PubMed:28756335
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/28756335","sourcedb":"PubMed","sourceid":"28756335","text":"Computational approaches to understand the adverse drug effect on potassium, sodium and calcium channels for predicting TdP cardiac arrhythmias.\nIon channels play a crucial role in the cardiovascular system. Our understanding of cardiac ion channel function has improved since their first discoveries. The flow of potassium, sodium and calcium ions across cardiomyocytes is vital for regular cardiac rhythm. Blockage of these channels, delays cardiac repolarization or tend to shorten repolarization and may induce arrhythmia. Detection of drug risk by channel blockade is considered essential for drug regulators. Advanced computational models can be used as an early screen for torsadogenic potential in drug candidates. New drug candidates that are determined to not cause blockage are more likely to pass successfully through preclinical trials and not be withdrawn later from the marketplace by manufacturer. Several different approved drugs, however, can cause a distinctive polymorphic ventricular arrhythmia known as torsade de pointes (TdP), which may lead to sudden death. The objective of the present study is to review the mechanisms and computational models used to assess the risk that a drug may TdP.\nKEY POINTS: There is strong evidence from multiple studies that blockage of the L-type calcium current reduces risk of TdP. Blockage of sodium channels slows cardiac action potential conduction, however, not all sodium channel blocking antiarrhythmic drugs produce a significant effect, while late sodium channel block reduces TdP. Interestingly, there are some drugs that block the hERG potassium channel and therefore cause QT prolongation, but they are not associated with TdP. Recent studies confirmed the necessity of studying multiple distinctionic ion channels which are responsible for cardiac related diseases or TdP, to obtain an improved clinical TdP risk prediction of compound interactions and also for designing drugs.","tracks":[{"project":"PubMed_Structured_Abstracts","denotations":[{"id":"T1","span":{"begin":145,"end":1215},"obj":"None"},{"id":"T2","span":{"begin":1228,"end":1948},"obj":"KEY POINTS"}],"attributes":[{"subj":"T1","pred":"source","obj":"PubMed_Structured_Abstracts"},{"subj":"T2","pred":"source","obj":"PubMed_Structured_Abstracts"}]},{"project":"GoldHamster","denotations":[{"id":"T1","span":{"begin":51,"end":55},"obj":"CHEBI:23888"},{"id":"T5","span":{"begin":66,"end":75},"obj":"8588"},{"id":"T2","span":{"begin":66,"end":75},"obj":"D011188"},{"id":"T3","span":{"begin":66,"end":75},"obj":"D011188"},{"id":"T4","span":{"begin":66,"end":75},"obj":"CHEBI:26216"},{"id":"T6","span":{"begin":77,"end":83},"obj":"CHEBI:26708"},{"id":"T7","span":{"begin":88,"end":95},"obj":"1895"},{"id":"T10","span":{"begin":88,"end":104},"obj":"D015220"},{"id":"T11","span":{"begin":120,"end":123},"obj":"CHEBI:61377"},{"id":"T12","span":{"begin":120,"end":123},"obj":"CHEBI:61417"},{"id":"T13","span":{"begin":124,"end":143},"obj":"D001145"},{"id":"T14","span":{"begin":124,"end":143},"obj":"D001145"},{"id":"T15","span":{"begin":185,"end":206},"obj":"UBERON:0004535"},{"id":"T17","span":{"begin":237,"end":248},"obj":"D007473"},{"id":"T21","span":{"begin":314,"end":323},"obj":"8588"},{"id":"T18","span":{"begin":314,"end":323},"obj":"D011188"},{"id":"T19","span":{"begin":314,"end":323},"obj":"D011188"},{"id":"T20","span":{"begin":314,"end":323},"obj":"CHEBI:26216"},{"id":"T22","span":{"begin":325,"end":331},"obj":"CHEBI:26708"},{"id":"T23","span":{"begin":336,"end":343},"obj":"1895"},{"id":"T26","span":{"begin":336,"end":348},"obj":"CHEBI:39124"},{"id":"T30","span":{"begin":400,"end":406},"obj":"GO:0048511"},{"id":"T31","span":{"begin":515,"end":525},"obj":"D001145"},{"id":"T32","span":{"begin":515,"end":525},"obj":"D001145"},{"id":"T33","span":{"begin":540,"end":544},"obj":"CHEBI:23888"},{"id":"T34","span":{"begin":598,"end":602},"obj":"CHEBI:23888"},{"id":"T35","span":{"begin":706,"end":710},"obj":"CHEBI:23888"},{"id":"T36","span":{"begin":727,"end":731},"obj":"CHEBI:23888"},{"id":"T37","span":{"begin":941,"end":946},"obj":"CHEBI:23888"},{"id":"T38","span":{"begin":1005,"end":1015},"obj":"D001145"},{"id":"T39","span":{"begin":1005,"end":1015},"obj":"D001145"},{"id":"T40","span":{"begin":1025,"end":1043},"obj":"D016171"},{"id":"T41","span":{"begin":1025,"end":1043},"obj":"D016171"},{"id":"T42","span":{"begin":1045,"end":1048},"obj":"CHEBI:61377"},{"id":"T43","span":{"begin":1045,"end":1048},"obj":"CHEBI:61417"},{"id":"T44","span":{"begin":1069,"end":1081},"obj":"D003645"},{"id":"T45","span":{"begin":1069,"end":1081},"obj":"D003645"},{"id":"T46","span":{"begin":1202,"end":1206},"obj":"CHEBI:23888"},{"id":"T47","span":{"begin":1211,"end":1214},"obj":"CHEBI:61377"},{"id":"T48","span":{"begin":1211,"end":1214},"obj":"CHEBI:61417"},{"id":"T49","span":{"begin":1303,"end":1310},"obj":"1895"},{"id":"T50","span":{"begin":1303,"end":1310},"obj":"CHEBI:29320"},{"id":"T51","span":{"begin":1303,"end":1310},"obj":"CHEBI:22984"},{"id":"T52","span":{"begin":1335,"end":1338},"obj":"CHEBI:61377"},{"id":"T53","span":{"begin":1335,"end":1338},"obj":"CHEBI:61417"},{"id":"T55","span":{"begin":1352,"end":1367},"obj":"D015222"},{"id":"T56","span":{"begin":1382,"end":1398},"obj":"GO:0001508"},{"id":"T58","span":{"begin":1428,"end":1442},"obj":"D015222"},{"id":"T59","span":{"begin":1452,"end":1472},"obj":"D000889"},{"id":"T60","span":{"begin":1452,"end":1472},"obj":"D000889"},{"id":"T63","span":{"begin":1514,"end":1528},"obj":"D015222"},{"id":"T64","span":{"begin":1543,"end":1546},"obj":"CHEBI:61377"},{"id":"T65","span":{"begin":1543,"end":1546},"obj":"CHEBI:61417"},{"id":"T66","span":{"begin":1578,"end":1583},"obj":"CHEBI:23888"},{"id":"T67","span":{"begin":1599,"end":1603},"obj":"PR:000000791"},{"id":"T68","span":{"begin":1599,"end":1603},"obj":"PR:Q12809"},{"id":"T69","span":{"begin":1599,"end":1603},"obj":"PR:P11308"},{"id":"T73","span":{"begin":1604,"end":1613},"obj":"8588"},{"id":"T74","span":{"begin":1604,"end":1621},"obj":"D015221"},{"id":"T75","span":{"begin":1692,"end":1695},"obj":"CHEBI:61377"},{"id":"T76","span":{"begin":1692,"end":1695},"obj":"CHEBI:61417"},{"id":"T78","span":{"begin":1771,"end":1783},"obj":"D007473"},{"id":"T79","span":{"begin":1771,"end":1783},"obj":"GO:0022831"},{"id":"T80","span":{"begin":1838,"end":1841},"obj":"CHEBI:61377"},{"id":"T81","span":{"begin":1838,"end":1841},"obj":"CHEBI:61417"},{"id":"T82","span":{"begin":1874,"end":1877},"obj":"CHEBI:61377"},{"id":"T83","span":{"begin":1874,"end":1877},"obj":"CHEBI:61417"},{"id":"T84","span":{"begin":1942,"end":1947},"obj":"CHEBI:23888"}],"attributes":[{"subj":"T1","pred":"source","obj":"GoldHamster"},{"subj":"T5","pred":"source","obj":"GoldHamster"},{"subj":"T2","pred":"source","obj":"GoldHamster"},{"subj":"T3","pred":"source","obj":"GoldHamster"},{"subj":"T4","pred":"source","obj":"GoldHamster"},{"subj":"T6","pred":"source","obj":"GoldHamster"},{"subj":"T7","pred":"source","obj":"GoldHamster"},{"subj":"T10","pred":"source","obj":"GoldHamster"},{"subj":"T11","pred":"source","obj":"GoldHamster"},{"subj":"T12","pred":"source","obj":"GoldHamster"},{"subj":"T13","pred":"source","obj":"GoldHamster"},{"subj":"T14","pred":"source","obj":"GoldHamster"},{"subj":"T15","pred":"source","obj":"GoldHamster"},{"subj":"T17","pred":"source","obj":"GoldHamster"},{"subj":"T21","pred":"source","obj":"GoldHamster"},{"subj":"T18","pred":"source","obj":"GoldHamster"},{"subj":"T19","pred":"source","obj":"GoldHamster"},{"subj":"T20","pred":"source","obj":"GoldHamster"},{"subj":"T22","pred":"source","obj":"GoldHamster"},{"subj":"T23","pred":"source","obj":"GoldHamster"},{"subj":"T26","pred":"source","obj":"GoldHamster"},{"subj":"T30","pred":"source","obj":"GoldHamster"},{"subj":"T31","pred":"source","obj":"GoldHamster"},{"subj":"T32","pred":"source","obj":"GoldHamster"},{"subj":"T33","pred":"source","obj":"GoldHamster"},{"subj":"T34","pred":"source","obj":"GoldHamster"},{"subj":"T35","pred":"source","obj":"GoldHamster"},{"subj":"T36","pred":"source","obj":"GoldHamster"},{"subj":"T37","pred":"source","obj":"GoldHamster"},{"subj":"T38","pred":"source","obj":"GoldHamster"},{"subj":"T39","pred":"source","obj":"GoldHamster"},{"subj":"T40","pred":"source","obj":"GoldHamster"},{"subj":"T41","pred":"source","obj":"GoldHamster"},{"subj":"T42","pred":"source","obj":"GoldHamster"},{"subj":"T43","pred":"source","obj":"GoldHamster"},{"subj":"T44","pred":"source","obj":"GoldHamster"},{"subj":"T45","pred":"source","obj":"GoldHamster"},{"subj":"T46","pred":"source","obj":"GoldHamster"},{"subj":"T47","pred":"source","obj":"GoldHamster"},{"subj":"T48","pred":"source","obj":"GoldHamster"},{"subj":"T49","pred":"source","obj":"GoldHamster"},{"subj":"T50","pred":"source","obj":"GoldHamster"},{"subj":"T51","pred":"source","obj":"GoldHamster"},{"subj":"T52","pred":"source","obj":"GoldHamster"},{"subj":"T53","pred":"source","obj":"GoldHamster"},{"subj":"T55","pred":"source","obj":"GoldHamster"},{"subj":"T56","pred":"source","obj":"GoldHamster"},{"subj":"T58","pred":"source","obj":"GoldHamster"},{"subj":"T59","pred":"source","obj":"GoldHamster"},{"subj":"T60","pred":"source","obj":"GoldHamster"},{"subj":"T63","pred":"source","obj":"GoldHamster"},{"subj":"T64","pred":"source","obj":"GoldHamster"},{"subj":"T65","pred":"source","obj":"GoldHamster"},{"subj":"T66","pred":"source","obj":"GoldHamster"},{"subj":"T67","pred":"source","obj":"GoldHamster"},{"subj":"T68","pred":"source","obj":"GoldHamster"},{"subj":"T69","pred":"source","obj":"GoldHamster"},{"subj":"T73","pred":"source","obj":"GoldHamster"},{"subj":"T74","pred":"source","obj":"GoldHamster"},{"subj":"T75","pred":"source","obj":"GoldHamster"},{"subj":"T76","pred":"source","obj":"GoldHamster"},{"subj":"T78","pred":"source","obj":"GoldHamster"},{"subj":"T79","pred":"source","obj":"GoldHamster"},{"subj":"T80","pred":"source","obj":"GoldHamster"},{"subj":"T81","pred":"source","obj":"GoldHamster"},{"subj":"T82","pred":"source","obj":"GoldHamster"},{"subj":"T83","pred":"source","obj":"GoldHamster"},{"subj":"T84","pred":"source","obj":"GoldHamster"}]},{"project":"Goldhamster2_Cellosaurus","denotations":[{"id":"T1","span":{"begin":163,"end":164},"obj":"CVCL_6479|Finite_cell_line|Mus musculus"},{"id":"T2","span":{"begin":258,"end":261},"obj":"CVCL_6758|Undefined_cell_line_type|Cricetulus griseus"},{"id":"T3","span":{"begin":258,"end":261},"obj":"CVCL_E689|Transformed_cell_line|Homo sapiens"},{"id":"T4","span":{"begin":504,"end":507},"obj":"CVCL_E773|Transformed_cell_line|Homo sapiens"},{"id":"T5","span":{"begin":660,"end":662},"obj":"CVCL_8754|Cancer_cell_line|Homo sapiens"},{"id":"T6","span":{"begin":660,"end":662},"obj":"CVCL_H241|Cancer_cell_line|Homo sapiens"},{"id":"T7","span":{"begin":967,"end":968},"obj":"CVCL_6479|Finite_cell_line|Mus musculus"},{"id":"T8","span":{"begin":1057,"end":1060},"obj":"CVCL_E773|Transformed_cell_line|Homo sapiens"},{"id":"T9","span":{"begin":1200,"end":1201},"obj":"CVCL_6479|Finite_cell_line|Mus musculus"},{"id":"T10","span":{"begin":1207,"end":1210},"obj":"CVCL_E773|Transformed_cell_line|Homo sapiens"},{"id":"T11","span":{"begin":1481,"end":1482},"obj":"CVCL_6479|Finite_cell_line|Mus musculus"},{"id":"T12","span":{"begin":1853,"end":1855},"obj":"CVCL_8754|Cancer_cell_line|Homo sapiens"},{"id":"T13","span":{"begin":1853,"end":1855},"obj":"CVCL_H241|Cancer_cell_line|Homo sapiens"}],"attributes":[{"subj":"T1","pred":"source","obj":"Goldhamster2_Cellosaurus"},{"subj":"T2","pred":"source","obj":"Goldhamster2_Cellosaurus"},{"subj":"T3","pred":"source","obj":"Goldhamster2_Cellosaurus"},{"subj":"T4","pred":"source","obj":"Goldhamster2_Cellosaurus"},{"subj":"T5","pred":"source","obj":"Goldhamster2_Cellosaurus"},{"subj":"T6","pred":"source","obj":"Goldhamster2_Cellosaurus"},{"subj":"T7","pred":"source","obj":"Goldhamster2_Cellosaurus"},{"subj":"T8","pred":"source","obj":"Goldhamster2_Cellosaurus"},{"subj":"T9","pred":"source","obj":"Goldhamster2_Cellosaurus"},{"subj":"T10","pred":"source","obj":"Goldhamster2_Cellosaurus"},{"subj":"T11","pred":"source","obj":"Goldhamster2_Cellosaurus"},{"subj":"T12","pred":"source","obj":"Goldhamster2_Cellosaurus"},{"subj":"T13","pred":"source","obj":"Goldhamster2_Cellosaurus"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"PubMed_Structured_Abstracts","color":"#a793ec","default":true},{"id":"GoldHamster","color":"#98ec93"},{"id":"Goldhamster2_Cellosaurus","color":"#ec93b2"}]}]}}