
T49 492-496 PR:P33696 denotes exon
T52 499-510 GO:0032259 denotes methylation
T51 499-510 MOP:0000364 denotes methylation
T53 515-528 UBERON:0005619 denotes palatal shelf
T55 529-535 SO:0000806 denotes fusion
T56 548-571 D014212 denotes all-trans retinoic acid
T57 548-571 CHEBI:15367 denotes all-trans retinoic acid
T58 548-571 D014212 denotes all-trans retinoic acid
T69 594-597 SO:0000352 denotes DNA
T67 594-597 GO:0005574 denotes DNA
T68 594-597 CHEBI:16991 denotes DNA
T70 594-597 D004247 denotes DNA
T71 594-609 GO:0006306 denotes DNA methylation
T72 598-609 MOP:0000364 denotes methylation
T74 678-683 10090 denotes mouse
T75 678-683 D051379 denotes mouse
T77 739-751 UBERON:0010426 denotes cleft palate
T76 739-751 D002972 denotes cleft palate
T78 739-751 D002972 denotes cleft palate
T79 739-751 C566991 denotes cleft palate
T83 761-765 CVCL_M564 denotes BL/6
T84 761-765 CVCL_0157 denotes BL/6
T86 761-765 CVCL_2637 denotes BL/6
T85 761-765 P12877 denotes BL/6
T88 767-771 D051379 denotes mice
T90 767-771 10095 denotes mice
T87 767-771 PR:000005054 denotes mice
T89 767-771 O89094 denotes mice
T91 775-784 P02301 denotes embryonic
T92 775-784 PR:000029532 denotes embryonic
T93 785-794 GO:0007565 denotes gestation
T94 800-805 PR:Q7TNS8 denotes E) 13
T95 800-805 Q38488 denotes E) 13
T96 831-835 PR:P33696 denotes exon
T97 831-835 SO:0000147 denotes exon
T98 867-870 CVCL_1G78 denotes CpG
T99 879-882 PR:Q7TNS8 denotes E13
T100 879-882 Q38488 denotes E13
T101 895-899 PR:Q5BPS0 denotes log2
T102 895-899 PR:Q9S752 denotes log2
T104 911-914 PR:000011353 denotes E14
T105 911-914 PR:Q14207 denotes E14
T106 911-914 Q38490 denotes E14
T107 911-914 CVCL_C320 denotes E14
T108 927-931 PR:Q5BPS0 denotes log2
T109 927-931 PR:Q9S752 denotes log2
T110 931-935 PR:P42043 denotes FC:1
T111 978-983 PR:Q8K402 denotes TBX22
T112 978-983 PR:000016150 denotes TBX22
T113 978-983 PR:Q9Y458 denotes TBX22
T114 984-988 PR:P33696 denotes exon
T115 984-988 SO:0000147 denotes exon
T116 989-993 Q9ZWR8 denotes 5 at
T117 998-1001 CVCL_1G78 denotes CpG
T118 1042-1045 Q01650 denotes E16
T119 1058-1062 PR:Q5BPS0 denotes log2
T120 1058-1062 PR:Q9S752 denotes log2
T121 1105-1108 Q21244 denotes MSP
T122 1105-1108 Q24K22 denotes MSP
T123 1105-1108 P53020 denotes MSP
T124 1105-1108 PR:P0A9Q1 denotes MSP
T125 1105-1108 Q19832 denotes MSP
T126 1105-1108 P13907 denotes MSP
T127 1105-1108 P11472 denotes MSP
T128 1105-1108 P53019 denotes MSP
T129 1105-1108 PR:000010683 denotes MSP
T130 1105-1108 PR:Q5U405 denotes MSP
T131 1105-1108 P26927 denotes MSP
T132 1105-1108 P10549 denotes MSP
T133 1105-1108 P26928 denotes MSP
T134 1105-1108 PR:000022123 denotes MSP
T135 1105-1108 PR:Q9BYE2 denotes MSP
T136 1105-1108 P53017 denotes MSP
T137 1105-1108 Q9TVW5 denotes MSP
T138 1105-1108 P53018 denotes MSP
T139 1105-1108 P0A431 denotes MSP
T140 1105-1108 P0A432 denotes MSP
T141 1105-1108 Q23519 denotes MSP
T142 1105-1108 Q17856 denotes MSP
T143 1105-1108 Q94053 denotes MSP
T144 1105-1108 D0VWR2 denotes MSP
T145 1105-1108 Q18461 denotes MSP
T146 1105-1108 Q9R6W6 denotes MSP
T147 1105-1108 P05634 denotes MSP
T148 1105-1108 PR:000016455 denotes MSP
T149 1105-1108 PR:Q86KP5 denotes MSP
T150 1209-1214 PR:Q8K402 denotes TBX22
T151 1209-1214 PR:000016150 denotes TBX22
T152 1209-1214 PR:Q9Y458 denotes TBX22
T153 1215-1219 PR:P33696 denotes exon
T154 1215-1219 SO:0000147 denotes exon
T155 1270-1275 PR:Q8K402 denotes TBX22
T156 1270-1275 PR:000016150 denotes TBX22
T157 1270-1275 PR:Q9Y458 denotes TBX22
T158 1277-1281 PR:P33696 denotes exon
T159 1277-1281 SO:0000147 denotes exon
T161 1284-1295 GO:0032259 denotes methylation
T160 1284-1295 MOP:0000364 denotes methylation
T162 1342-1347 PR:Q8K402 denotes TBX22
T163 1342-1347 PR:000016150 denotes TBX22
T164 1342-1347 PR:Q9Y458 denotes TBX22
T166 1348-1352 SO:0000147 denotes exon
T165 1348-1352 PR:P33696 denotes exon
T168 1355-1366 GO:0032259 denotes methylation
T167 1355-1366 MOP:0000364 denotes methylation
T169 1414-1427 UBERON:0005619 denotes palatal shelf
T171 1428-1434 SO:0000806 denotes fusion
T172 1490-1500 D015415 denotes biomarkers
T173 1490-1500 D015415 denotes biomarkers

Goldhamster2_Cellosaurus

Id Subject Object Predicate Lexical cue
T1 277-278 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T2 581-583 CVCL_5M23|Cancer_cell_line|Mesocricetus auratus denotes We
T3 678-683 CVCL_ZE35|Undefined_cell_line_type|Mus musculus denotes mouse
T4 706-709 CVCL_0452|Transformed_cell_line|Mus musculus denotes n=9
T5 753-756 CVCL_0452|Transformed_cell_line|Mus musculus denotes n=9
T6 867-870 CVCL_1G78|Spontaneously_immortalized_cell_line|Channa punctata denotes CpG
T7 989-993 CVCL_Y661|Cancer_cell_line|Rattus norvegicus denotes 5 at
T8 998-1001 CVCL_1G78|Spontaneously_immortalized_cell_line|Channa punctata denotes CpG
T9 1124-1125 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T10 1199-1205 CVCL_0238|Cancer_cell_line|Homo sapiens denotes change
T11 1331-1338 CVCL_0238|Cancer_cell_line|Homo sapiens denotes changes
T12 1378-1380 CVCL_8754|Cancer_cell_line|Homo sapiens denotes an
T13 1378-1380 CVCL_H241|Cancer_cell_line|Homo sapiens denotes an
T14 1440-1443 CVCL_E773|Transformed_cell_line|Homo sapiens denotes may
T15 1521-1523 CVCL_6F78|Spontaneously_immortalized_cell_line|Anabas testudineus denotes CP