> top > docs > PubMed:29035627 > annotations

PubMed:29035627 JSONTXT

Annnotations TAB JSON ListView MergeView

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 212-222 PO:0005702 denotes aerenchyma
M_1 319-329 PO:0005702 denotes aerenchyma
M_2 629-639 PO:0005702 denotes aerenchyma
M_3 719-729 PO:0005702 denotes aerenchyma
M_4 862-872 PO:0005702 denotes aerenchyma
M_5 362-385 funRiceGene:348, xzyao:7774 denotes reactive oxygen species
M_6 610-614 PO:0009005, funRiceGene:362 denotes root
M_7 201-222 PO:0005706, xzyao:2192 denotes lysigenous aerenchyma
M_8 292-304 hunflair:NA:Species denotes Oryza sativa
M_9 0-15 hunflair:NA:Gene denotes METALLOTHIONEIN
M_10 429-431 hunflair:NA:Gene denotes MT
M_11 593-595 hunflair:NA:Gene denotes MT
M_12 133-137 hunflair:NA:Species denotes rice
M_13 500-504 hunflair:NA:Species denotes rice
M_14 886-890 hunflair:NA:Species denotes rice
M_15 412-427 hunflair:NA:Gene denotes Metallothionein
M_16 530-534 hunflair:NA:Gene denotes MT1a
M_17 677-681 hunflair:NA:Gene denotes MT1a
M_18 551-556 hunflair:NA:Gene denotes MT1Ld
M_19 692-697 hunflair:NA:Gene denotes MT1Ld
M_20 286-290 hunflair:NA:Species denotes Rice
M_21 536-540 hunflair:NA:Gene denotes MT1b
M_22 683-687 hunflair:NA:Gene denotes MT1b
M_23 371-377 hunflair:NA:Chemical denotes oxygen
M_24 837-840 hunflair:NA:Gene denotes MT1
M_25 542-546 hunflair:NA:Gene denotes MT1c
M_26 348-356 pubtator:MESH:D005030:Chemical denotes ethylene
M_27 371-377 pubtator:MESH:D010100:Chemical denotes oxygen
M_28 445-453 pubtator:MESH:D003545:Chemical denotes cysteine
M_29 133-137 pubtator:4530:Species denotes rice
M_30 500-504 pubtator:4530:Species denotes rice
M_31 886-890 pubtator:4530:Species denotes rice
M_32 292-304 pubtator:4530:Species denotes Oryza sativa
M_33 286-290 pubtator:4530:Species denotes Rice

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 292-304 xzyao:1553 denotes Oryza sativa
M_1 362-385 funRiceGene:348, xzyao:30433 denotes reactive oxygen species
M_2 500-510 xzyao:23262 denotes rice roots
M_3 886-896 xzyao:23262 denotes rice roots
M_4 31-45 xzyao:824 denotes ROS scavenging
M_5 80-84 PO:0009005, funRiceGene:362 denotes root
M_6 610-614 PO:0009005, funRiceGene:362 denotes root
M_7 99-129 xzyao:9109 denotes inducible aerenchyma formation
M_8 270-284 xzyao:630 denotes cortical cells
M_9 85-91 PO:0005708 denotes cortex
M_10 615-621 PO:0005708 denotes cortex
M_11 793-799 PO:0005708 denotes cortex
M_12 362-377 xzyao:38879 denotes reactive oxygen
M_13 109-129 xzyao:1620 denotes aerenchyma formation
M_14 319-339 xzyao:1620 denotes aerenchyma formation
M_15 719-739 xzyao:1620 denotes aerenchyma formation
M_16 862-882 xzyao:1620 denotes aerenchyma formation
M_17 80-91 PO:0000258, xzyao:40979 denotes root cortex
M_18 610-621 PO:0000258, xzyao:40979 denotes root cortex
M_19 109-119 PO:0005702 denotes aerenchyma
M_20 212-222 PO:0005702 denotes aerenchyma
M_21 319-329 PO:0005702 denotes aerenchyma
M_22 629-639 PO:0005702 denotes aerenchyma
M_23 719-729 PO:0005702 denotes aerenchyma
M_24 862-872 PO:0005702 denotes aerenchyma
M_25 348-356 funRiceGene:332 denotes ethylene
M_26 201-222 PO:0005706 denotes lysigenous aerenchyma
M_27 551-556 hunflair:NA:Gene denotes MT1Ld
M_28 692-697 hunflair:NA:Gene denotes MT1Ld
M_29 412-427 hunflair:NA:Gene denotes Metallothionein
M_30 371-377 hunflair:NA:Chemical denotes oxygen
M_31 429-431 hunflair:NA:Gene denotes MT
M_32 593-595 hunflair:NA:Gene denotes MT
M_33 286-290 hunflair:NA:Species denotes Rice
M_34 292-304 hunflair:NA:Species denotes Oryza sativa
M_35 530-534 hunflair:NA:Gene denotes MT1a
M_36 677-681 hunflair:NA:Gene denotes MT1a
M_37 542-546 hunflair:NA:Gene denotes MT1c
M_38 837-840 hunflair:NA:Gene denotes MT1
M_39 133-137 hunflair:NA:Species denotes rice
M_40 500-504 hunflair:NA:Species denotes rice
M_41 886-890 hunflair:NA:Species denotes rice
M_42 536-540 hunflair:NA:Gene denotes MT1b
M_43 683-687 hunflair:NA:Gene denotes MT1b
M_44 0-15 hunflair:NA:Gene denotes METALLOTHIONEIN
M_45 286-290 pubtator:4530:Species denotes Rice
M_46 348-356 pubtator:MESH:D005030:Chemical denotes ethylene
M_47 371-377 pubtator:MESH:D010100:Chemical denotes oxygen
M_48 133-137 pubtator:4530:Species denotes rice
M_49 500-504 pubtator:4530:Species denotes rice
M_50 886-890 pubtator:4530:Species denotes rice
M_51 445-453 pubtator:MESH:D003545:Chemical denotes cysteine
M_52 292-304 pubtator:4530:Species denotes Oryza sativa

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 429-431 http://identifiers.org/oryzabase.gene/8728 denotes MT
T2 530-534 http://identifiers.org/oryzabase.gene/11117 denotes MT1a
T3 536-540 http://identifiers.org/oryzabase.gene/11115 denotes MT1b
T4 536-540 http://identifiers.org/oryzabase.gene/11114 denotes MT1b
T5 542-546 http://identifiers.org/oryzabase.gene/9280 denotes MT1c
T6 542-546 http://identifiers.org/oryzabase.gene/11118 denotes MT1c
T7 542-546 http://identifiers.org/oryzabase.gene/11116 denotes MT1c
T8 551-556 http://identifiers.org/oryzabase.gene/22087 denotes MT1Ld
T9 593-595 http://identifiers.org/oryzabase.gene/8728 denotes MT
T10 677-681 http://identifiers.org/oryzabase.gene/11117 denotes MT1a
T11 683-687 http://identifiers.org/oryzabase.gene/11115 denotes MT1b
T12 683-687 http://identifiers.org/oryzabase.gene/11114 denotes MT1b
T13 692-697 http://identifiers.org/oryzabase.gene/22087 denotes MT1Ld
T90163 429-431 http://identifiers.org/rapdb.locus/Os04g0602400 denotes MT
T73026 530-534 http://identifiers.org/rapdb.locus/Os11g0704500 denotes MT1a
T76928 536-540 http://identifiers.org/rapdb.locus/Os12g0570700 denotes MT1b
T54323 536-540 http://identifiers.org/rapdb.locus/Os03g0288000 denotes MT1b
T81454 542-546 http://identifiers.org/rapdb.locus/Os12g0571100 denotes MT1c
T26559 542-546 http://identifiers.org/rapdb.locus/Os12g0568200 denotes MT1c
T89899 542-546 http://identifiers.org/rapdb.locus/Os12g0567800 denotes MT1c
T87633 551-556 http://identifiers.org/rapdb.locus/Os12g0568500 denotes MT1Ld
T29473 593-595 http://identifiers.org/rapdb.locus/Os04g0602400 denotes MT
T42834 677-681 http://identifiers.org/rapdb.locus/Os11g0704500 denotes MT1a
T36016 683-687 http://identifiers.org/rapdb.locus/Os12g0570700 denotes MT1b
T44382 683-687 http://identifiers.org/rapdb.locus/Os03g0288000 denotes MT1b
T42947 692-697 http://identifiers.org/rapdb.locus/Os12g0568500 denotes MT1Ld

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 551-556 hunflair:NA:Gene denotes MT1Ld
M_1 692-697 hunflair:NA:Gene denotes MT1Ld
M_2 348-357 hunflair:NA:Chemical denotes ethylene-
M_3 286-290 hunflair:NA:Species denotes Rice
M_4 292-304 hunflair:NA:Species denotes Oryza sativa
M_5 542-546 hunflair:NA:Gene denotes MT1c
M_6 371-377 hunflair:NA:Chemical denotes oxygen
M_7 530-534 hunflair:NA:Gene denotes MT1a
M_8 677-681 hunflair:NA:Gene denotes MT1a
M_9 429-431 hunflair:NA:Gene denotes MT
M_10 593-595 hunflair:NA:Gene denotes MT
M_11 133-137 hunflair:NA:Species denotes rice
M_12 500-504 hunflair:NA:Species denotes rice
M_13 886-890 hunflair:NA:Species denotes rice
M_14 0-15 hunflair:NA:Gene denotes METALLOTHIONEIN
M_15 412-427 hunflair:NA:Gene denotes Metallothionein
M_16 837-840 hunflair:NA:Gene denotes MT1
M_17 536-540 hunflair:NA:Gene denotes MT1b
M_18 683-687 hunflair:NA:Gene denotes MT1b

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 429-431 http://identifiers.org/oryzabase.gene/8728 denotes MT
T2 438-443 http://identifiers.org/oryzabase.gene/11165 denotes small
T3 530-534 http://identifiers.org/oryzabase.gene/11117 denotes MT1a
T4 536-540 http://identifiers.org/oryzabase.gene/11115 denotes MT1b
T5 536-540 http://identifiers.org/oryzabase.gene/11114 denotes MT1b
T6 542-546 http://identifiers.org/oryzabase.gene/9280 denotes MT1c
T7 542-546 http://identifiers.org/oryzabase.gene/11118 denotes MT1c
T8 542-546 http://identifiers.org/oryzabase.gene/11116 denotes MT1c
T9 551-556 http://identifiers.org/oryzabase.gene/22087 denotes MT1Ld
T10 593-595 http://identifiers.org/oryzabase.gene/8728 denotes MT
T11 677-681 http://identifiers.org/oryzabase.gene/11117 denotes MT1a
T12 683-687 http://identifiers.org/oryzabase.gene/11115 denotes MT1b
T13 683-687 http://identifiers.org/oryzabase.gene/11114 denotes MT1b
T14 692-697 http://identifiers.org/oryzabase.gene/22087 denotes MT1Ld
T43510 429-431 http://identifiers.org/ricegap/LOC_Os04g51330 denotes MT
T88442 438-443 http://identifiers.org/ricegap/LOC_Os02g34850 denotes small
T58798 530-534 http://identifiers.org/ricegap/LOC_Os11g47809 denotes MT1a
T95673 536-540 http://identifiers.org/ricegap/LOC_Os12g38270 denotes MT1b
T98583 536-540 http://identifiers.org/ricegap/LOC_Os03g17870 denotes MT1b
T10711 542-546 http://identifiers.org/ricegap/LOC_Os12g38300 denotes MT1c
T27054 542-546 http://identifiers.org/ricegap/LOC_Os12g38051 denotes MT1c
T40093 542-546 http://identifiers.org/ricegap/LOC_Os12g38010 denotes MT1c
T5937 551-556 http://identifiers.org/ricegap/LOC_Os12g38051 denotes MT1Ld
T33181 593-595 http://identifiers.org/ricegap/LOC_Os04g51330 denotes MT
T77327 677-681 http://identifiers.org/ricegap/LOC_Os11g47809 denotes MT1a
T80497 683-687 http://identifiers.org/ricegap/LOC_Os12g38270 denotes MT1b
T76081 683-687 http://identifiers.org/ricegap/LOC_Os03g17870 denotes MT1b
T75998 692-697 http://identifiers.org/ricegap/LOC_Os12g38051 denotes MT1Ld
T1918 429-431 http://identifiers.org/rapdb.locus/Os04g0602400 denotes MT
T94152 438-443 http://identifiers.org/rapdb.locus/Os02g0554000 denotes small
T67712 530-534 http://identifiers.org/rapdb.locus/Os11g0704500 denotes MT1a
T76849 536-540 http://identifiers.org/rapdb.locus/Os12g0570700 denotes MT1b
T45508 536-540 http://identifiers.org/rapdb.locus/Os03g0288000 denotes MT1b
T74752 542-546 http://identifiers.org/rapdb.locus/Os12g0571100 denotes MT1c
T47566 542-546 http://identifiers.org/rapdb.locus/Os12g0568200 denotes MT1c
T25470 542-546 http://identifiers.org/rapdb.locus/Os12g0567800 denotes MT1c
T7573 551-556 http://identifiers.org/rapdb.locus/Os12g0568500 denotes MT1Ld
T24783 593-595 http://identifiers.org/rapdb.locus/Os04g0602400 denotes MT
T73529 677-681 http://identifiers.org/rapdb.locus/Os11g0704500 denotes MT1a
T75064 683-687 http://identifiers.org/rapdb.locus/Os12g0570700 denotes MT1b
T60824 683-687 http://identifiers.org/rapdb.locus/Os03g0288000 denotes MT1b
T63103 692-697 http://identifiers.org/rapdb.locus/Os12g0568500 denotes MT1Ld
T95374 429-431 http://identifiers.org/uniprot/Q01HT0 denotes MT
T40863 530-534 http://identifiers.org/uniprot/B2ZSV7 denotes MT1a
T78418 536-540 http://identifiers.org/uniprot/A6N134 denotes MT1b
T13539 536-540 http://identifiers.org/uniprot/A2XFE5 denotes MT1b
T87054 542-546 http://identifiers.org/uniprot/Q2QNE8 denotes MT1c
T33509 542-546 http://identifiers.org/uniprot/Q2QNC3 denotes MT1c
T94270 551-556 http://identifiers.org/uniprot/A2ZLT5 denotes MT1Ld
T31436 593-595 http://identifiers.org/uniprot/Q01HT0 denotes MT
T20044 677-681 http://identifiers.org/uniprot/B2ZSV7 denotes MT1a
T37482 683-687 http://identifiers.org/uniprot/A6N134 denotes MT1b
T49710 683-687 http://identifiers.org/uniprot/A2XFE5 denotes MT1b
T36297 692-697 http://identifiers.org/uniprot/A2ZLT5 denotes MT1Ld
M_0 551-556 hunflair:NA:Gene denotes MT1Ld
M_1 692-697 hunflair:NA:Gene denotes MT1Ld
M_2 348-357 hunflair:NA:Chemical denotes ethylene-
M_3 286-290 hunflair:NA:Species denotes Rice
M_4 292-304 hunflair:NA:Species denotes Oryza sativa
M_5 542-546 hunflair:NA:Gene denotes MT1c
M_6 371-377 hunflair:NA:Chemical denotes oxygen
M_7 530-534 hunflair:NA:Gene denotes MT1a
M_8 677-681 hunflair:NA:Gene denotes MT1a
M_9 429-431 hunflair:NA:Gene denotes MT
M_10 593-595 hunflair:NA:Gene denotes MT
M_11 133-137 hunflair:NA:Species denotes rice
M_12 500-504 hunflair:NA:Species denotes rice
M_13 886-890 hunflair:NA:Species denotes rice
M_14 0-15 hunflair:NA:Gene denotes METALLOTHIONEIN
M_15 412-427 hunflair:NA:Gene denotes Metallothionein
M_16 837-840 hunflair:NA:Gene denotes MT1
M_17 536-540 hunflair:NA:Gene denotes MT1b
M_18 683-687 hunflair:NA:Gene denotes MT1b

funRiceGenes-all

Id Subject Object Predicate Lexical cue
PTO-all_T1 237-243 http://purl.obolibrary.org/obo/TO_0000559 denotes spaces

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-138 Sentence denotes METALLOTHIONEIN genes encoding ROS scavenging enzymes are down-regulated in the root cortex during inducible aerenchyma formation in rice.
T2 139-285 Sentence denotes Under waterlogged conditions, roots of gramineous plants form lysigenous aerenchyma (internal gas spaces) by inducing the death of cortical cells.
T3 286-411 Sentence denotes Rice (Oryza sativa) roots induce aerenchyma formation through ethylene- and reactive oxygen species (ROS)-mediated signaling.
T4 412-496 Sentence denotes Metallothionein (MT) is a small, cysteine-rich protein that acts as a ROS scavenger.
T5 497-602 Sentence denotes In rice roots, the expression of MT1a, MT1b, MT1c and MT1Ld were higher than those of the other MT genes.
T6 603-740 Sentence denotes In the root cortex, where aerenchyma forms exclusively, the expression of MT1a, MT1b and MT1Ld was reduced prior to aerenchyma formation.
T7 741-897 Sentence denotes These findings suggest that ROS accumulation in the cortex, which is aided by downregulation of MT1 genes, is needed for aerenchyma formation in rice roots.