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PubMed:30715580 JSONTXT

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pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 1790-1806 xzyao:28455 denotes sucrose synthase
M_1 185-195 xzyao:13460 denotes waxy locus
M_2 460-467 WTO:0000048, funRiceGene:27 denotes quality
M_3 899-920 xzyao:12060 denotes bound starch synthase
M_4 453-467 xzyao:42801 denotes starch quality
M_5 588-605 xzyao:5297 denotes starch metabolism
M_6 760-777 xzyao:5297 denotes starch metabolism
M_7 1617-1622 funRiceGene:91 denotes grain
M_8 1790-1797 funRiceGene:256 denotes sucrose
M_9 891-920 xzyao:28446 denotes granule-bound starch synthase
M_10 1790-1815 xzyao:27428 denotes sucrose synthase activity
M_11 126-145 funRiceGene:102, xzyao:20491 denotes starch biosynthesis
M_12 400-419 funRiceGene:102, xzyao:20491 denotes starch biosynthesis
M_13 1431-1446 TO:0000196, xzyao:37574 denotes amylose content
M_14 116-132 xzyao:32001 denotes endosperm starch
M_15 541-557 xzyao:32001 denotes endosperm starch
M_16 230-243 xzyao:24313 denotes GBSS activity
M_17 1231-1244 xzyao:24313 denotes GBSS activity
M_18 1324-1337 xzyao:24313 denotes GBSS activity
M_19 609-619 funRiceGene:54 denotes vegetative
M_20 39-49 xzyao:32229 denotes GBSSI gene
M_21 126-132 funRiceGene:143 denotes starch
M_22 340-346 funRiceGene:143 denotes starch
M_23 400-406 funRiceGene:143 denotes starch
M_24 453-459 funRiceGene:143 denotes starch
M_25 551-557 funRiceGene:143 denotes starch
M_26 588-594 funRiceGene:143 denotes starch
M_27 760-766 funRiceGene:143 denotes starch
M_28 905-911 funRiceGene:143 denotes starch
M_29 1038-1044 funRiceGene:143 denotes starch
M_30 1610-1616 funRiceGene:143 denotes starch
M_31 1660-1666 funRiceGene:143 denotes starch
M_32 1859-1865 funRiceGene:143 denotes starch
M_33 199-213 xzyao:39115 denotes rice endosperm
M_34 934-948 xzyao:39115 denotes rice endosperm
M_35 1581-1595 PO:0005360, xzyao:22422 denotes aleurone layer
M_36 116-125 PO:0009089, funRiceGene:253 denotes endosperm
M_37 204-213 PO:0009089, funRiceGene:253 denotes endosperm
M_38 283-292 PO:0009089, funRiceGene:253 denotes endosperm
M_39 541-550 PO:0009089, funRiceGene:253 denotes endosperm
M_40 939-948 PO:0009089, funRiceGene:253 denotes endosperm
M_41 1164-1173 PO:0009089, funRiceGene:253 denotes endosperm
M_42 407-427 xzyao:36787 denotes biosynthesis pathway
M_43 230-234 hunflair:NA:Gene denotes GBSS
M_44 1231-1235 hunflair:NA:Gene denotes GBSS
M_45 1324-1328 hunflair:NA:Gene denotes GBSS
M_46 1312-1318 hunflair:NA:Gene denotes GBSSII
M_47 1790-1797 hunflair:NA:Chemical denotes sucrose
M_48 29-33 hunflair:NA:Species denotes rice
M_49 199-203 hunflair:NA:Species denotes rice
M_50 934-938 hunflair:NA:Species denotes rice
M_51 39-44 hunflair:NA:Gene denotes GBSSI
M_52 924-929 hunflair:NA:Gene denotes GBSSI
M_53 1151-1156 hunflair:NA:Gene denotes GBSSI
M_54 34-38 hunflair:NA:Gene denotes Waxy
M_55 866-870 hunflair:NA:Gene denotes Waxy
M_56 1878-1884 hunflair:NA:Chemical denotes sugars
M_57 1779-1785 hunflair:NA:Gene denotes AGPase
M_58 185-189 hunflair:NA:Gene denotes waxy
M_59 905-922 hunflair:NA:Gene denotes starch synthase I
M_60 1790-1806 hunflair:NA:Gene denotes sucrose synthase
M_61 1878-1884 pubtator:MESH:D002241:Chemical denotes sugars
M_62 1790-1797 pubtator:MESH:D013395:Chemical denotes sucrose
M_63 29-33 pubtator:4530:Species denotes rice
M_64 199-203 pubtator:4530:Species denotes rice
M_65 934-938 pubtator:4530:Species denotes rice

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 609-619 funRiceGene:54 denotes vegetative
M_1 891-911 xzyao:9221 denotes granule-bound starch
M_2 460-467 WTO:0000048, funRiceGene:27 denotes quality
M_3 340-346 funRiceGene:143 denotes starch
M_4 400-406 funRiceGene:143 denotes starch
M_5 453-459 funRiceGene:143 denotes starch
M_6 551-557 funRiceGene:143 denotes starch
M_7 588-594 funRiceGene:143 denotes starch
M_8 760-766 funRiceGene:143 denotes starch
M_9 905-911 funRiceGene:143 denotes starch
M_10 1038-1044 funRiceGene:143 denotes starch
M_11 1610-1616 funRiceGene:143 denotes starch
M_12 1660-1666 funRiceGene:143 denotes starch
M_13 1859-1865 funRiceGene:143 denotes starch
M_14 1431-1446 xzyao:2145 denotes amylose content
M_15 1617-1622 funRiceGene:91 denotes grain
M_16 541-557 xzyao:10764 denotes endosperm starch
M_17 1790-1797 funRiceGene:256 denotes sucrose
M_18 204-213 PO:0009089, funRiceGene:253 denotes endosperm
M_19 283-292 PO:0009089, funRiceGene:253 denotes endosperm
M_20 541-550 PO:0009089, funRiceGene:253 denotes endosperm
M_21 185-195 xzyao:1736 denotes waxy locus
M_22 199-213 xzyao:4731 denotes rice endosperm
M_23 400-419 funRiceGene:102, xzyao:10310 denotes starch biosynthesis
M_24 1431-1446 TO:0000196, xzyao:11214 denotes amylose content
M_25 1581-1595 PO:0005360, xzyao:351 denotes aleurone layer
M_26 1312-1318 hunflair:NA:Gene denotes GBSSII
M_27 185-189 hunflair:NA:Gene denotes waxy
M_28 905-922 hunflair:NA:Gene denotes starch synthase I
M_29 29-33 hunflair:NA:Species denotes rice
M_30 199-203 hunflair:NA:Species denotes rice
M_31 934-938 hunflair:NA:Species denotes rice
M_32 39-44 hunflair:NA:Gene denotes GBSSI
M_33 924-929 hunflair:NA:Gene denotes GBSSI
M_34 1151-1156 hunflair:NA:Gene denotes GBSSI
M_35 1790-1797 hunflair:NA:Chemical denotes sucrose
M_36 1790-1806 hunflair:NA:Gene denotes sucrose synthase
M_37 34-38 hunflair:NA:Gene denotes Waxy
M_38 866-870 hunflair:NA:Gene denotes Waxy
M_39 1779-1785 hunflair:NA:Gene denotes AGPase
M_40 230-234 hunflair:NA:Gene denotes GBSS
M_41 1231-1235 hunflair:NA:Gene denotes GBSS
M_42 1324-1328 hunflair:NA:Gene denotes GBSS
M_43 1878-1884 hunflair:NA:Chemical denotes sugars
M_44 1790-1797 pubtator:MESH:D013395:Chemical denotes sucrose
M_45 29-33 pubtator:4530:Species denotes rice
M_46 199-203 pubtator:4530:Species denotes rice
M_47 934-938 pubtator:4530:Species denotes rice
M_48 1878-1884 pubtator:MESH:D002241:Chemical denotes sugars

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 39-44 http://identifiers.org/oryzabase.gene/744 denotes GBSSI
T2 230-234 http://identifiers.org/oryzabase.gene/744 denotes GBSS
T3 872-874 http://identifiers.org/oryzabase.gene/744 denotes Wx
T4 924-929 http://identifiers.org/oryzabase.gene/744 denotes GBSSI
T5 1151-1156 http://identifiers.org/oryzabase.gene/744 denotes GBSSI
T6 1231-1235 http://identifiers.org/oryzabase.gene/744 denotes GBSS
T7 1312-1318 http://identifiers.org/oryzabase.gene/8901 denotes GBSSII
T8 1324-1328 http://identifiers.org/oryzabase.gene/744 denotes GBSS
T59326 39-44 http://identifiers.org/rapdb.locus/Os06g0133000 denotes GBSSI
T28765 230-234 http://identifiers.org/rapdb.locus/Os06g0133000 denotes GBSS
T23608 872-874 http://identifiers.org/rapdb.locus/Os06g0133000 denotes Wx
T53829 924-929 http://identifiers.org/rapdb.locus/Os06g0133000 denotes GBSSI
T3964 1151-1156 http://identifiers.org/rapdb.locus/Os06g0133000 denotes GBSSI
T43982 1231-1235 http://identifiers.org/rapdb.locus/Os06g0133000 denotes GBSS
T5183 1312-1318 http://identifiers.org/rapdb.locus/Os07g0412100 denotes GBSSII
T82030 1324-1328 http://identifiers.org/rapdb.locus/Os06g0133000 denotes GBSS

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 1790-1806 hunflair:NA:Gene denotes sucrose synthase
M_1 185-189 hunflair:NA:Gene denotes waxy
M_2 1790-1797 hunflair:NA:Chemical denotes sucrose
M_3 39-44 hunflair:NA:Gene denotes GBSSI
M_4 924-929 hunflair:NA:Gene denotes GBSSI
M_5 1151-1156 hunflair:NA:Gene denotes GBSSI
M_6 34-38 hunflair:NA:Gene denotes Waxy
M_7 866-870 hunflair:NA:Gene denotes Waxy
M_8 1312-1318 hunflair:NA:Gene denotes GBSSII
M_9 1878-1884 hunflair:NA:Chemical denotes sugars
M_10 29-33 hunflair:NA:Species denotes rice
M_11 199-203 hunflair:NA:Species denotes rice
M_12 934-938 hunflair:NA:Species denotes rice
M_13 905-922 hunflair:NA:Gene denotes starch synthase I
M_14 1779-1785 hunflair:NA:Gene denotes AGPase
M_15 230-234 hunflair:NA:Gene denotes GBSS
M_16 1231-1235 hunflair:NA:Gene denotes GBSS
M_17 1324-1328 hunflair:NA:Gene denotes GBSS

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 34-38 http://identifiers.org/oryzabase.gene/744 denotes Waxy
T2 39-44 http://identifiers.org/oryzabase.gene/744 denotes GBSSI
T3 185-189 http://identifiers.org/oryzabase.gene/744 denotes waxy
T4 230-234 http://identifiers.org/oryzabase.gene/744 denotes GBSS
T5 866-870 http://identifiers.org/oryzabase.gene/744 denotes Waxy
T6 872-874 http://identifiers.org/oryzabase.gene/744 denotes Wx
T7 891-922 http://identifiers.org/oryzabase.gene/744 denotes granule-bound starch synthase I
T8 924-929 http://identifiers.org/oryzabase.gene/744 denotes GBSSI
T9 1151-1156 http://identifiers.org/oryzabase.gene/744 denotes GBSSI
T10 1231-1235 http://identifiers.org/oryzabase.gene/744 denotes GBSS
T11 1312-1318 http://identifiers.org/oryzabase.gene/8901 denotes GBSSII
T12 1324-1328 http://identifiers.org/oryzabase.gene/744 denotes GBSS
T43959 34-38 http://identifiers.org/ricegap/LOC_Os06g04200 denotes Waxy
T53516 39-44 http://identifiers.org/ricegap/LOC_Os06g04200 denotes GBSSI
T44585 185-189 http://identifiers.org/ricegap/LOC_Os06g04200 denotes waxy
T5376 230-234 http://identifiers.org/ricegap/LOC_Os06g04200 denotes GBSS
T97957 866-870 http://identifiers.org/ricegap/LOC_Os06g04200 denotes Waxy
T85883 872-874 http://identifiers.org/ricegap/LOC_Os06g04200 denotes Wx
T60421 891-922 http://identifiers.org/ricegap/LOC_Os06g04200 denotes granule-bound starch synthase I
T22893 924-929 http://identifiers.org/ricegap/LOC_Os06g04200 denotes GBSSI
T3240 1151-1156 http://identifiers.org/ricegap/LOC_Os06g04200 denotes GBSSI
T78658 1231-1235 http://identifiers.org/ricegap/LOC_Os06g04200 denotes GBSS
T60022 1312-1318 http://identifiers.org/ricegap/LOC_Os07g22930 denotes GBSSII
T93750 1324-1328 http://identifiers.org/ricegap/LOC_Os06g04200 denotes GBSS
T71780 34-38 http://identifiers.org/rapdb.locus/Os06g0133000 denotes Waxy
T79380 39-44 http://identifiers.org/rapdb.locus/Os06g0133000 denotes GBSSI
T68759 185-189 http://identifiers.org/rapdb.locus/Os06g0133000 denotes waxy
T54810 230-234 http://identifiers.org/rapdb.locus/Os06g0133000 denotes GBSS
T17996 866-870 http://identifiers.org/rapdb.locus/Os06g0133000 denotes Waxy
T99147 872-874 http://identifiers.org/rapdb.locus/Os06g0133000 denotes Wx
T42201 891-922 http://identifiers.org/rapdb.locus/Os06g0133000 denotes granule-bound starch synthase I
T58161 924-929 http://identifiers.org/rapdb.locus/Os06g0133000 denotes GBSSI
T45394 1151-1156 http://identifiers.org/rapdb.locus/Os06g0133000 denotes GBSSI
T50848 1231-1235 http://identifiers.org/rapdb.locus/Os06g0133000 denotes GBSS
T23928 1312-1318 http://identifiers.org/rapdb.locus/Os07g0412100 denotes GBSSII
T38573 1324-1328 http://identifiers.org/rapdb.locus/Os06g0133000 denotes GBSS
T53869 34-38 http://identifiers.org/uniprot/Q0DEV5 denotes Waxy
T58637 39-44 http://identifiers.org/uniprot/Q0DEV5 denotes GBSSI
T99371 185-189 http://identifiers.org/uniprot/Q0DEV5 denotes waxy
T16880 230-234 http://identifiers.org/uniprot/Q0DEV5 denotes GBSS
T35595 866-870 http://identifiers.org/uniprot/Q0DEV5 denotes Waxy
T68476 872-874 http://identifiers.org/uniprot/Q0DEV5 denotes Wx
T19169 891-922 http://identifiers.org/uniprot/Q0DEV5 denotes granule-bound starch synthase I
T60708 924-929 http://identifiers.org/uniprot/Q0DEV5 denotes GBSSI
T56637 1151-1156 http://identifiers.org/uniprot/Q0DEV5 denotes GBSSI
T7118 1231-1235 http://identifiers.org/uniprot/Q0DEV5 denotes GBSS
T44437 1312-1318 http://identifiers.org/uniprot/Q8VYU1 denotes GBSSII
T64474 1312-1318 http://identifiers.org/uniprot/Q8GTK0 denotes GBSSII
T13 1312-1318 http://identifiers.org/uniprot/D0TZD9 denotes GBSSII
T14 1324-1328 http://identifiers.org/uniprot/Q0DEV5 denotes GBSS
M_0 1790-1806 hunflair:NA:Gene denotes sucrose synthase
M_1 185-189 hunflair:NA:Gene denotes waxy
M_2 1790-1797 hunflair:NA:Chemical denotes sucrose
M_3 39-44 hunflair:NA:Gene denotes GBSSI
M_4 924-929 hunflair:NA:Gene denotes GBSSI
M_5 1151-1156 hunflair:NA:Gene denotes GBSSI
M_6 34-38 hunflair:NA:Gene denotes Waxy
M_7 866-870 hunflair:NA:Gene denotes Waxy
M_8 1312-1318 hunflair:NA:Gene denotes GBSSII
M_9 1878-1884 hunflair:NA:Chemical denotes sugars
M_10 29-33 hunflair:NA:Species denotes rice
M_11 199-203 hunflair:NA:Species denotes rice
M_12 934-938 hunflair:NA:Species denotes rice
M_13 905-922 hunflair:NA:Gene denotes starch synthase I
M_14 1779-1785 hunflair:NA:Gene denotes AGPase
M_15 230-234 hunflair:NA:Gene denotes GBSS
M_16 1231-1235 hunflair:NA:Gene denotes GBSS
M_17 1324-1328 hunflair:NA:Gene denotes GBSS

funRiceGenes-all

Id Subject Object Predicate Lexical cue
PTO-all_T1 126-132 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T2 340-346 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T3 400-406 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T4 453-459 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T5 551-557 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T6 588-594 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T7 760-766 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T8 905-911 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T9 1038-1044 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T10 1431-1446 http://purl.obolibrary.org/obo/TO_0000196 denotes amylose content
PTO-all_T11 1610-1616 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T12 1660-1666 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T13 1859-1865 http://purl.obolibrary.org/obo/TO_0000698 denotes starch

funRiceGenes-exact

Id Subject Object Predicate Lexical cue
PTO-exact_T1 1431-1446 http://purl.obolibrary.org/obo/TO_0000196 denotes amylose content

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-146 Sentence denotes CRISPR/Cas9 mutations in the rice Waxy/GBSSI gene induce allele-specific and zygosity-dependent feedback effects on endosperm starch biosynthesis.
T2 147-159 Sentence denotes KEY MESSAGE:
T3 160-255 Sentence denotes Induced mutations in the waxy locus in rice endosperm did not abolish GBSS activity completely.
T4 256-370 Sentence denotes Compensatory mechanisms in endosperm and leaves caused a major reprogramming of the starch biosynthetic machinery.
T5 371-527 Sentence denotes The mutation of genes in the starch biosynthesis pathway has a profound effect on starch quality and quantity and is an important target for plant breeders.
T6 528-724 Sentence denotes Mutations in endosperm starch biosynthetic genes may impact starch metabolism in vegetative tissues such as leaves in unexpected ways due to the complex feedback mechanisms regulating the pathway.
T7 725-808 Sentence denotes Surprisingly this aspect of global starch metabolism has received little attention.
T8 809-949 Sentence denotes We used CRISPR/Cas9 to introduce mutations affecting the Waxy (Wx) locus encoding granule-bound starch synthase I (GBSSI) in rice endosperm.
T9 950-1174 Sentence denotes Our specific objective was to develop a mechanistic understanding of how the endogenous starch biosynthetic machinery might be affected at the transcriptional level following the targeted knock out of GBSSI in the endosperm.
T10 1175-1319 Sentence denotes We found that the mutations reduced but did not abolish GBSS activity in seeds due to partial compensation caused by the upregulation of GBSSII.
T11 1320-1634 Sentence denotes The GBSS activity in the mutants was 61-71% of wild-type levels, similarly to two irradiation mutants, but the amylose content declined to 8-12% in heterozygous seeds and to as low as 5% in homozygous seeds, accompanied by abnormal cellular organization in the aleurone layer and amorphous starch grain structures.
T12 1635-1720 Sentence denotes Expression of many other starch biosynthetic genes was modulated in seeds and leaves.
T13 1721-1885 Sentence denotes This modulation of gene expression resulted in changes in AGPase and sucrose synthase activity that explained the corresponding levels of starch and soluble sugars.