> top > docs > PubMed:30006512 > annotations

PubMed:30006512 JSONTXT

Annnotations TAB JSON ListView MergeView

ngly1-sample5

Id Subject Object Predicate Lexical cue
T1 433-452 chem:24139 denotes N-acetylglucosamine
T2 1177-1196 chem:24139 denotes N-acetylglucosamine
T3 1437-1443 chem:24139 denotes GlcNAc

NGLY1-deficiency

Id Subject Object Predicate Lexical cue
PD-NGLY1-deficiency-B_T1 433-452 chem:24139 denotes N-acetylglucosamine
PD-NGLY1-deficiency-B_T2 765-785 chem:24139 denotes N-acetyl glucosamine
PD-NGLY1-deficiency-B_T3 1177-1196 chem:24139 denotes N-acetylglucosamine
PD-NGLY1-deficiency-B_T4 1437-1443 chem:24139 denotes GlcNAc
T1 433-452 chem:24139 denotes N-acetylglucosamine
T2 765-785 chem:24139 denotes N-acetyl glucosamine
T3 1177-1196 chem:24139 denotes N-acetylglucosamine
T4 1437-1443 chem:24139 denotes GlcNAc

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 99-102 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043
T2 636-639 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043
T3 1283-1286 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 1415-1422 Glycan denotes lactose https://api.glycosmos.org/wurcs2image/latest/png/binary/G15541SE
T2 1525-1532 Glycan denotes lactose https://api.glycosmos.org/wurcs2image/latest/png/binary/G15541SE

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 99-102 Body_part denotes gut http://purl.obolibrary.org/obo/UBERON_0001007|http://purl.obolibrary.org/obo/UBERON_0001555|http://purl.obolibrary.org/obo/UBERON_0004907
T4 160-164 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T5 263-285 Body_part denotes gastrointestinal tract http://purl.obolibrary.org/obo/UBERON_0005409
T6 510-514 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T7 636-639 Body_part denotes gut http://purl.obolibrary.org/obo/UBERON_0001007|http://purl.obolibrary.org/obo/UBERON_0001555|http://purl.obolibrary.org/obo/UBERON_0004907
T10 1283-1286 Body_part denotes gut http://purl.obolibrary.org/obo/UBERON_0001007|http://purl.obolibrary.org/obo/UBERON_0001555|http://purl.obolibrary.org/obo/UBERON_0004907

GlyCosmos15-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 99-102 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043
T2 636-639 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043
T3 1283-1286 Body_part denotes gut http://purl.obolibrary.org/obo/MAT_0000043

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-103 Sentence denotes Carbohydrate Syntrophy enhances the establishment of Bifidobacterium breve UCC2003 in the neonatal gut.
T2 104-304 Sentence denotes The non-digestible oligosaccharide fraction of maternal milk represents an important of carbohydrate and energy source for saccharolytic bifidobacteria in the gastrointestinal tract during early life.
T3 305-515 Sentence denotes However, not all neonatal bifidobacteria isolates can directly metabolise the complex sialylated, fucosylated, sulphated and/or N-acetylglucosamine-containing oligosaccharide structures present in mothers milk.
T4 516-640 Sentence denotes For some bifidobacterial strains, efficient carbohydrate syntrophy or crossfeeding is key to their establishment in the gut.
T5 641-863 Sentence denotes In this study, we have adopted advanced functional genomic approaches to create single and double in-frame deletions of the N-acetyl glucosamine 6-phosphate deacetylase encoding genes, nagA1 and nagA2, of B. breve UCC2003.
T6 864-1287 Sentence denotes In vitro phenotypic analysis followed by in vivo studies on co-colonisation, mother to infant transmission, and evaluation of the relative co-establishment of B. bifidum and B. breve UCC2003 or UCC2003ΔnagA1ΔnagA2 in dam-reared neonatal mice demonstrates the importance of crossfeeding on sialic acid, fucose and N-acetylglucosamine-containing oligosaccharides for the establishment of B. breve UCC2003 in the neonatal gut.
T7 1288-1561 Sentence denotes Furthermore, transcriptomic analysis of in vivo gene expression shows upregulation of genes associated with the utilisation of lactose, sialic acid, GlcNAc-6-S and fucose in B. breve UCC2003, while for UCC2003ΔnagA1ΔnagA2 only genes for lactose metabolism were upregulated.

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 53-74 OrganismTaxon denotes Bifidobacterium breve 1685
T2 1101-1105 OrganismTaxon denotes mice 10088

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 1415-1422 Glycan denotes lactose https://api.glycosmos.org/wurcs2image/latest/png/binary/G15541SE
T2 1525-1532 Glycan denotes lactose https://api.glycosmos.org/wurcs2image/latest/png/binary/G15541SE

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 53-74 OrganismTaxon denotes Bifidobacterium breve 1685
T2 1101-1105 OrganismTaxon denotes mice 10088

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 99-102 Body_part denotes gut http://purl.obolibrary.org/obo/UBERON_0001007|http://purl.obolibrary.org/obo/UBERON_0001555|http://purl.obolibrary.org/obo/UBERON_0004907
T4 160-164 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T5 263-285 Body_part denotes gastrointestinal tract http://purl.obolibrary.org/obo/UBERON_0005409
T6 510-514 Body_part denotes milk http://purl.obolibrary.org/obo/UBERON_0001913
T7 636-639 Body_part denotes gut http://purl.obolibrary.org/obo/UBERON_0001007|http://purl.obolibrary.org/obo/UBERON_0001555|http://purl.obolibrary.org/obo/UBERON_0004907
T10 1283-1286 Body_part denotes gut http://purl.obolibrary.org/obo/UBERON_0001007|http://purl.obolibrary.org/obo/UBERON_0001555|http://purl.obolibrary.org/obo/UBERON_0004907