> top > docs > PubMed:29222496 > annotations

PubMed:29222496 JSONTXT

Annnotations TAB JSON ListView MergeView

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 16-38 xzyao:42238 denotes gene-based association
M_1 941-963 xzyao:42238 denotes gene-based association
M_2 1217-1239 xzyao:42238 denotes gene-based association
M_3 136-143 WTO:0000048, funRiceGene:27 denotes quality
M_4 873-880 WTO:0000048, funRiceGene:27 denotes quality
M_5 1472-1479 WTO:0000048, funRiceGene:27 denotes quality
M_6 868-880 xzyao:10528 denotes high quality
M_7 577-601 xzyao:43128 denotes apparent amylose content
M_8 645-656 funRiceGene:161 denotes temperature
M_9 117-143 xzyao:10548 denotes eating and cooking quality
M_10 1453-1479 xzyao:10548 denotes eating and cooking quality
M_11 586-601 TO:0000196, xzyao:37574 denotes amylose content
M_12 95-110 TO:0000598, xzyao:38993 denotes protein content
M_13 148-163 TO:0000598, xzyao:38993 denotes protein content
M_14 1425-1444 xzyao:38537 denotes genetic improvement
M_15 630-656 TO:0000462, xzyao:26408 denotes gelatinization temperature
M_16 391-403 xzyao:24662 denotes high density
M_17 608-623 TO:0000211, xzyao:19566 denotes gel consistency
M_18 420-435 xzyao:41190 denotes gene annotation
M_19 112-116 hunflair:NA:Species denotes Rice
M_20 748-752 hunflair:NA:Species denotes Rice
M_21 51-55 hunflair:NA:Species denotes rice
M_22 1448-1452 hunflair:NA:Species denotes rice
M_23 1149-1151 hunflair:NA:Gene denotes Wx
M_24 1156-1159 hunflair:NA:Gene denotes ALK
M_25 51-55 pubtator:4530:Species denotes rice
M_26 1448-1452 pubtator:4530:Species denotes rice
M_27 112-116 pubtator:4530:Species denotes Rice
M_28 748-752 pubtator:4530:Species denotes Rice

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 136-143 WTO:0000048, funRiceGene:27 denotes quality
M_1 873-880 WTO:0000048, funRiceGene:27 denotes quality
M_2 1472-1479 WTO:0000048, funRiceGene:27 denotes quality
M_3 148-163 TO:0000598, xzyao:599 denotes protein content
M_4 586-601 xzyao:2145 denotes amylose content
M_5 645-656 funRiceGene:161 denotes temperature
M_6 608-623 TO:0000211, xzyao:4776 denotes gel consistency
M_7 630-656 TO:0000462, xzyao:6087 denotes gelatinization temperature
M_8 586-601 TO:0000196, xzyao:11214 denotes amylose content
M_9 51-55 hunflair:NA:Species denotes rice
M_10 1448-1452 hunflair:NA:Species denotes rice
M_11 1149-1151 hunflair:NA:Gene denotes Wx
M_12 112-116 hunflair:NA:Species denotes Rice
M_13 748-752 hunflair:NA:Species denotes Rice
M_14 1156-1159 hunflair:NA:Gene denotes ALK
M_15 112-116 pubtator:4530:Species denotes Rice
M_16 748-752 pubtator:4530:Species denotes Rice
M_17 51-55 pubtator:4530:Species denotes rice
M_18 1448-1452 pubtator:4530:Species denotes rice

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 165-167 http://identifiers.org/oryzabase.gene/6115 denotes PC
T2 165-167 http://identifiers.org/oryzabase.gene/261 denotes PC
T3 165-167 http://identifiers.org/oryzabase.gene/22100 denotes PC
T4 608-623 http://identifiers.org/oryzabase.gene/122 denotes gel consistency
T5 625-627 http://identifiers.org/oryzabase.gene/20856 denotes GC
T6 625-627 http://identifiers.org/oryzabase.gene/122 denotes GC
T7 658-660 http://identifiers.org/oryzabase.gene/146 denotes GT
T8 666-668 http://identifiers.org/oryzabase.gene/6115 denotes PC
T9 666-668 http://identifiers.org/oryzabase.gene/261 denotes PC
T10 666-668 http://identifiers.org/oryzabase.gene/22100 denotes PC
T11 1110-1112 http://identifiers.org/oryzabase.gene/20856 denotes GC
T12 1110-1112 http://identifiers.org/oryzabase.gene/122 denotes GC
T13 1117-1119 http://identifiers.org/oryzabase.gene/146 denotes GT
T14 1149-1151 http://identifiers.org/oryzabase.gene/744 denotes Wx
T15 1156-1159 http://identifiers.org/oryzabase.gene/757 denotes ALK
T16 1484-1486 http://identifiers.org/oryzabase.gene/6115 denotes PC
T17 1484-1486 http://identifiers.org/oryzabase.gene/261 denotes PC
T18 1484-1486 http://identifiers.org/oryzabase.gene/22100 denotes PC
T37909 165-167 http://identifiers.org/ricegap/LOC_Os06g01210 denotes PC
T24080 165-167 http://identifiers.org/ricegap/LOC_Os05g33150 denotes PC
T13680 666-668 http://identifiers.org/ricegap/LOC_Os06g01210 denotes PC
T86071 666-668 http://identifiers.org/ricegap/LOC_Os05g33150 denotes PC
T4593 1149-1151 http://identifiers.org/ricegap/LOC_Os06g04200 denotes Wx
T70120 1156-1159 http://identifiers.org/ricegap/LOC_Os06g12450 denotes ALK
T22713 1484-1486 http://identifiers.org/ricegap/LOC_Os06g01210 denotes PC
T74878 1484-1486 http://identifiers.org/ricegap/LOC_Os05g33150 denotes PC
T80103 165-167 http://identifiers.org/rapdb.locus/Os06g0101600 denotes PC
T21704 165-167 http://identifiers.org/rapdb.locus/Os05g0399700 denotes PC
T36507 666-668 http://identifiers.org/rapdb.locus/Os06g0101600 denotes PC
T82610 666-668 http://identifiers.org/rapdb.locus/Os05g0399700 denotes PC
T64871 1149-1151 http://identifiers.org/rapdb.locus/Os06g0133000 denotes Wx
T81907 1156-1159 http://identifiers.org/rapdb.locus/Os06g0229800 denotes ALK
T75538 1484-1486 http://identifiers.org/rapdb.locus/Os06g0101600 denotes PC
T53061 1484-1486 http://identifiers.org/rapdb.locus/Os05g0399700 denotes PC
T45910 165-167 http://identifiers.org/uniprot/Q7Y1Z1 denotes PC
T38929 165-167 http://identifiers.org/uniprot/Q0DFC9 denotes PC
T22116 666-668 http://identifiers.org/uniprot/Q7Y1Z1 denotes PC
T34217 666-668 http://identifiers.org/uniprot/Q0DFC9 denotes PC
T40952 1149-1151 http://identifiers.org/uniprot/Q0DEV5 denotes Wx
T77099 1156-1159 http://identifiers.org/uniprot/Q0DDE3 denotes ALK
T91444 1484-1486 http://identifiers.org/uniprot/Q7Y1Z1 denotes PC
T62634 1484-1486 http://identifiers.org/uniprot/Q0DFC9 denotes PC
M_0 1156-1159 hunflair:NA:Gene denotes ALK
M_1 112-116 hunflair:NA:Species denotes Rice
M_2 748-752 hunflair:NA:Species denotes Rice
M_3 1149-1151 hunflair:NA:Gene denotes Wx
M_4 51-55 hunflair:NA:Species denotes rice
M_5 1448-1452 hunflair:NA:Species denotes rice

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 165-167 http://identifiers.org/oryzabase.gene/6115 denotes PC
T2 165-167 http://identifiers.org/oryzabase.gene/261 denotes PC
T3 165-167 http://identifiers.org/oryzabase.gene/22100 denotes PC
T4 608-611 http://identifiers.org/oryzabase.gene/2454 denotes gel
T5 625-627 http://identifiers.org/oryzabase.gene/20856 denotes GC
T6 658-660 http://identifiers.org/oryzabase.gene/146 denotes GT
T7 666-668 http://identifiers.org/oryzabase.gene/6115 denotes PC
T8 666-668 http://identifiers.org/oryzabase.gene/261 denotes PC
T9 666-668 http://identifiers.org/oryzabase.gene/22100 denotes PC
T10 1110-1112 http://identifiers.org/oryzabase.gene/20856 denotes GC
T11 1117-1119 http://identifiers.org/oryzabase.gene/146 denotes GT
T12 1149-1151 http://identifiers.org/oryzabase.gene/744 denotes Wx
T13 1156-1159 http://identifiers.org/oryzabase.gene/757 denotes ALK
T14 1484-1486 http://identifiers.org/oryzabase.gene/6115 denotes PC
T15 1484-1486 http://identifiers.org/oryzabase.gene/261 denotes PC
T16 1484-1486 http://identifiers.org/oryzabase.gene/22100 denotes PC
T40341 165-167 http://identifiers.org/rapdb.locus/Os06g0101600 denotes PC
T4759 165-167 http://identifiers.org/rapdb.locus/Os05g0399700 denotes PC
T81411 666-668 http://identifiers.org/rapdb.locus/Os06g0101600 denotes PC
T36529 666-668 http://identifiers.org/rapdb.locus/Os05g0399700 denotes PC
T73713 1149-1151 http://identifiers.org/rapdb.locus/Os06g0133000 denotes Wx
T18722 1156-1159 http://identifiers.org/rapdb.locus/Os06g0229800 denotes ALK
T68779 1484-1486 http://identifiers.org/rapdb.locus/Os06g0101600 denotes PC
T74689 1484-1486 http://identifiers.org/rapdb.locus/Os05g0399700 denotes PC

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 608-623 http://identifiers.org/oryzabase.gene/122 denotes gel consistency

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 1156-1159 hunflair:NA:Gene denotes ALK
M_1 112-116 hunflair:NA:Species denotes Rice
M_2 748-752 hunflair:NA:Species denotes Rice
M_3 1149-1151 hunflair:NA:Gene denotes Wx
M_4 51-55 hunflair:NA:Species denotes rice
M_5 1448-1452 hunflair:NA:Species denotes rice

funRiceGenes-all

Id Subject Object Predicate Lexical cue
PTO-all_T1 95-110 http://purl.obolibrary.org/obo/TO_0000598 denotes protein content
PTO-all_T2 148-163 http://purl.obolibrary.org/obo/TO_0000598 denotes protein content
PTO-all_T3 586-601 http://purl.obolibrary.org/obo/TO_0000196 denotes amylose content
PTO-all_T4 603-605 http://purl.obolibrary.org/obo/TO_0000294 denotes AC
PTO-all_T5 608-623 http://purl.obolibrary.org/obo/TO_0000211 denotes gel consistency
PTO-all_T6 630-656 http://purl.obolibrary.org/obo/TO_0000462 denotes gelatinization temperature
PTO-all_T7 1106-1108 http://purl.obolibrary.org/obo/TO_0000294 denotes AC

funRiceGenes-exact

Id Subject Object Predicate Lexical cue
PTO-exact_T1 95-110 http://purl.obolibrary.org/obo/TO_0000598 denotes protein content
PTO-exact_T2 148-163 http://purl.obolibrary.org/obo/TO_0000598 denotes protein content
PTO-exact_T3 586-601 http://purl.obolibrary.org/obo/TO_0000196 denotes amylose content
PTO-exact_T4 608-623 http://purl.obolibrary.org/obo/TO_0000211 denotes gel consistency
PTO-exact_T5 630-656 http://purl.obolibrary.org/obo/TO_0000462 denotes gelatinization temperature

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 586-593 Glycan denotes amylose https://api.glycosmos.org/wurcs2image/latest/png/binary/G05740LL

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 51-55 OrganismTaxon denotes rice 4530
T2 112-116 OrganismTaxon denotes Rice 4530
T3 748-752 OrganismTaxon denotes Rice 4530
T4 1448-1452 OrganismTaxon denotes rice 4530

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-111 Sentence denotes Genome-wide and gene-based association mapping for rice eating and cooking characteristics and protein content.
T2 112-249 Sentence denotes Rice eating and cooking quality and protein content (PC) are important properties affecting consumers' preferences, nutrition and health.
T3 250-530 Sentence denotes Linkage QTL mapping and association studies are usually applied to genetically dissect related traits, which could be further facilitated by high density SNP markers and gene annotation based on reference genome to rapid identify candidate genes associated with interested traits.
T4 531-824 Sentence denotes Here, we carried out an association study for apparent amylose content (AC), gel consistency (GC), gelatinization temperature (GT) and PC evaluated in two environments using a diverse panel of 258 accessions from 3 K Rice Genome Project. Wide phenotypic variations were observed in this panel.
T5 825-930 Sentence denotes Genome-wide association study using 22,488 high quality SNPs identified 19 QTL affecting the four traits.
T6 931-1179 Sentence denotes Combining gene-based association study and haplotype analyses plus functional annotation allowed us to shortlist nine candidate genes for four important QTL regions affecting AC, GC and GT, including two cloned genes (Wx and ALK), and seven novels.
T7 1180-1326 Sentence denotes The research suggested that GWAS and gene-based association analysis followed by haplotype analysis is an effective way to detect candidate genes.
T8 1327-1487 Sentence denotes The identified genes and QTL provided valuable sources for future functional characterization and genetic improvement of rice eating and cooking quality and PC.

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 586-593 Glycan denotes amylose https://api.glycosmos.org/wurcs2image/latest/png/binary/G05740LL

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 51-55 OrganismTaxon denotes rice 4530
T2 112-116 OrganismTaxon denotes Rice 4530
T3 748-752 OrganismTaxon denotes Rice 4530
T4 1448-1452 OrganismTaxon denotes rice 4530