PubMed:29577566
Annnotations
pqqtest_sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T75844 | 69-85 | xzyao:18974 | denotes | starch synthesis |
| T54867 | 435-451 | xzyao:18974 | denotes | starch synthesis |
| T9848 | 1726-1742 | xzyao:18974 | denotes | starch synthesis |
| T5106 | 1840-1850 | xzyao:5258 | denotes | high yield |
| T91245 | 1699-1710 | WTO:0000011, funRiceGene:359 | denotes | development |
| T71236 | 35-41 | funRiceGene:512 | denotes | kinase |
| T48961 | 1022-1028 | funRiceGene:512 | denotes | kinase |
| T97779 | 1408-1432 | xzyao:26271 | denotes | reduced protein activity |
| T72060 | 1866-1873 | WTO:0000048, funRiceGene:27 | denotes | quality |
| T35701 | 35-41 | funRiceGene:139 | denotes | kinase |
| T92317 | 1022-1028 | funRiceGene:139 | denotes | kinase |
| T76897 | 1358-1376 | xzyao:5912 | denotes | strong PK activity |
| T40984 | 816-831 | xzyao:36210 | denotes | endosperm cells |
| T3079 | 1845-1850 | funRiceGene:377 | denotes | yield |
| T96906 | 958-975 | funRiceGene:79, xzyao:10375 | denotes | Map-based cloning |
| T90075 | 118-123 | funRiceGene:91 | denotes | grain |
| T90635 | 529-534 | funRiceGene:91 | denotes | grain |
| T93554 | 593-598 | funRiceGene:91 | denotes | grain |
| T38112 | 1776-1781 | funRiceGene:91 | denotes | grain |
| T36686 | 1860-1865 | funRiceGene:91 | denotes | grain |
| T16193 | 54-75 | xzyao:36028 | denotes | rice endosperm starch |
| T97341 | 483-493 | xzyao:26154 | denotes | novel rice |
| T61972 | 1860-1873 | funRiceGene:99, xzyao:16108 | denotes | grain quality |
| T9980 | 1855-1865 | xzyao:26806 | denotes | rice grain |
| T4409 | 1855-1873 | xzyao:25830 | denotes | rice grain quality |
| T80854 | 1694-1698 | PO:0009010, funRiceGene:180 | denotes | seed |
| T96515 | 118-131 | funRiceGene:499, xzyao:24953 | denotes | grain filling |
| T17401 | 529-542 | funRiceGene:499, xzyao:24953 | denotes | grain filling |
| T74899 | 1776-1789 | funRiceGene:499, xzyao:24953 | denotes | grain filling |
| T94667 | 1595-1614 | xzyao:18966 | denotes | metabolic disorders |
| T12381 | 494-514 | xzyao:5100 | denotes | white-core endosperm |
| T97331 | 650-683 | xzyao:17862 | denotes | starch physicochemical properties |
| T24407 | 1694-1710 | funRiceGene:317, xzyao:22606 | denotes | seed development |
| T73310 | 723-754 | xzyao:29435 | denotes | normal starch compound granules |
| T84980 | 1225-1237 | xzyao:26277 | denotes | Enzyme assay |
| T16788 | 236-255 | funRiceGene:102, xzyao:20491 | denotes | starch biosynthesis |
| T24320 | 1817-1836 | xzyao:38537 | denotes | genetic improvement |
| T28530 | 59-75 | xzyao:32001 | denotes | endosperm starch |
| T43459 | 617-631 | TO:0000696, xzyao:25563 | denotes | starch content |
| T33941 | 16-41 | xzyao:1445 | denotes | plastidic pyruvate kinase |
| T91799 | 857-873 | TO:0000430, xzyao:20769 | denotes | germination rate |
| T36673 | 147-156 | xzyao:25187 | denotes | main form |
| T28216 | 435-459 | xzyao:42005 | denotes | starch synthesis pathway |
| T1881 | 69-75 | funRiceGene:143 | denotes | starch |
| T14003 | 133-139 | funRiceGene:143 | denotes | Starch |
| T27965 | 236-242 | funRiceGene:143 | denotes | starch |
| T16784 | 435-441 | funRiceGene:143 | denotes | starch |
| M_47 | 617-623 | funRiceGene:143 | denotes | starch |
| M_48 | 650-656 | funRiceGene:143 | denotes | starch |
| M_49 | 730-736 | funRiceGene:143 | denotes | starch |
| M_50 | 1726-1732 | funRiceGene:143 | denotes | starch |
| M_51 | 573-605 | xzyao:42353 | denotes | significantly lower grain weight |
| M_52 | 593-605 | TO:0000919, funRiceGene:451, xzyao:9073 | denotes | grain weight |
| M_53 | 54-68 | xzyao:39115 | denotes | rice endosperm |
| M_54 | 59-68 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_55 | 365-374 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_56 | 505-514 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_57 | 816-825 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_58 | 365-384 | xzyao:17343 | denotes | endosperm formation |
| M_59 | 1498-1503 | hunflair:NA:Gene | denotes | PKpα2 |
| M_60 | 1034-1037 | hunflair:NA:Chemical | denotes | ATP |
| M_61 | 1515-1520 | hunflair:NA:Gene | denotes | PKpβ2 |
| M_62 | 1595-1614 | hunflair:NA:Disease | denotes | metabolic disorders |
| M_63 | 0-5 | hunflair:NA:Gene | denotes | OsPK2 |
| M_64 | 979-984 | hunflair:NA:Gene | denotes | OsPK2 |
| M_65 | 1138-1143 | hunflair:NA:Gene | denotes | OsPK2 |
| M_66 | 1285-1290 | hunflair:NA:Gene | denotes | OsPK2 |
| M_67 | 1434-1439 | hunflair:NA:Gene | denotes | OsPK2 |
| M_68 | 1679-1684 | hunflair:NA:Gene | denotes | OsPK2 |
| M_69 | 1072-1083 | hunflair:NA:Gene | denotes | EC 2.7.1.40 |
| M_70 | 1441-1446 | hunflair:NA:Gene | denotes | PKpα1 |
| M_71 | 26-34 | hunflair:NA:Chemical | denotes | pyruvate |
| M_72 | 1013-1021 | hunflair:NA:Chemical | denotes | pyruvate |
| M_73 | 1039-1047 | hunflair:NA:Chemical | denotes | pyruvate |
| M_74 | 1505-1510 | hunflair:NA:Gene | denotes | PKpβ1 |
| M_75 | 26-41 | hunflair:NA:Gene | denotes | pyruvate kinase |
| M_76 | 1013-1028 | hunflair:NA:Gene | denotes | pyruvate kinase |
| M_77 | 1030-1032 | hunflair:NA:Gene | denotes | PK |
| M_78 | 1365-1367 | hunflair:NA:Gene | denotes | PK |
| M_79 | 54-58 | hunflair:NA:Species | denotes | rice |
| M_80 | 388-392 | hunflair:NA:Species | denotes | rice |
| M_81 | 489-493 | hunflair:NA:Species | denotes | rice |
| M_82 | 1177-1181 | hunflair:NA:Species | denotes | rice |
| M_83 | 1473-1477 | hunflair:NA:Species | denotes | rice |
| M_84 | 1855-1859 | hunflair:NA:Species | denotes | rice |
| M_85 | 1211-1223 | hunflair:NA:Gene | denotes | chloroplasts |
| M_86 | 551-556 | hunflair:NA:Gene | denotes | ospk2 |
| M_87 | 835-840 | hunflair:NA:Gene | denotes | ospk2 |
| M_88 | 877-882 | hunflair:NA:Gene | denotes | ospk2 |
| M_89 | 26-34 | pubtator:MESH:D011773:Chemical | denotes | pyruvate |
| M_90 | 1013-1021 | pubtator:MESH:D011773:Chemical | denotes | pyruvate |
| M_91 | 1039-1047 | pubtator:MESH:D011773:Chemical | denotes | pyruvate |
| M_92 | 1039-1051 | pubtator:MESH:D011773:Chemical | denotes | pyruvate 2-O |
| M_93 | 1034-1037 | pubtator:MESH:D000255:Chemical | denotes | ATP |
| M_94 | 1595-1614 | pubtator:MESH:D008659:Disease | denotes | metabolic disorders |
| M_95 | 54-58 | pubtator:4530:Species | denotes | rice |
| M_96 | 388-392 | pubtator:4530:Species | denotes | rice |
| M_97 | 489-493 | pubtator:4530:Species | denotes | rice |
| M_98 | 1177-1181 | pubtator:4530:Species | denotes | rice |
| M_99 | 1473-1477 | pubtator:4530:Species | denotes | rice |
| M_100 | 1855-1859 | pubtator:4530:Species | denotes | rice |
| M_101 | 178-191 | pubtator:3193:Species | denotes | higher plants |
| M_0 | 723-754 | cand:TO:0000702-starch concentration | denotes | normal starch compound granules |
| M_1 | 723-754 | cand:TO:0002655-starch grain size | denotes | normal starch compound granules |
| M_2 | 723-754 | cand:WTO:0000354-starch viscosity | denotes | normal starch compound granules |
| M_3 | 723-754 | cand:TO:0020101-starch mobilization | denotes | normal starch compound granules |
| M_4 | 723-754 | cand:TO:0000097-amylopectin content | denotes | normal starch compound granules |
| M_5 | 723-754 | cand:TO:0000372-amylose to amylopectin ratio | denotes | normal starch compound granules |
| M_6 | 723-754 | cand:TO:0000522-stomatal conductance | denotes | normal starch compound granules |
| M_7 | 723-754 | cand:PECO:0007237-normal temperature regimen | denotes | normal starch compound granules |
| M_8 | 723-754 | cand:TO:0020076-phenolic compound content | denotes | normal starch compound granules |
| M_9 | 723-754 | cand:PPO:0001042-simple fruit or compound fruit | denotes | normal starch compound granules |
| M_10 | 723-754 | cand:WTO:0000149-grain starch content | denotes | normal starch compound granules |
| M_11 | 816-831 | cand:PO:0000038-primary endosperm cell | denotes | endosperm cells |
| M_12 | 816-831 | cand:PO:0000199-cellular endosperm | denotes | endosperm cells |
| M_13 | 816-831 | cand:PO:0001096-primary endosperm cell stage | denotes | endosperm cells |
| M_14 | 816-831 | cand:PO:0004010-meristematic cell | denotes | endosperm cells |
| M_15 | 816-831 | cand:PO:0006017-helobial endosperm | denotes | endosperm cells |
| M_16 | 816-831 | cand:PO:0001098-formation of starchy endosperm | denotes | endosperm cells |
| M_17 | 816-831 | cand:funRiceGene:416-exodermal cells | denotes | endosperm cells |
| M_18 | 816-831 | cand:TO:0000587-endosperm quality | denotes | endosperm cells |
| M_19 | 816-831 | cand:TO:0000231-endospermless | denotes | endosperm cells |
| M_20 | 816-831 | cand:TO:0000487-endosperm color | denotes | endosperm cells |
| M_21 | 816-831 | cand:PO:0000084-plant sperm cell | denotes | endosperm cells |
| M_22 | 1408-1432 | cand:TO:0000325-soluble protein content | denotes | reduced protein activity |
| M_23 | 1408-1432 | cand:TO:0000598-protein content | denotes | reduced protein activity |
| M_24 | 1408-1432 | cand:funRiceGene:129-protein kinase | denotes | reduced protein activity |
| M_25 | 1408-1432 | cand:TO:0000610-soluble to total protein ratio | denotes | reduced protein activity |
| M_26 | 1408-1432 | cand:funRiceGene:211-protein phosphatase | denotes | reduced protein activity |
| M_27 | 1408-1432 | cand:TO:0000324-rubisco to soluble protein ratio | denotes | reduced protein activity |
| M_28 | 1408-1432 | cand:TO:0000033-iodine sensitivity | denotes | reduced protein activity |
| M_29 | 1408-1432 | cand:funRiceGene:500-antimicrobial activity | denotes | reduced protein activity |
| M_30 | 1408-1432 | cand:TO:0000479-acid sensitivity | denotes | reduced protein activity |
| M_31 | 1408-1432 | cand:TO:0000158-red light sensitivity | denotes | reduced protein activity |
| M_32 | 1408-1432 | cand:TO:0000434-root activity | denotes | reduced protein activity |
| M_33 | 16-41 | cand:TO:0002654-pyruvate orthophosphate dikinase activity trait | denotes | plastidic pyruvate kinase |
| M_34 | 16-41 | cand:TO:0000319-rubisco content | denotes | plastidic pyruvate kinase |
| M_35 | 16-41 | cand:TO:0000312-NADH glutamate synthase content | denotes | plastidic pyruvate kinase |
| M_36 | 16-41 | cand:funRiceGene:129-protein kinase | denotes | plastidic pyruvate kinase |
| M_37 | 16-41 | cand:TO:0000314-phosphoglycerate mutase content | denotes | plastidic pyruvate kinase |
| M_38 | 16-41 | cand:TO:0005008-acetolactate synthase inhibitor sensitivity | denotes | plastidic pyruvate kinase |
| M_39 | 16-41 | cand:funRiceGene:241-blast disease | denotes | plastidic pyruvate kinase |
| M_40 | 16-41 | cand:funRiceGene:481-actin protein | denotes | plastidic pyruvate kinase |
| M_41 | 16-41 | cand:PO:0001097-plant zygote stage | denotes | plastidic pyruvate kinase |
| M_42 | 16-41 | cand:PO:0028001-plant life cycle phase | denotes | plastidic pyruvate kinase |
| M_43 | 835-840 | GeneID:NA | denotes | ospk2 |
| M_44 | 1287-1289 | GeneID:RAPID:Os06g0288100MSUID:LOC_Os06g18000 | denotes | PK |
| M_45 | 1365-1367 | GeneID:RAPID:Os06g0288100MSUID:LOC_Os06g18000 | denotes | PK |
| M_46 | 0-5 | GeneID:RAPID:Os02g0820900MSUID:LOC_Os02g57530 | denotes | OsPK2 |
21k_plant_trait_mention
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_12 | 1726-1732 | funRiceGene:143 | denotes | starch |
| M_0 | 529-542 | funRiceGene:499, xzyao:4774 | denotes | grain filling |
| M_1 | 617-631 | TO:0000696, xzyao:2819 | denotes | starch content |
| M_2 | 1022-1028 | funRiceGene:512 | denotes | kinase |
| M_3 | 1845-1850 | funRiceGene:377 | denotes | yield |
| M_4 | 958-975 | funRiceGene:79, xzyao:16212 | denotes | Map-based cloning |
| M_5 | 789-804 | xzyao:3204 | denotes | single granules |
| M_6 | 133-139 | funRiceGene:143 | denotes | Starch |
| M_7 | 236-242 | funRiceGene:143 | denotes | starch |
| M_8 | 435-441 | funRiceGene:143 | denotes | starch |
| M_9 | 617-623 | funRiceGene:143 | denotes | starch |
| M_10 | 650-656 | funRiceGene:143 | denotes | starch |
| M_11 | 730-736 | funRiceGene:143 | denotes | starch |
| M_13 | 1688-1698 | xzyao:6221 | denotes | plant seed |
| M_14 | 365-384 | xzyao:14375 | denotes | endosperm formation |
| M_15 | 529-534 | funRiceGene:91 | denotes | grain |
| M_16 | 593-598 | funRiceGene:91 | denotes | grain |
| M_17 | 1776-1781 | funRiceGene:91 | denotes | grain |
| M_18 | 1860-1865 | funRiceGene:91 | denotes | grain |
| M_19 | 365-374 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_20 | 505-514 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_21 | 816-825 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_22 | 1694-1698 | PO:0009010, funRiceGene:180 | denotes | seed |
| M_23 | 236-255 | funRiceGene:102, xzyao:10310 | denotes | starch biosynthesis |
| M_24 | 519-542 | xzyao:636 | denotes | defective grain filling |
| M_25 | 1022-1028 | funRiceGene:139 | denotes | kinase |
| M_26 | 857-873 | TO:0000430, xzyao:4381 | denotes | germination rate |
| M_27 | 26-34 | hunflair:NA:Chemical | denotes | pyruvate |
| M_28 | 1013-1021 | hunflair:NA:Chemical | denotes | pyruvate |
| M_29 | 1039-1047 | hunflair:NA:Chemical | denotes | pyruvate |
| M_30 | 1505-1510 | hunflair:NA:Gene | denotes | PKpβ1 |
| M_31 | 54-58 | hunflair:NA:Species | denotes | rice |
| M_32 | 388-392 | hunflair:NA:Species | denotes | rice |
| M_33 | 489-493 | hunflair:NA:Species | denotes | rice |
| M_34 | 1177-1181 | hunflair:NA:Species | denotes | rice |
| M_35 | 1473-1477 | hunflair:NA:Species | denotes | rice |
| M_36 | 1855-1859 | hunflair:NA:Species | denotes | rice |
| M_37 | 1030-1032 | hunflair:NA:Gene | denotes | PK |
| M_38 | 1365-1367 | hunflair:NA:Gene | denotes | PK |
| M_39 | 1498-1503 | hunflair:NA:Gene | denotes | PKpα2 |
| M_40 | 26-41 | hunflair:NA:Gene | denotes | pyruvate kinase |
| M_41 | 1013-1028 | hunflair:NA:Gene | denotes | pyruvate kinase |
| M_42 | 1211-1223 | hunflair:NA:Gene | denotes | chloroplasts |
| M_43 | 1034-1037 | hunflair:NA:Chemical | denotes | ATP |
| M_44 | 1072-1083 | hunflair:NA:Gene | denotes | EC 2.7.1.40 |
| M_45 | 551-556 | hunflair:NA:Gene | denotes | ospk2 |
| M_46 | 835-840 | hunflair:NA:Gene | denotes | ospk2 |
| M_47 | 877-882 | hunflair:NA:Gene | denotes | ospk2 |
| M_48 | 1595-1614 | hunflair:NA:Disease | denotes | metabolic disorders |
| M_49 | 1515-1520 | hunflair:NA:Gene | denotes | PKpβ2 |
| M_50 | 0-5 | hunflair:NA:Gene | denotes | OsPK2 |
| M_51 | 979-984 | hunflair:NA:Gene | denotes | OsPK2 |
| M_52 | 1138-1143 | hunflair:NA:Gene | denotes | OsPK2 |
| M_53 | 1285-1290 | hunflair:NA:Gene | denotes | OsPK2 |
| M_54 | 1434-1439 | hunflair:NA:Gene | denotes | OsPK2 |
| M_55 | 1679-1684 | hunflair:NA:Gene | denotes | OsPK2 |
| M_56 | 1441-1446 | hunflair:NA:Gene | denotes | PKpα1 |
| M_57 | 1034-1037 | pubtator:MESH:D000255:Chemical | denotes | ATP |
| M_58 | 26-34 | pubtator:MESH:D011773:Chemical | denotes | pyruvate |
| M_59 | 1013-1021 | pubtator:MESH:D011773:Chemical | denotes | pyruvate |
| M_60 | 1039-1047 | pubtator:MESH:D011773:Chemical | denotes | pyruvate |
| M_61 | 1595-1614 | pubtator:MESH:D008659:Disease | denotes | metabolic disorders |
| M_62 | 54-58 | pubtator:4530:Species | denotes | rice |
| M_63 | 388-392 | pubtator:4530:Species | denotes | rice |
| M_64 | 489-493 | pubtator:4530:Species | denotes | rice |
| M_65 | 1177-1181 | pubtator:4530:Species | denotes | rice |
| M_66 | 1473-1477 | pubtator:4530:Species | denotes | rice |
| M_67 | 1855-1859 | pubtator:4530:Species | denotes | rice |
| M_68 | 178-191 | pubtator:3193:Species | denotes | higher plants |
| M_69 | 1039-1051 | pubtator:MESH:D011773:Chemical | denotes | pyruvate 2-O |
OryzaGP_2021
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-5 | http://identifiers.org/oryzabase.gene/9856 | denotes | OsPK2 |
| T2 | 26-41 | http://identifiers.org/oryzabase.gene/17653 | denotes | pyruvate kinase |
| T3 | 26-41 | http://identifiers.org/oryzabase.gene/14453 | denotes | pyruvate kinase |
| T4 | 551-556 | http://identifiers.org/oryzabase.gene/9856 | denotes | ospk2 |
| T5 | 835-840 | http://identifiers.org/oryzabase.gene/9856 | denotes | ospk2 |
| T6 | 877-882 | http://identifiers.org/oryzabase.gene/9856 | denotes | ospk2 |
| T7 | 979-984 | http://identifiers.org/oryzabase.gene/9856 | denotes | OsPK2 |
| T8 | 1013-1028 | http://identifiers.org/oryzabase.gene/17653 | denotes | pyruvate kinase |
| T9 | 1013-1028 | http://identifiers.org/oryzabase.gene/14453 | denotes | pyruvate kinase |
| T10 | 1030-1032 | http://identifiers.org/oryzabase.gene/16112 | denotes | PK |
| T11 | 1034-1037 | http://identifiers.org/oryzabase.gene/639 | denotes | ATP |
| T12 | 1039-1047 | http://identifiers.org/oryzabase.gene/6002 | denotes | pyruvate |
| T13 | 1138-1143 | http://identifiers.org/oryzabase.gene/9856 | denotes | OsPK2 |
| T14 | 1285-1290 | http://identifiers.org/oryzabase.gene/9856 | denotes | OsPK2 |
| T15 | 1365-1367 | http://identifiers.org/oryzabase.gene/16112 | denotes | PK |
| T16 | 1434-1439 | http://identifiers.org/oryzabase.gene/9856 | denotes | OsPK2 |
| T17 | 1679-1684 | http://identifiers.org/oryzabase.gene/9856 | denotes | OsPK2 |
| T55583 | 0-5 | http://identifiers.org/ricegap/LOC_Os02g57530 | denotes | OsPK2 |
| T88193 | 26-41 | http://identifiers.org/ricegap/LOC_Os11g10980 | denotes | pyruvate kinase |
| T48785 | 26-41 | http://identifiers.org/ricegap/LOC_Os04g58110 | denotes | pyruvate kinase |
| T35839 | 551-556 | http://identifiers.org/ricegap/LOC_Os02g57530 | denotes | ospk2 |
| T7592 | 835-840 | http://identifiers.org/ricegap/LOC_Os02g57530 | denotes | ospk2 |
| T26876 | 877-882 | http://identifiers.org/ricegap/LOC_Os02g57530 | denotes | ospk2 |
| T57556 | 979-984 | http://identifiers.org/ricegap/LOC_Os02g57530 | denotes | OsPK2 |
| T17038 | 1013-1028 | http://identifiers.org/ricegap/LOC_Os11g10980 | denotes | pyruvate kinase |
| T33039 | 1013-1028 | http://identifiers.org/ricegap/LOC_Os04g58110 | denotes | pyruvate kinase |
| T37094 | 1030-1032 | http://identifiers.org/ricegap/LOC_Os06g18000 | denotes | PK |
| T79500 | 1039-1047 | http://identifiers.org/ricegap/LOC_Os05g33570 | denotes | pyruvate |
| T7941 | 1138-1143 | http://identifiers.org/ricegap/LOC_Os02g57530 | denotes | OsPK2 |
| T22660 | 1211-1223 | http://identifiers.org/ricegap/LOC_Os09g17740 | denotes | chloroplasts |
| T51323 | 1211-1223 | http://identifiers.org/ricegap/LOC_Os06g51084 | denotes | chloroplasts |
| T76745 | 1211-1223 | http://identifiers.org/ricegap/LOC_Os06g12450 | denotes | chloroplasts |
| T35012 | 1211-1223 | http://identifiers.org/ricegap/LOC_Os04g56400 | denotes | chloroplasts |
| T8855 | 1285-1290 | http://identifiers.org/ricegap/LOC_Os02g57530 | denotes | OsPK2 |
| T18 | 1365-1367 | http://identifiers.org/ricegap/LOC_Os06g18000 | denotes | PK |
| T19 | 1434-1439 | http://identifiers.org/ricegap/LOC_Os02g57530 | denotes | OsPK2 |
| T20 | 1679-1684 | http://identifiers.org/ricegap/LOC_Os02g57530 | denotes | OsPK2 |
| T42627 | 0-5 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | OsPK2 |
| T81676 | 26-41 | http://identifiers.org/rapdb.locus/Os11g0216000 | denotes | pyruvate kinase |
| T75904 | 26-41 | http://identifiers.org/rapdb.locus/Os04g0677500 | denotes | pyruvate kinase |
| T71921 | 551-556 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | ospk2 |
| T96042 | 835-840 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | ospk2 |
| T17454 | 877-882 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | ospk2 |
| T74139 | 979-984 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | OsPK2 |
| T87017 | 1013-1028 | http://identifiers.org/rapdb.locus/Os11g0216000 | denotes | pyruvate kinase |
| T29618 | 1013-1028 | http://identifiers.org/rapdb.locus/Os04g0677500 | denotes | pyruvate kinase |
| T26719 | 1030-1032 | http://identifiers.org/rapdb.locus/Os06g0288100 | denotes | PK |
| T15599 | 1039-1047 | http://identifiers.org/rapdb.locus/Os05g0405000 | denotes | pyruvate |
| T85076 | 1138-1143 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | OsPK2 |
| T628 | 1211-1223 | http://identifiers.org/rapdb.locus/Os09g0346500 | denotes | chloroplasts |
| T80913 | 1211-1223 | http://identifiers.org/rapdb.locus/Os06g0726400 | denotes | chloroplasts |
| T25725 | 1211-1223 | http://identifiers.org/rapdb.locus/Os06g0229800 | denotes | chloroplasts |
| T21779 | 1211-1223 | http://identifiers.org/rapdb.locus/Os04g0659100 | denotes | chloroplasts |
| T82510 | 1285-1290 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | OsPK2 |
| T15850 | 1365-1367 | http://identifiers.org/rapdb.locus/Os06g0288100 | denotes | PK |
| T91353 | 1434-1439 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | OsPK2 |
| T49895 | 1679-1684 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | OsPK2 |
| T74372 | 0-5 | http://identifiers.org/uniprot/Q944U1 | denotes | OsPK2 |
| T78817 | 26-41 | http://identifiers.org/uniprot/Q7XKB5 | denotes | pyruvate kinase |
| T48820 | 26-41 | http://identifiers.org/uniprot/Q259K4 | denotes | pyruvate kinase |
| T47155 | 979-984 | http://identifiers.org/uniprot/Q944U1 | denotes | OsPK2 |
| T46407 | 1013-1028 | http://identifiers.org/uniprot/Q7XKB5 | denotes | pyruvate kinase |
| T17395 | 1013-1028 | http://identifiers.org/uniprot/Q259K4 | denotes | pyruvate kinase |
| T94442 | 1030-1032 | http://identifiers.org/uniprot/A1XFD8 | denotes | PK |
| T64100 | 1138-1143 | http://identifiers.org/uniprot/Q944U1 | denotes | OsPK2 |
| T27385 | 1285-1290 | http://identifiers.org/uniprot/Q944U1 | denotes | OsPK2 |
| T11472 | 1365-1367 | http://identifiers.org/uniprot/A1XFD8 | denotes | PK |
| T16401 | 1434-1439 | http://identifiers.org/uniprot/Q944U1 | denotes | OsPK2 |
| T46769 | 1679-1684 | http://identifiers.org/uniprot/Q944U1 | denotes | OsPK2 |
| M_0 | 1498-1503 | hunflair:NA:Gene | denotes | PKpα2 |
| M_1 | 0-5 | hunflair:NA:Gene | denotes | OsPK2 |
| M_2 | 979-984 | hunflair:NA:Gene | denotes | OsPK2 |
| M_3 | 1138-1143 | hunflair:NA:Gene | denotes | OsPK2 |
| M_4 | 1285-1290 | hunflair:NA:Gene | denotes | OsPK2 |
| M_5 | 1434-1439 | hunflair:NA:Gene | denotes | OsPK2 |
| M_6 | 1679-1684 | hunflair:NA:Gene | denotes | OsPK2 |
| M_7 | 26-34 | hunflair:NA:Chemical | denotes | pyruvate |
| M_8 | 1013-1021 | hunflair:NA:Chemical | denotes | pyruvate |
| M_9 | 1039-1047 | hunflair:NA:Chemical | denotes | pyruvate |
| M_10 | 1030-1032 | hunflair:NA:Gene | denotes | PK |
| M_11 | 1365-1367 | hunflair:NA:Gene | denotes | PK |
| M_12 | 54-58 | hunflair:NA:Species | denotes | rice |
| M_13 | 388-392 | hunflair:NA:Species | denotes | rice |
| M_14 | 489-493 | hunflair:NA:Species | denotes | rice |
| M_15 | 1177-1181 | hunflair:NA:Species | denotes | rice |
| M_16 | 1473-1477 | hunflair:NA:Species | denotes | rice |
| M_17 | 1855-1859 | hunflair:NA:Species | denotes | rice |
| M_18 | 1505-1510 | hunflair:NA:Gene | denotes | PKpβ1 |
| M_19 | 26-41 | hunflair:NA:Gene | denotes | pyruvate kinase |
| M_20 | 1013-1028 | hunflair:NA:Gene | denotes | pyruvate kinase |
| M_21 | 1515-1520 | hunflair:NA:Gene | denotes | PKpβ2 |
| M_22 | 551-556 | hunflair:NA:Gene | denotes | ospk2 |
| M_23 | 835-840 | hunflair:NA:Gene | denotes | ospk2 |
| M_24 | 877-882 | hunflair:NA:Gene | denotes | ospk2 |
| M_25 | 1072-1083 | hunflair:NA:Gene | denotes | EC 2.7.1.40 |
| M_26 | 1441-1446 | hunflair:NA:Gene | denotes | PKpα1 |
| M_27 | 1211-1223 | hunflair:NA:Gene | denotes | chloroplasts |
| M_28 | 1034-1037 | hunflair:NA:Chemical | denotes | ATP |
| M_29 | 1595-1614 | hunflair:NA:Disease | denotes | metabolic disorders |
OryzaGP_2022
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 26-41 | http://identifiers.org/oryzabase.gene/14453 | denotes | pyruvate kinase |
| T2 | 895-896 | http://identifiers.org/oryzabase.gene/11216 | denotes | 1 |
| T3 | 1013-1028 | http://identifiers.org/oryzabase.gene/14453 | denotes | pyruvate kinase |
OryzaGP_2021_v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-5 | http://identifiers.org/oryzabase.gene/9856 | denotes | OsPK2 |
| T2 | 979-984 | http://identifiers.org/oryzabase.gene/9856 | denotes | OsPK2 |
| T3 | 1030-1032 | http://identifiers.org/oryzabase.gene/16112 | denotes | PK |
| T4 | 1034-1037 | http://identifiers.org/oryzabase.gene/639 | denotes | ATP |
| T5 | 1138-1143 | http://identifiers.org/oryzabase.gene/9856 | denotes | OsPK2 |
| T6 | 1285-1290 | http://identifiers.org/oryzabase.gene/9856 | denotes | OsPK2 |
| T7 | 1365-1367 | http://identifiers.org/oryzabase.gene/16112 | denotes | PK |
| T8 | 1434-1439 | http://identifiers.org/oryzabase.gene/9856 | denotes | OsPK2 |
| T9 | 1679-1684 | http://identifiers.org/oryzabase.gene/9856 | denotes | OsPK2 |
| T90774 | 0-5 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | OsPK2 |
| T60577 | 979-984 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | OsPK2 |
| T9278 | 1030-1032 | http://identifiers.org/rapdb.locus/Os06g0288100 | denotes | PK |
| T80992 | 1138-1143 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | OsPK2 |
| T9268 | 1285-1290 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | OsPK2 |
| T96733 | 1365-1367 | http://identifiers.org/rapdb.locus/Os06g0288100 | denotes | PK |
| T38904 | 1434-1439 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | OsPK2 |
| T615 | 1679-1684 | http://identifiers.org/rapdb.locus/Os02g0820900 | denotes | OsPK2 |
OryzaGP_2021_FLAIR
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 1498-1503 | hunflair:NA:Gene | denotes | PKpα2 |
| M_1 | 0-5 | hunflair:NA:Gene | denotes | OsPK2 |
| M_2 | 979-984 | hunflair:NA:Gene | denotes | OsPK2 |
| M_3 | 1138-1143 | hunflair:NA:Gene | denotes | OsPK2 |
| M_4 | 1285-1290 | hunflair:NA:Gene | denotes | OsPK2 |
| M_5 | 1434-1439 | hunflair:NA:Gene | denotes | OsPK2 |
| M_6 | 1679-1684 | hunflair:NA:Gene | denotes | OsPK2 |
| M_7 | 26-34 | hunflair:NA:Chemical | denotes | pyruvate |
| M_8 | 1013-1021 | hunflair:NA:Chemical | denotes | pyruvate |
| M_9 | 1039-1047 | hunflair:NA:Chemical | denotes | pyruvate |
| M_10 | 1030-1032 | hunflair:NA:Gene | denotes | PK |
| M_11 | 1365-1367 | hunflair:NA:Gene | denotes | PK |
| M_12 | 54-58 | hunflair:NA:Species | denotes | rice |
| M_13 | 388-392 | hunflair:NA:Species | denotes | rice |
| M_14 | 489-493 | hunflair:NA:Species | denotes | rice |
| M_15 | 1177-1181 | hunflair:NA:Species | denotes | rice |
| M_16 | 1473-1477 | hunflair:NA:Species | denotes | rice |
| M_17 | 1855-1859 | hunflair:NA:Species | denotes | rice |
| M_18 | 1505-1510 | hunflair:NA:Gene | denotes | PKpβ1 |
| M_19 | 26-41 | hunflair:NA:Gene | denotes | pyruvate kinase |
| M_20 | 1013-1028 | hunflair:NA:Gene | denotes | pyruvate kinase |
| M_21 | 1515-1520 | hunflair:NA:Gene | denotes | PKpβ2 |
| M_22 | 551-556 | hunflair:NA:Gene | denotes | ospk2 |
| M_23 | 835-840 | hunflair:NA:Gene | denotes | ospk2 |
| M_24 | 877-882 | hunflair:NA:Gene | denotes | ospk2 |
| M_25 | 1072-1083 | hunflair:NA:Gene | denotes | EC 2.7.1.40 |
| M_26 | 1441-1446 | hunflair:NA:Gene | denotes | PKpα1 |
| M_27 | 1211-1223 | hunflair:NA:Gene | denotes | chloroplasts |
| M_28 | 1034-1037 | hunflair:NA:Chemical | denotes | ATP |
| M_29 | 1595-1614 | hunflair:NA:Disease | denotes | metabolic disorders |
funRiceGenes-all
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PTO-all_T1 | 69-75 | http://purl.obolibrary.org/obo/TO_0000698 | denotes | starch |
| PTO-all_T2 | 133-139 | http://purl.obolibrary.org/obo/TO_0000698 | denotes | Starch |
| PTO-all_T3 | 236-242 | http://purl.obolibrary.org/obo/TO_0000698 | denotes | starch |
| PTO-all_T4 | 435-441 | http://purl.obolibrary.org/obo/TO_0000698 | denotes | starch |
| PTO-all_T5 | 593-605 | http://purl.obolibrary.org/obo/TO_0000919 | denotes | grain weight |
| PTO-all_T6 | 617-631 | http://purl.obolibrary.org/obo/TO_0000696 | denotes | starch content |
| PTO-all_T7 | 650-656 | http://purl.obolibrary.org/obo/TO_0000698 | denotes | starch |
| PTO-all_T8 | 730-736 | http://purl.obolibrary.org/obo/TO_0000698 | denotes | starch |
| PTO-all_T9 | 857-873 | http://purl.obolibrary.org/obo/TO_0000430 | denotes | germination rate |
| PTO-all_T10 | 1726-1732 | http://purl.obolibrary.org/obo/TO_0000698 | denotes | starch |
funRiceGenes-exact
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PTO-exact_T1 | 593-605 | http://purl.obolibrary.org/obo/TO_0000919 | denotes | grain weight |
| PTO-exact_T2 | 617-631 | http://purl.obolibrary.org/obo/TO_0000696 | denotes | starch content |
| PTO-exact_T3 | 857-873 | http://purl.obolibrary.org/obo/TO_0000430 | denotes | germination rate |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-132 | Sentence | denotes | OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling. |
| T2 | 133-192 | Sentence | denotes | Starch is the main form of energy storage in higher plants. |
| T3 | 193-332 | Sentence | denotes | Although several enzymes and regulators of starch biosynthesis have been defined, the complete molecular machinery remains largely unknown. |
| T4 | 333-460 | Sentence | denotes | Screening for irregularities in endosperm formation in rice represents valuable prospect for studying starch synthesis pathway. |
| T5 | 461-718 | Sentence | denotes | Here, we identified a novel rice white-core endosperm and defective grain filling mutant, ospk2, which displays significantly lower grain weight, decreased starch content and alteration of starch physicochemical properties when compared to wild-type grains. |
| T6 | 719-841 | Sentence | denotes | The normal starch compound granules were drastically reduced and more single granules filled the endosperm cells of ospk2. |
| T7 | 842-957 | Sentence | denotes | Meanwhile, the germination rate of ospk2 seeds after 1-year storage was observably reduced compared with wild-type. |
| T8 | 958-1137 | Sentence | denotes | Map-based cloning of OsPK2 indicated that it encodes a pyruvate kinase (PK, ATP: pyruvate 2-O-phosphotransferase, EC 2.7.1.40), which catalyses an irreversible step of glycolysis. |
| T9 | 1138-1224 | Sentence | denotes | OsPK2 has a constitutive expression in rice and its protein localizes in chloroplasts. |
| T10 | 1225-1433 | Sentence | denotes | Enzyme assay showed that the protein product from expressed OsPK2 and the crude protein extracted from tissues of wild-type exhibits strong PK activity; however, the mutant presented reduced protein activity. |
| T11 | 1434-1553 | Sentence | denotes | OsPK2 (PKpα1) and three other putative rice plastidic isozymes, PKpα2, PKpβ1 and PKpβ2, can interact to form heteromer. |
| T12 | 1554-1615 | Sentence | denotes | Moreover, the mutation leads to multiple metabolic disorders. |
| T13 | 1616-1874 | Sentence | denotes | Altogether, these results denote new insights into the role of OsPK2 in plant seed development, especially in starch synthesis, compound granules formation and grain filling, which would be useful for genetic improvement of high yield and rice grain quality. |