PubMed:29875604
Annnotations
pqqtest_sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 208-222 | xzyao:4696 | denotes | rice cultivars |
| M_1 | 27-42 | xzyao:30455 | denotes | rice grain size |
| M_2 | 650-665 | TO:0000137 | denotes | days to heading |
| M_3 | 623-639 | TO:0000269 | denotes | 100-grain weight |
| M_4 | 1131-1140 | funRiceGene:504 | denotes | flowering |
| M_5 | 1215-1224 | funRiceGene:504 | denotes | flowering |
| M_6 | 563-575 | TO:0000734, funRiceGene:132, xzyao:17604 | denotes | Grain length |
| M_7 | 232-245 | xzyao:41796 | denotes | genetic basis |
| M_8 | 32-37 | funRiceGene:91 | denotes | grain |
| M_9 | 172-177 | funRiceGene:91 | denotes | Grain |
| M_10 | 316-321 | funRiceGene:91 | denotes | grain |
| M_11 | 563-568 | funRiceGene:91 | denotes | Grain |
| M_12 | 582-587 | funRiceGene:91 | denotes | grain |
| M_13 | 601-606 | funRiceGene:91 | denotes | grain |
| M_14 | 627-632 | funRiceGene:91 | denotes | grain |
| M_15 | 745-750 | funRiceGene:91 | denotes | grain |
| M_16 | 1000-1005 | funRiceGene:91 | denotes | grain |
| M_17 | 1327-1332 | funRiceGene:91 | denotes | grain |
| M_18 | 27-37 | xzyao:26806 | denotes | rice grain |
| M_19 | 32-42 | TO:0000397, funRiceGene:32, xzyao:29368 | denotes | grain size |
| M_20 | 172-182 | TO:0000397, funRiceGene:32, xzyao:29368 | denotes | Grain size |
| M_21 | 316-326 | TO:0000397, funRiceGene:32, xzyao:29368 | denotes | grain size |
| M_22 | 745-755 | TO:0000397, funRiceGene:32, xzyao:29368 | denotes | grain size |
| M_23 | 1000-1010 | TO:0000397, funRiceGene:32, xzyao:29368 | denotes | grain size |
| M_24 | 1327-1337 | TO:0000397, funRiceGene:32, xzyao:29368 | denotes | grain size |
| M_25 | 1015-1027 | funRiceGene:38, xzyao:27536 | denotes | heading date |
| M_26 | 137-155 | PECO:0007351, xzyao:5301 | denotes | genetic background |
| M_27 | 476-494 | PECO:0007351, xzyao:5301 | denotes | genetic background |
| M_28 | 601-616 | TO:0000399, xzyao:24752 | denotes | grain thickness |
| M_29 | 255-260 | WTO:0000006 | denotes | trait |
| M_30 | 994-1005 | xzyao:29867 | denotes | large grain |
| M_31 | 582-593 | TO:0000975, funRiceGene:181, xzyao:38915 | denotes | grain width |
| M_32 | 1345-1367 | xzyao:23517 | denotes | Yamadanishiki cultivar |
| M_33 | 627-639 | TO:0000919, funRiceGene:451, xzyao:9073 | denotes | grain weight |
| M_34 | 1453-1461 | funRiceGene:189 | denotes | breeding |
| M_35 | 64-102 | hunflair:NA:CellLine | denotes | chromosomal segment substitution lines |
| M_36 | 339-377 | hunflair:NA:CellLine | denotes | chromosomal segment substitution lines |
| M_37 | 829-834 | hunflair:NA:Gene | denotes | qDTH3 |
| M_38 | 902-906 | hunflair:NA:CellLine | denotes | RILs |
| M_39 | 1141-1145 | hunflair:NA:CellLine | denotes | RILs |
| M_40 | 1225-1229 | hunflair:NA:CellLine | denotes | RILs |
| M_41 | 819-827 | hunflair:NA:CellLine | denotes | qGWt10-2 |
| M_42 | 1095-1103 | hunflair:NA:CellLine | denotes | qGWt10-2 |
| M_43 | 27-31 | hunflair:NA:Species | denotes | rice |
| M_44 | 208-212 | hunflair:NA:Species | denotes | rice |
| M_45 | 463-467 | hunflair:NA:Species | denotes | rice |
| M_46 | 1490-1494 | hunflair:NA:Species | denotes | rice |
| M_47 | 667-670 | pubtator:MESH:C434650:Chemical | denotes | DTH |
| M_48 | 760-763 | pubtator:MESH:C434650:Chemical | denotes | DTH |
| M_49 | 27-31 | pubtator:4530:Species | denotes | rice |
| M_50 | 208-212 | pubtator:4530:Species | denotes | rice |
| M_51 | 463-467 | pubtator:4530:Species | denotes | rice |
| M_52 | 1490-1494 | pubtator:4530:Species | denotes | rice |
21k_plant_trait_mention
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 255-260 | WTO:0000006 | denotes | trait |
| M_1 | 1453-1461 | funRiceGene:189 | denotes | breeding |
| M_2 | 601-616 | TO:0000399, xzyao:15940 | denotes | grain thickness |
| M_3 | 476-494 | PECO:0007351, xzyao:15886 | denotes | genetic background |
| M_4 | 582-593 | TO:0000975, funRiceGene:181, xzyao:9879 | denotes | grain width |
| M_5 | 172-177 | funRiceGene:91 | denotes | Grain |
| M_6 | 316-321 | funRiceGene:91 | denotes | grain |
| M_7 | 563-568 | funRiceGene:91 | denotes | Grain |
| M_8 | 582-587 | funRiceGene:91 | denotes | grain |
| M_9 | 601-606 | funRiceGene:91 | denotes | grain |
| M_10 | 745-750 | funRiceGene:91 | denotes | grain |
| M_11 | 1000-1005 | funRiceGene:91 | denotes | grain |
| M_12 | 1327-1332 | funRiceGene:91 | denotes | grain |
| M_13 | 172-182 | TO:0000397, funRiceGene:32, xzyao:369 | denotes | Grain size |
| M_14 | 316-326 | TO:0000397, funRiceGene:32, xzyao:369 | denotes | grain size |
| M_15 | 745-755 | TO:0000397, funRiceGene:32, xzyao:369 | denotes | grain size |
| M_16 | 1000-1010 | TO:0000397, funRiceGene:32, xzyao:369 | denotes | grain size |
| M_17 | 1327-1337 | TO:0000397, funRiceGene:32, xzyao:369 | denotes | grain size |
| M_18 | 623-639 | TO:0000269 | denotes | 100-grain weight |
| M_19 | 563-575 | TO:0000734, funRiceGene:132, xzyao:10333 | denotes | Grain length |
| M_20 | 994-1010 | xzyao:12006 | denotes | large grain size |
| M_21 | 1015-1027 | funRiceGene:38, xzyao:4335 | denotes | heading date |
| M_22 | 650-665 | TO:0000137, xzyao:17126 | denotes | days to heading |
| M_23 | 902-906 | hunflair:NA:CellLine | denotes | RILs |
| M_24 | 1141-1145 | hunflair:NA:CellLine | denotes | RILs |
| M_25 | 1225-1229 | hunflair:NA:CellLine | denotes | RILs |
| M_26 | 27-31 | hunflair:NA:Species | denotes | rice |
| M_27 | 208-212 | hunflair:NA:Species | denotes | rice |
| M_28 | 463-467 | hunflair:NA:Species | denotes | rice |
| M_29 | 1490-1494 | hunflair:NA:Species | denotes | rice |
| M_30 | 819-827 | hunflair:NA:CellLine | denotes | qGWt10-2 |
| M_31 | 1095-1103 | hunflair:NA:CellLine | denotes | qGWt10-2 |
| M_32 | 829-834 | hunflair:NA:Gene | denotes | qDTH3 |
| M_33 | 64-102 | hunflair:NA:CellLine | denotes | chromosomal segment substitution lines |
| M_34 | 339-377 | hunflair:NA:CellLine | denotes | chromosomal segment substitution lines |
| M_35 | 667-670 | pubtator:MESH:C434650:Chemical | denotes | DTH |
| M_36 | 760-763 | pubtator:MESH:C434650:Chemical | denotes | DTH |
| M_37 | 27-31 | pubtator:4530:Species | denotes | rice |
| M_38 | 208-212 | pubtator:4530:Species | denotes | rice |
| M_39 | 463-467 | pubtator:4530:Species | denotes | rice |
| M_40 | 1490-1494 | pubtator:4530:Species | denotes | rice |
OryzaGP_2022
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1015-1027 | http://identifiers.org/oryzabase.gene/6355 | denotes | heading date |
| T2 | 1210-1224 | http://identifiers.org/oryzabase.gene/14339 | denotes | late-flowering |
OryzaGP_2021_v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 618-620 | http://identifiers.org/oryzabase.gene/146 | denotes | GT |
OryzaGP_2021_FLAIR
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 902-906 | hunflair:NA:CellLine | denotes | RILs |
| M_1 | 1141-1145 | hunflair:NA:CellLine | denotes | RILs |
| M_2 | 1225-1229 | hunflair:NA:CellLine | denotes | RILs |
| M_3 | 27-31 | hunflair:NA:Species | denotes | rice |
| M_4 | 208-212 | hunflair:NA:Species | denotes | rice |
| M_5 | 463-467 | hunflair:NA:Species | denotes | rice |
| M_6 | 1490-1494 | hunflair:NA:Species | denotes | rice |
| M_7 | 829-834 | hunflair:NA:Gene | denotes | qDTH3 |
| M_8 | 819-827 | hunflair:NA:CellLine | denotes | qGWt10-2 |
| M_9 | 1095-1103 | hunflair:NA:CellLine | denotes | qGWt10-2 |
| M_10 | 64-102 | hunflair:NA:CellLine | denotes | chromosomal segment substitution lines |
| M_11 | 339-377 | hunflair:NA:CellLine | denotes | chromosomal segment substitution lines |
OryzaGP_2021
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 32-42 | http://identifiers.org/oryzabase.gene/2135 | denotes | grain size |
| T2 | 316-326 | http://identifiers.org/oryzabase.gene/2135 | denotes | grain size |
| T3 | 618-620 | http://identifiers.org/oryzabase.gene/146 | denotes | GT |
| T4 | 745-755 | http://identifiers.org/oryzabase.gene/2135 | denotes | grain size |
| T5 | 1000-1010 | http://identifiers.org/oryzabase.gene/2135 | denotes | grain size |
| T6 | 1015-1027 | http://identifiers.org/oryzabase.gene/760 | denotes | heading date |
| T7 | 1015-1027 | http://identifiers.org/oryzabase.gene/6355 | denotes | heading date |
| T8 | 1210-1224 | http://identifiers.org/oryzabase.gene/14339 | denotes | late-flowering |
| T9 | 1327-1337 | http://identifiers.org/oryzabase.gene/2135 | denotes | grain size |
| T71141 | 1015-1027 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | heading date |
| T98202 | 1210-1224 | http://identifiers.org/ricegap/LOC_Os05g46370 | denotes | late-flowering |
| T91609 | 32-42 | http://identifiers.org/rapdb.locus/Os03g0407400 | denotes | grain size |
| T13648 | 172-182 | http://identifiers.org/rapdb.locus/Os03g0407400 | denotes | Grain size |
| T16421 | 316-326 | http://identifiers.org/rapdb.locus/Os03g0407400 | denotes | grain size |
| T50177 | 745-755 | http://identifiers.org/rapdb.locus/Os03g0407400 | denotes | grain size |
| T67022 | 1000-1010 | http://identifiers.org/rapdb.locus/Os03g0407400 | denotes | grain size |
| T91950 | 1015-1027 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | heading date |
| T98838 | 1210-1224 | http://identifiers.org/rapdb.locus/Os05g0541400 | denotes | late-flowering |
| T55194 | 1327-1337 | http://identifiers.org/rapdb.locus/Os03g0407400 | denotes | grain size |
| T79285 | 32-42 | http://identifiers.org/uniprot/C6L686 | denotes | grain size |
| T88882 | 316-326 | http://identifiers.org/uniprot/C6L686 | denotes | grain size |
| T27853 | 745-755 | http://identifiers.org/uniprot/C6L686 | denotes | grain size |
| T66905 | 1000-1010 | http://identifiers.org/uniprot/C6L686 | denotes | grain size |
| T47334 | 1210-1224 | http://identifiers.org/uniprot/A0A0P0WQ90 | denotes | late-flowering |
| T23495 | 1327-1337 | http://identifiers.org/uniprot/C6L686 | denotes | grain size |
| M_0 | 902-906 | hunflair:NA:CellLine | denotes | RILs |
| M_1 | 1141-1145 | hunflair:NA:CellLine | denotes | RILs |
| M_2 | 1225-1229 | hunflair:NA:CellLine | denotes | RILs |
| M_3 | 27-31 | hunflair:NA:Species | denotes | rice |
| M_4 | 208-212 | hunflair:NA:Species | denotes | rice |
| M_5 | 463-467 | hunflair:NA:Species | denotes | rice |
| M_6 | 1490-1494 | hunflair:NA:Species | denotes | rice |
| M_7 | 829-834 | hunflair:NA:Gene | denotes | qDTH3 |
| M_8 | 819-827 | hunflair:NA:CellLine | denotes | qGWt10-2 |
| M_9 | 1095-1103 | hunflair:NA:CellLine | denotes | qGWt10-2 |
| M_10 | 64-102 | hunflair:NA:CellLine | denotes | chromosomal segment substitution lines |
| M_11 | 339-377 | hunflair:NA:CellLine | denotes | chromosomal segment substitution lines |
funRiceGenes-all
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PTO-all_T1 | 32-42 | http://purl.obolibrary.org/obo/TO_0000397 | denotes | grain size |
| PTO-all_T2 | 172-182 | http://purl.obolibrary.org/obo/TO_0000397 | denotes | Grain size |
| PTO-all_T3 | 316-326 | http://purl.obolibrary.org/obo/TO_0000397 | denotes | grain size |
| PTO-all_T4 | 563-575 | http://purl.obolibrary.org/obo/TO_0000734 | denotes | Grain length |
| PTO-all_T5 | 582-593 | http://purl.obolibrary.org/obo/TO_0000975 | denotes | grain width |
| PTO-all_T6 | 601-616 | http://purl.obolibrary.org/obo/TO_0000399 | denotes | grain thickness |
| PTO-all_T7 | 623-639 | http://purl.obolibrary.org/obo/TO_0000269 | denotes | 100-grain weight |
| PTO-all_T8 | 627-639 | http://purl.obolibrary.org/obo/TO_0000919 | denotes | grain weight |
| PTO-all_T9 | 650-665 | http://purl.obolibrary.org/obo/TO_0000137 | denotes | days to heading |
| PTO-all_T10 | 745-755 | http://purl.obolibrary.org/obo/TO_0000397 | denotes | grain size |
| PTO-all_T11 | 1000-1010 | http://purl.obolibrary.org/obo/TO_0000397 | denotes | grain size |
| PTO-all_T12 | 1015-1027 | http://purl.obolibrary.org/obo/TO_0000137 | denotes | heading date |
| PTO-all_T13 | 1327-1337 | http://purl.obolibrary.org/obo/TO_0000397 | denotes | grain size |
funRiceGenes-exact
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PTO-exact_T1 | 32-42 | http://purl.obolibrary.org/obo/TO_0000397 | denotes | grain size |
| PTO-exact_T2 | 172-182 | http://purl.obolibrary.org/obo/TO_0000397 | denotes | Grain size |
| PTO-exact_T3 | 316-326 | http://purl.obolibrary.org/obo/TO_0000397 | denotes | grain size |
| PTO-exact_T4 | 563-575 | http://purl.obolibrary.org/obo/TO_0000734 | denotes | Grain length |
| PTO-exact_T5 | 582-593 | http://purl.obolibrary.org/obo/TO_0000975 | denotes | grain width |
| PTO-exact_T6 | 601-616 | http://purl.obolibrary.org/obo/TO_0000399 | denotes | grain thickness |
| PTO-exact_T7 | 623-639 | http://purl.obolibrary.org/obo/TO_0000269 | denotes | 100-grain weight |
| PTO-exact_T8 | 627-639 | http://purl.obolibrary.org/obo/TO_0000919 | denotes | grain weight |
| PTO-exact_T9 | 650-665 | http://purl.obolibrary.org/obo/TO_0000137 | denotes | days to heading |
| PTO-exact_T10 | 745-755 | http://purl.obolibrary.org/obo/TO_0000397 | denotes | grain size |
| PTO-exact_T11 | 1000-1010 | http://purl.obolibrary.org/obo/TO_0000397 | denotes | grain size |
| PTO-exact_T12 | 1327-1337 | http://purl.obolibrary.org/obo/TO_0000397 | denotes | grain size |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-171 | Sentence | denotes | Identification of QTLs for rice grain size using a novel set of chromosomal segment substitution lines derived from Yamadanishiki in the genetic background of Koshihikari. |
| T2 | 172-278 | Sentence | denotes | Grain size is important for brewing-rice cultivars, but the genetic basis for this trait is still unclear. |
| T3 | 279-530 | Sentence | denotes | This paper aims to identify QTLs for grain size using novel chromosomal segment substitution lines (CSSLs) harboring chromosomal segments from Yamadanishiki, an excellent sake-brewing rice, in the genetic background of Koshihikari, a cooking cultivar. |
| T4 | 531-562 | Sentence | denotes | We developed a set of 49 CSSLs. |
| T5 | 563-726 | Sentence | denotes | Grain length (GL), grain width (GWh), grain thickness (GT), 100-grain weight (GWt) and days to heading (DTH) were evaluated, and a CSSL-QTL analysis was conducted. |
| T6 | 727-780 | Sentence | denotes | Eighteen QTLs for grain size and DTH were identified. |
| T7 | 781-1302 | Sentence | denotes | Seven (qGL11, qGWh5, qGWh10, qGWt6-2, qGWt10-2, qDTH3, and qDTH6) that were detected in F2 and recombinant inbred lines (RILs) from Koshihikari/Yamadanishiki were validated, suggesting that they are important for large grain size and heading date in Yamadanishiki. Additionally, QTL reanalysis for GWt showed that qGWt10-2 was only detected in early-flowering RILs, while qGWt5 (in the same region as qGWh5) was only detected in late-flowering RILs, suggesting that these QTLs show different responses to the environment. |
| T8 | 1303-1413 | Sentence | denotes | Our study revealed that grain size in the Yamadanishiki cultivar is determined by a complex genetic mechanism. |
| T9 | 1414-1495 | Sentence | denotes | These findings could be useful for the breeding of both cooking and brewing rice. |