> top > docs > PubMed:29587633 > annotations

PubMed:29587633 JSONTXT

Annnotations TAB JSON ListView MergeView

GoldHamster

Id Subject Object Predicate Lexical cue
T1 13-33 GO:0000262 denotes mitochondrial genome
T2 27-33 SO:0001026 denotes genome
T3 67-73 D049872 denotes mussel
T6 74-89 47528 denotes Anodonta cygnea
T7 91-99 D049872 denotes Bivalvia
T8 101-110 D049876 denotes Unionidae
T9 135-147 UBERON:0014402 denotes sex-specific
T11 229-246 D004272 denotes mitochondrial DNA
T12 229-246 SO:0001032 denotes mitochondrial DNA
T10 229-246 GO:0000262 denotes mitochondrial DNA
T17 250-258 D049872 denotes bivalves
T18 464-481 GO:0007530 denotes sex determination
T19 522-529 D049872 denotes mussels
T20 577-597 GO:0000262 denotes mitochondrial genome
T21 591-597 SO:0001026 denotes genome
T22 620-624 PR:000013784 denotes swan
T23 620-624 Q9NTZ6 denotes swan
T24 620-624 Q8SQ27 denotes swan
T25 620-624 Q8R4X3 denotes swan
T26 625-631 D049872 denotes mussel
T29 633-648 47528 denotes Anodonta cygnea
T30 692-712 GO:0000262 denotes mitochondrial genome
T31 706-712 SO:0001026 denotes genome
T32 731-735 D004372 denotes duck
T33 731-735 8839 denotes duck
T34 736-742 D049872 denotes mussel
T37 744-760 143294 denotes Anodonta anatina
T38 795-803 CHEBI:36080 denotes proteins
T39 828-835 D049872 denotes bivalve
T40 946-959 SO:0001077 denotes transmembrane
T41 946-959 GO:0044214 denotes transmembrane
T42 946-959 GO:0016021 denotes transmembrane
T43 969-972 CHEBI:85361 denotes TMs
T44 975-981 SO:0000725 denotes signal
T45 975-981 SO:0000418 denotes signal
T46 975-990 D021382 denotes signal peptides
T55 992-995 1799649 denotes SPs
T50 992-995 PR:P49903 denotes SPs
T54 992-995 PR:000014643 denotes SPs
T57 992-995 PR:Q8S948 denotes SPs
T53 992-995 D016750 denotes SPs
T56 992-995 C535540 denotes SPs
T52 992-995 GO:0046524 denotes SPs
T51 992-995 CVCL_R927 denotes SPs
T58 998-1004 SO:0000725 denotes signal
T59 998-1004 SO:0000418 denotes signal
T60 1021-1024 O81191 denotes SCS
T61 1021-1024 D000168 denotes SCS
T62 1021-1024 GO:0004776 denotes SCS
T63 1039-1051 GO:0051179 denotes localization
T64 1103-1106 CHEBI:85361 denotes TMs
T65 1143-1149 D049872 denotes mussel
T71 1213-1216 1799649 denotes SPs
T67 1213-1216 CVCL_R927 denotes SPs
T66 1213-1216 PR:P49903 denotes SPs
T70 1213-1216 PR:000014643 denotes SPs
T73 1213-1216 PR:Q8S948 denotes SPs
T68 1213-1216 GO:0046524 denotes SPs
T69 1213-1216 D016750 denotes SPs
T72 1213-1216 C535540 denotes SPs
T74 1415-1423 CHEBI:36080 denotes proteins
T75 1461-1464 CHEBI:85361 denotes TMs
T77 1620-1637 D004272 denotes mitochondrial DNA
T78 1620-1637 SO:0001032 denotes mitochondrial DNA
T76 1620-1637 GO:0000262 denotes mitochondrial DNA
T83 1668-1674 37565 denotes tandem
T84 1668-1674 SO:0001513 denotes tandem
T86 1729-1734 D004272 denotes mtDNA
T87 1729-1734 SO:0001032 denotes mtDNA
T85 1729-1734 GO:0000262 denotes mtDNA
T88 1888-1895 D049872 denotes mussels
T89 1955-1968 GO:0005622 denotes intracellular
T90 2048-2065 GO:0007530 denotes sex determination
T91 2080-2086 D049872 denotes mussel

PubMed_Structured_Abstracts

Id Subject Object Predicate Lexical cue
T1 189-1159 BACKGROUND denotes Doubly uniparental inheritance (DUI) of mitochondrial DNA in bivalves is a fascinating exception to strictly maternal inheritance as practiced by all other animals. Recent work on DUI suggests that there may be unique regions of the mitochondrial genomes that play a role in sex determination and/or sexual development in freshwater mussels (order Unionoida). In this study, one complete mitochondrial genome of the hermaphroditic swan mussel, Anodonta cygnea, is sequenced and compared to the complete mitochondrial genome of the gonochoric duck mussel, Anodonta anatina. An in silico assessment of novel proteins found within freshwater bivalve species (known as F-, H-, and M-open reading frames or ORFs) is conducted, with special attention to putative transmembrane domains (TMs), signal peptides (SPs), signal cleavage sites (SCS), subcellular localization, and potential control regions. Characteristics of TMs are also examined across freshwater mussel lineages.
T2 1169-1735 RESULTS denotes In silico analyses suggests the presence of SPs and SCSs and provides some insight into possible function(s) of these novel ORFs. The assessed confidence in these structures and functions was highly variable, possibly due to the novelty of these proteins. The number and topology of putative TMs appear to be maintained among both F- and H-ORFs, however, this is not the case for M-ORFs. There does not appear to be a typical control region in H-type mitochondrial DNA, especially given the loss of tandem repeats in unassigned regions when compared to F-type mtDNA.
T3 1748-2087 CONCLUSION denotes In silico analyses provides a useful tool to discover patterns in DUI and to navigate further in situ analyses related to DUI in freshwater mussels. In situ analysis will be necessary to further explore the intracellular localizations and possible role of these open reading frames in the process of sex determination in freshwater mussel.

Goldhamster2_Cellosaurus

Id Subject Object Predicate Lexical cue
T1 262-263 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T2 393-396 CVCL_E773|Transformed_cell_line|Homo sapiens denotes may
T3 454-455 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T4 564-567 CVCL_Z424|Spontaneously_immortalized_cell_line|Ostrinia nubilalis denotes one
T5 762-764 CVCL_8754|Cancer_cell_line|Homo sapiens denotes An
T6 762-764 CVCL_H241|Cancer_cell_line|Homo sapiens denotes An
T7 992-995 CVCL_4920|Spontaneously_immortalized_cell_line|Sus scrofa denotes SPs
T8 992-995 CVCL_R927|Spontaneously_immortalized_cell_line|Lateolabrax japonicus denotes SPs
T9 1213-1216 CVCL_4920|Spontaneously_immortalized_cell_line|Sus scrofa denotes SPs
T10 1213-1216 CVCL_R927|Spontaneously_immortalized_cell_line|Lateolabrax japonicus denotes SPs
T11 1585-1586 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T12 1776-1777 CVCL_6479|Finite_cell_line|Mus musculus denotes a