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Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 566-572 http://purl.obolibrary.org/obo/MAT_0000119 denotes kidney
T2 683-693 http://purl.obolibrary.org/obo/MAT_0000043 denotes intestinal
T3 1466-1476 http://purl.obolibrary.org/obo/MAT_0000043 denotes intestinal

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-135 Sentence denotes Structure and biological activities of a hexosamine-rich cell wall polysaccharide isolated from the probiotic Lactobacillus farciminis.
TextSentencer_T2 136-231 Sentence denotes Lactobacillus farciminis CIP 103136 is a bacterial strain with recognized probiotic properties.
TextSentencer_T3 232-319 Sentence denotes However, the mechanisms underlying such properties have only been partially elucidated.
TextSentencer_T4 320-449 Sentence denotes In this study, we isolated and purified a cell-wall associated polysaccharide (CWPS), and evaluated its biological role in vitro.
TextSentencer_T5 450-747 Sentence denotes The structure of CWPS and responses from stimulation of (i) human macrophage-like THP-1 cells, (ii) human embryonal kidney (HEK293) cells stably transfected with Toll-like receptors (TLR2 or TLR4) and (iii) human colonocyte-like T84 intestinal epithelial cells, upon exposure to CWPS were studied.
TextSentencer_T6 748-957 Sentence denotes The structure of the purified CWPS from L. farciminis CIP 103136 was analyzed by nuclear magnetic resonance (NMR), MALDI-TOF-TOF MS, and methylation analyses in its native form and following Smith degradation.
TextSentencer_T7 958-1185 Sentence denotes It was shown to be a novel branched polysaccharide, composed of linear backbone of trisaccharide repeating units of: [→6αGlcpNAc1 → 4βManpNAc1 → 4βGlcpNAc1→] highly substituted with single residues of αGlcp, αGalp and αGlcpNAc.
TextSentencer_T8 1186-1304 Sentence denotes Subsequently, the lack of pro- or anti-inflammatory properties of CWPS was established on macrophage-like THP-1 cells.
TextSentencer_T9 1305-1418 Sentence denotes In addition, CWPS failed to modulate cell signaling pathways dependent of TLR2 and TLR4 in transfected HEK-cells.
TextSentencer_T10 1419-1584 Sentence denotes Finally, in T84 cells, CWPS neither influenced intestinal barrier integrity under basal conditions nor prevented TNF-α/IFN-γ cytokine-mediated epithelium impairment.
T1 0-135 Sentence denotes Structure and biological activities of a hexosamine-rich cell wall polysaccharide isolated from the probiotic Lactobacillus farciminis.
T2 136-231 Sentence denotes Lactobacillus farciminis CIP 103136 is a bacterial strain with recognized probiotic properties.
T3 232-319 Sentence denotes However, the mechanisms underlying such properties have only been partially elucidated.
T4 320-449 Sentence denotes In this study, we isolated and purified a cell-wall associated polysaccharide (CWPS), and evaluated its biological role in vitro.
T5 450-747 Sentence denotes The structure of CWPS and responses from stimulation of (i) human macrophage-like THP-1 cells, (ii) human embryonal kidney (HEK293) cells stably transfected with Toll-like receptors (TLR2 or TLR4) and (iii) human colonocyte-like T84 intestinal epithelial cells, upon exposure to CWPS were studied.
T6 748-957 Sentence denotes The structure of the purified CWPS from L. farciminis CIP 103136 was analyzed by nuclear magnetic resonance (NMR), MALDI-TOF-TOF MS, and methylation analyses in its native form and following Smith degradation.
T7 958-1185 Sentence denotes It was shown to be a novel branched polysaccharide, composed of linear backbone of trisaccharide repeating units of: [→6αGlcpNAc1 → 4βManpNAc1 → 4βGlcpNAc1→] highly substituted with single residues of αGlcp, αGalp and αGlcpNAc.
T8 1186-1304 Sentence denotes Subsequently, the lack of pro- or anti-inflammatory properties of CWPS was established on macrophage-like THP-1 cells.
T9 1305-1418 Sentence denotes In addition, CWPS failed to modulate cell signaling pathways dependent of TLR2 and TLR4 in transfected HEK-cells.
T10 1419-1584 Sentence denotes Finally, in T84 cells, CWPS neither influenced intestinal barrier integrity under basal conditions nor prevented TNF-α/IFN-γ cytokine-mediated epithelium impairment.

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 161-164 Disease denotes CIP http://purl.obolibrary.org/obo/MONDO_0009459|http://purl.obolibrary.org/obo/MONDO_0015364
T3 802-805 Disease denotes CIP http://purl.obolibrary.org/obo/MONDO_0009459|http://purl.obolibrary.org/obo/MONDO_0015364

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 566-572 Body_part denotes kidney http://purl.obolibrary.org/obo/MAT_0000119
T2 683-693 Body_part denotes intestinal http://purl.obolibrary.org/obo/MAT_0000043
T3 1466-1476 Body_part denotes intestinal http://purl.obolibrary.org/obo/MAT_0000043

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 110-134 OrganismTaxon denotes Lactobacillus farciminis 1612
T2 136-160 OrganismTaxon denotes Lactobacillus farciminis 1612
T3 510-515 OrganismTaxon denotes human 9606
T4 550-555 OrganismTaxon denotes human 9606
T5 657-662 OrganismTaxon denotes human 9606

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 62-66 Body_part denotes wall http://purl.obolibrary.org/obo/UBERON_0000060
T2 367-371 Body_part denotes wall http://purl.obolibrary.org/obo/UBERON_0000060
T3 516-526 Body_part denotes macrophage http://purl.obolibrary.org/obo/CL_0000235
T4 556-572 Body_part denotes embryonal kidney http://purl.obolibrary.org/obo/UBERON_0002120
T5 683-710 Body_part denotes intestinal epithelial cells http://purl.obolibrary.org/obo/CL_0002563
T6 1029-1037 Body_part denotes backbone http://purl.obolibrary.org/obo/UBERON_0001130
T7 1276-1286 Body_part denotes macrophage http://purl.obolibrary.org/obo/CL_0000235
T8 1562-1572 Body_part denotes epithelium http://purl.obolibrary.org/obo/UBERON_0000483

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 399-403 Phenotype denotes CWPS HP:0500028
T2 467-471 Phenotype denotes CWPS HP:0500028
T3 729-733 Phenotype denotes CWPS HP:0500028
T4 778-782 Phenotype denotes CWPS HP:0500028
T5 1252-1256 Phenotype denotes CWPS HP:0500028
T6 1318-1322 Phenotype denotes CWPS HP:0500028
T7 1442-1446 Phenotype denotes CWPS HP:0500028

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 516-526 Cell denotes macrophage http://purl.obolibrary.org/obo/CL:0000235|http://purl.obolibrary.org/obo/CL:0000394
T3 663-673 Cell denotes colonocyte http://purl.obolibrary.org/obo/CL:1000347
T4 683-710 Cell denotes intestinal epithelial cells http://purl.obolibrary.org/obo/CL:0002563
T5 1276-1286 Cell denotes macrophage http://purl.obolibrary.org/obo/CL:0000235|http://purl.obolibrary.org/obo/CL:0000394
T7 1501-1506 Cell denotes basal http://purl.obolibrary.org/obo/CL:0002324