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PubMed:28517045 JSONTXT

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pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 1441-1459 cand:TO:0000283-biological process trait denotes important insights
M_1 1441-1459 cand:PECO:0007125-genetic environment denotes important insights
M_2 1441-1459 cand:funRiceGene:227-plant development denotes important insights
M_3 1441-1459 cand:PO:0025269-collective organ part structure denotes important insights
M_4 1441-1459 cand:PO:0007525-establishment of tissue systems stage denotes important insights
M_5 1441-1459 cand:PO:0025578-collective phyllome structure development stage denotes important insights
M_6 1441-1459 cand:TO:0002746-fruit weight denotes important insights
M_7 1441-1459 cand:funRiceGene:337-plant height denotes important insights
M_8 1441-1459 cand:TO:0000501-spikelet weight denotes important insights
M_9 1441-1459 cand:TO:0000387-plant trait denotes important insights
M_10 1441-1459 cand:WTO:0000047-plant density denotes important insights
M_11 843-859 cand:funRiceGene:171-histone trimethylation denotes H3K4 methylation
M_12 843-859 cand:funRiceGene:313-6mA demethylation denotes H3K4 methylation
M_13 843-859 cand:funRiceGene:333-transcription suppressor denotes H3K4 methylation
M_14 843-859 cand:funRiceGene:336-homeobox gene denotes H3K4 methylation
M_15 843-859 cand:TO:0000002-epigenetic trait denotes H3K4 methylation
M_16 843-859 cand:funRiceGene:32-transcription regulator denotes H3K4 methylation
M_17 843-859 cand:funRiceGene:42-demethylation denotes H3K4 methylation
M_18 843-859 cand:WTO:0000036-late maturation denotes H3K4 methylation
M_19 843-859 cand:TO:0002661-seed maturation denotes H3K4 methylation
M_20 843-859 cand:funRiceGene:203-domestication denotes H3K4 methylation
M_21 0-19 cand:WTO:0000393-Endria inimica denotes SET DOMAIN GROUP701
M_22 0-19 cand:PO:0025312-megasporangium exothecium denotes SET DOMAIN GROUP701
M_23 0-19 cand:funRiceGene:117-HIGHER YIELD RICE denotes SET DOMAIN GROUP701
M_24 0-19 cand:PO:0025311-microsporangium exothecium denotes SET DOMAIN GROUP701
M_25 0-19 cand:PECO:0007263-Maliarpha separatella exposure denotes SET DOMAIN GROUP701
M_26 0-19 cand:PECO:0007260-Diopsis macrophthalma exposure denotes SET DOMAIN GROUP701
M_27 0-19 cand:PO:0006334-seed micropyle denotes SET DOMAIN GROUP701
M_28 0-19 cand:funRiceGene:280-seed growth denotes SET DOMAIN GROUP701
M_29 0-19 cand:funRiceGene:440-seedling growth denotes SET DOMAIN GROUP701
M_30 0-19 cand:PO:0002000-stomatal complex denotes SET DOMAIN GROUP701
M_31 0-19 cand:funRiceGene:213-grain growth denotes SET DOMAIN GROUP701
M_32 1036-1057 cand:TO:0020008-sorghum grain mold denotes rice grain production
M_33 1036-1057 cand:TO:0000666-brown rice yield denotes rice grain production
M_34 1036-1057 cand:TO:0000144-milled rice yield denotes rice grain production
M_35 1036-1057 cand:TO:0000449-grain yield per plant denotes rice grain production
M_36 1036-1057 cand:funRiceGene:315-grain yield denotes rice grain production
M_37 1036-1057 cand:TO:0002658-starch grain synthesis denotes rice grain production
M_38 1036-1057 cand:funRiceGene:504-biomass production denotes rice grain production
M_39 1036-1057 cand:funRiceGene:109-phytoalexin production denotes rice grain production
M_40 1036-1057 cand:PO:0008007-nucellar projection denotes rice grain production
M_41 1036-1057 cand:funRiceGene:172-bioethanol production denotes rice grain production
M_42 1036-1057 cand:WTO:0000049-reproduction denotes rice grain production
M_43 1550-1565 cand:PO:0007016-whole plant flowering stage denotes plant flowering
M_44 1550-1565 cand:PPO:0001000-herbaceous plant denotes plant flowering
M_45 1550-1565 cand:PPO:0001001-woody plant denotes plant flowering
M_46 1550-1565 cand:PO:0020003-plant ovule denotes plant flowering
M_47 1550-1565 cand:PO:0025538-plant sap denotes plant flowering
M_48 1550-1565 cand:PECO:0007007-monocot weed plant neighbor denotes plant flowering
M_49 1550-1565 cand:TO:0000359-female flowering denotes plant flowering
M_50 1550-1565 cand:PO:0025603-plant resin denotes plant flowering
M_51 1550-1565 cand:TO:0000365-male flowering denotes plant flowering
M_52 1550-1565 cand:WTO:0000016-early flowering denotes plant flowering
M_53 1550-1565 cand:WTO:0000033-late flowering denotes plant flowering
M_54 785-791 GeneID:RAPID:Os08g0180100MSUID:LOC_Os08g08210 denotes SDG701
M_55 11-19 GeneID:NA denotes GROUP701
M_56 914-920 GeneID:RAPID:Os08g0180100MSUID:LOC_Os08g08210 denotes SDG701
M_57 1374-1380 GeneID:RAPID:Os08g0180100MSUID:LOC_Os08g08210 denotes SDG701
T4833 97-114 funRiceGene:374, xzyao:18955 denotes plant development
T53454 955-972 funRiceGene:374, xzyao:18955 denotes plant development
T16055 196-211 xzyao:22593 denotes gene regulation
T99696 1086-1095 funRiceGene:504 denotes flowering
T91052 1136-1145 funRiceGene:504 denotes flowering
T4593 1556-1565 funRiceGene:504 denotes flowering
T53818 103-114 WTO:0000011, funRiceGene:359 denotes development
T25803 751-762 WTO:0000011, funRiceGene:359 denotes development
T47441 961-972 WTO:0000011, funRiceGene:359 denotes development
T99389 403-429 xzyao:25579 denotes transcriptional activation
T60171 1080-1100 xzyao:42695 denotes plant flowering time
T52087 1080-1095 xzyao:11534 denotes plant flowering
T27991 1550-1565 xzyao:11534 denotes plant flowering
T81177 1041-1046 funRiceGene:91 denotes grain
T32912 1499-1523 xzyao:24127 denotes transcription activation
T2942 1131-1145 xzyao:13885 denotes rice flowering
T47236 657-665 xzyao:38844 denotes the gene
T73745 1086-1100 funRiceGene:89, xzyao:5715 denotes flowering time
T85002 1036-1046 xzyao:26806 denotes rice grain
T35553 740-746 WTO:0000021, funRiceGene:221 denotes growth
T30076 248-265 xzyao:35612 denotes natural variation
T97014 1036-1057 xzyao:38678 denotes rice grain production
T30854 734-746 funRiceGene:44, xzyao:29681 denotes plant growth
T37330 293-303 xzyao:24584 denotes Histone H3
T8173 1411-1428 funRiceGene:439 denotes methyltransferase
T37852 1041-1057 xzyao:18920 denotes grain production
T11327 92-114 xzyao:10802 denotes rice plant development
T85892 92-102 xzyao:28048 denotes rice plant
T26545 1322-1326 hunflair:NA:Gene denotes RFT1
T62090 1313-1317 hunflair:NA:Gene denotes Hd3a
T12167 573-593 hunflair:NA:Gene denotes SET DOMAIN GROUP 701
T79268 304-310 hunflair:NA:Chemical denotes lysine
T65392 293-303 hunflair:NA:Gene denotes Histone H3
T94255 1397-1428 hunflair:NA:Gene denotes H3K4-specific methyltransferase
T85401 11-19 hunflair:NA:Gene denotes GROUP701
T88269 30-51 hunflair:NA:Gene denotes H3K4-methytransferase
T49738 35-51 hunflair:NA:Gene denotes methytransferase
T97299 802-818 hunflair:NA:Gene denotes methytransferase
T65700 92-96 hunflair:NA:Species denotes rice
T42143 568-572 hunflair:NA:Species denotes rice
T61932 1036-1040 hunflair:NA:Species denotes rice
T2366 1131-1135 hunflair:NA:Species denotes rice
T25075 1308-1312 hunflair:NA:Species denotes rice
T2648 1392-1396 hunflair:NA:Species denotes rice
T21924 595-601 hunflair:NA:Gene denotes SDG701
T94254 785-791 hunflair:NA:Gene denotes SDG701
T94961 914-920 hunflair:NA:Gene denotes SDG701
T54043 1115-1121 hunflair:NA:Gene denotes SDG701
T21012 1213-1219 hunflair:NA:Gene denotes SDG701
T55494 1374-1380 hunflair:NA:Gene denotes SDG701
T34136 1267-1274 pubtator:MESH:C024755:Chemical denotes H3K4me3
T60857 1477-1484 pubtator:MESH:C024755:Chemical denotes H3K4me3
T89098 304-310 pubtator:MESH:C114808:Chemical denotes lysine
T55552 92-96 pubtator:4530:Species denotes rice
T70224 568-572 pubtator:4530:Species denotes rice
T95825 1036-1040 pubtator:4530:Species denotes rice
T23200 1131-1135 pubtator:4530:Species denotes rice
T86131 1308-1312 pubtator:4530:Species denotes rice
M_58 1392-1396 pubtator:4530:Species denotes rice
M_59 332-339 pubtator:MESH:C024755:Chemical denotes H3K4me2
M_60 471-478 pubtator:MESH:C024755:Chemical denotes H3K4me2

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 955-972 funRiceGene:374, xzyao:5921 denotes plant development
M_1 1086-1100 funRiceGene:89, xzyao:17041 denotes flowering time
M_2 740-746 WTO:0000021, funRiceGene:221 denotes growth
M_3 734-746 funRiceGene:44, xzyao:2989 denotes plant growth
M_4 1041-1046 funRiceGene:91 denotes grain
M_5 961-972 WTO:0000011, funRiceGene:359 denotes development
M_6 1411-1428 funRiceGene:439 denotes methyltransferase
M_7 1086-1095 funRiceGene:504 denotes flowering
M_8 1136-1145 funRiceGene:504 denotes flowering
M_9 1322-1326 hunflair:NA:Gene denotes RFT1
M_10 30-51 hunflair:NA:Gene denotes H3K4-methytransferase
M_11 304-310 hunflair:NA:Chemical denotes lysine
M_12 1397-1428 hunflair:NA:Gene denotes H3K4-specific methyltransferase
M_13 92-96 hunflair:NA:Species denotes rice
M_14 568-572 hunflair:NA:Species denotes rice
M_15 1036-1040 hunflair:NA:Species denotes rice
M_16 1131-1135 hunflair:NA:Species denotes rice
M_17 1308-1312 hunflair:NA:Species denotes rice
M_18 1392-1396 hunflair:NA:Species denotes rice
M_19 35-51 hunflair:NA:Gene denotes methytransferase
M_20 802-818 hunflair:NA:Gene denotes methytransferase
M_21 293-303 hunflair:NA:Gene denotes Histone H3
M_22 11-19 hunflair:NA:Gene denotes GROUP701
M_23 573-593 hunflair:NA:Gene denotes SET DOMAIN GROUP 701
M_24 595-601 hunflair:NA:Gene denotes SDG701
M_25 785-791 hunflair:NA:Gene denotes SDG701
M_26 914-920 hunflair:NA:Gene denotes SDG701
M_27 1115-1121 hunflair:NA:Gene denotes SDG701
M_28 1213-1219 hunflair:NA:Gene denotes SDG701
M_29 1374-1380 hunflair:NA:Gene denotes SDG701
M_30 1313-1317 hunflair:NA:Gene denotes Hd3a
M_31 332-339 pubtator:MESH:C024755:Chemical denotes H3K4me2
M_32 471-478 pubtator:MESH:C024755:Chemical denotes H3K4me2
M_33 1267-1274 pubtator:MESH:C024755:Chemical denotes H3K4me3
M_34 1477-1484 pubtator:MESH:C024755:Chemical denotes H3K4me3
M_35 92-96 pubtator:4530:Species denotes rice
M_36 568-572 pubtator:4530:Species denotes rice
M_37 1036-1040 pubtator:4530:Species denotes rice
M_38 1131-1135 pubtator:4530:Species denotes rice
M_39 1308-1312 pubtator:4530:Species denotes rice
M_40 1392-1396 pubtator:4530:Species denotes rice
M_41 304-310 pubtator:MESH:C114808:Chemical denotes lysine

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 301-303 http://identifiers.org/oryzabase.gene/2976 denotes H3
T2 301-303 http://identifiers.org/oryzabase.gene/15776 denotes H3
T3 301-303 http://identifiers.org/oryzabase.gene/15720 denotes H3
T4 595-601 http://identifiers.org/oryzabase.gene/13391 denotes SDG701
T5 785-791 http://identifiers.org/oryzabase.gene/13391 denotes SDG701
T6 914-920 http://identifiers.org/oryzabase.gene/13391 denotes SDG701
T7 1115-1121 http://identifiers.org/oryzabase.gene/13391 denotes SDG701
T8 1213-1219 http://identifiers.org/oryzabase.gene/13391 denotes SDG701
T9 1313-1317 http://identifiers.org/oryzabase.gene/7216 denotes Hd3a
T10 1322-1326 http://identifiers.org/oryzabase.gene/9620 denotes RFT1
T11 1374-1380 http://identifiers.org/oryzabase.gene/13391 denotes SDG701
T93890 301-303 http://identifiers.org/rapdb.locus/Os06g0160001 denotes H3
T48606 301-303 http://identifiers.org/rapdb.locus/Os03g0727200 denotes H3
T91636 595-601 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SDG701
T27229 785-791 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SDG701
T15423 914-920 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SDG701
T22395 1115-1121 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SDG701
T6099 1213-1219 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SDG701
T53896 1313-1317 http://identifiers.org/rapdb.locus/Os06g0157700 denotes Hd3a
T94121 1322-1326 http://identifiers.org/rapdb.locus/Os06g0157500 denotes RFT1
T95695 1374-1380 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SDG701

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 293-303 http://identifiers.org/oryzabase.gene/17953 denotes Histone H3
T2 293-303 http://identifiers.org/oryzabase.gene/17631 denotes Histone H3
T3 293-303 http://identifiers.org/oryzabase.gene/15761 denotes Histone H3
T4 293-303 http://identifiers.org/oryzabase.gene/15720 denotes Histone H3

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 304-310 hunflair:NA:Chemical denotes lysine
M_1 595-601 hunflair:NA:Gene denotes SDG701
M_2 785-791 hunflair:NA:Gene denotes SDG701
M_3 914-920 hunflair:NA:Gene denotes SDG701
M_4 1115-1121 hunflair:NA:Gene denotes SDG701
M_5 1213-1219 hunflair:NA:Gene denotes SDG701
M_6 1374-1380 hunflair:NA:Gene denotes SDG701
M_7 1313-1317 hunflair:NA:Gene denotes Hd3a
M_8 11-19 hunflair:NA:Gene denotes GROUP701
M_9 30-51 hunflair:NA:Gene denotes H3K4-methytransferase
M_10 35-51 hunflair:NA:Gene denotes methytransferase
M_11 802-818 hunflair:NA:Gene denotes methytransferase
M_12 92-96 hunflair:NA:Species denotes rice
M_13 568-572 hunflair:NA:Species denotes rice
M_14 1036-1040 hunflair:NA:Species denotes rice
M_15 1131-1135 hunflair:NA:Species denotes rice
M_16 1308-1312 hunflair:NA:Species denotes rice
M_17 1392-1396 hunflair:NA:Species denotes rice
M_18 1322-1326 hunflair:NA:Gene denotes RFT1
M_19 573-593 hunflair:NA:Gene denotes SET DOMAIN GROUP 701
M_20 1397-1428 hunflair:NA:Gene denotes H3K4-specific methyltransferase
M_21 293-303 hunflair:NA:Gene denotes Histone H3

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 0-19 http://identifiers.org/oryzabase.gene/13391 denotes SET DOMAIN GROUP701
T2 293-303 http://identifiers.org/oryzabase.gene/17631 denotes Histone H3
T3 293-303 http://identifiers.org/oryzabase.gene/15720 denotes Histone H3
T4 573-593 http://identifiers.org/oryzabase.gene/13391 denotes SET DOMAIN GROUP 701
T5 595-601 http://identifiers.org/oryzabase.gene/13391 denotes SDG701
T6 785-791 http://identifiers.org/oryzabase.gene/13391 denotes SDG701
T7 914-920 http://identifiers.org/oryzabase.gene/13391 denotes SDG701
T8 1115-1121 http://identifiers.org/oryzabase.gene/13391 denotes SDG701
T9 1213-1219 http://identifiers.org/oryzabase.gene/13391 denotes SDG701
T10 1313-1317 http://identifiers.org/oryzabase.gene/7216 denotes Hd3a
T11 1322-1326 http://identifiers.org/oryzabase.gene/9620 denotes RFT1
T12 1374-1380 http://identifiers.org/oryzabase.gene/13391 denotes SDG701
T43526 0-19 http://identifiers.org/ricegap/LOC_Os08g08210 denotes SET DOMAIN GROUP701
T9259 293-303 http://identifiers.org/ricegap/LOC_Os06g04030 denotes Histone H3
T72744 573-593 http://identifiers.org/ricegap/LOC_Os08g08210 denotes SET DOMAIN GROUP 701
T10861 595-601 http://identifiers.org/ricegap/LOC_Os08g08210 denotes SDG701
T16627 785-791 http://identifiers.org/ricegap/LOC_Os08g08210 denotes SDG701
T11011 914-920 http://identifiers.org/ricegap/LOC_Os08g08210 denotes SDG701
T83759 1115-1121 http://identifiers.org/ricegap/LOC_Os08g08210 denotes SDG701
T37508 1213-1219 http://identifiers.org/ricegap/LOC_Os08g08210 denotes SDG701
T73220 1313-1317 http://identifiers.org/ricegap/LOC_Os06g06320 denotes Hd3a
T94125 1322-1326 http://identifiers.org/ricegap/LOC_Os06g06300 denotes RFT1
T81623 1374-1380 http://identifiers.org/ricegap/LOC_Os08g08210 denotes SDG701
T67970 0-19 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SET DOMAIN GROUP701
T19303 293-303 http://identifiers.org/rapdb.locus/Os06g0130900 denotes Histone H3
T68443 573-593 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SET DOMAIN GROUP 701
T62742 595-601 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SDG701
T14682 785-791 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SDG701
T83165 914-920 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SDG701
T85133 1115-1121 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SDG701
T65554 1213-1219 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SDG701
T8776 1313-1317 http://identifiers.org/rapdb.locus/Os06g0157700 denotes Hd3a
T74285 1322-1326 http://identifiers.org/rapdb.locus/Os06g0157500 denotes RFT1
T6921 1374-1380 http://identifiers.org/rapdb.locus/Os08g0180100 denotes SDG701
T73807 0-19 http://identifiers.org/refseq/XP_002870257.1 denotes SET DOMAIN GROUP701
T28858 293-303 http://identifiers.org/uniprot/D7SZ96 denotes Histone H3
T67864 573-593 http://identifiers.org/refseq/XP_002870257.1 denotes SET DOMAIN GROUP 701
T69018 595-601 http://identifiers.org/refseq/XP_002870257.1 denotes SDG701
T52990 785-791 http://identifiers.org/refseq/XP_002870257.1 denotes SDG701
T37335 914-920 http://identifiers.org/refseq/XP_002870257.1 denotes SDG701
T25619 1115-1121 http://identifiers.org/refseq/XP_002870257.1 denotes SDG701
T66360 1213-1219 http://identifiers.org/refseq/XP_002870257.1 denotes SDG701
T56657 1313-1317 http://identifiers.org/uniprot/Q93WM7 denotes Hd3a
T59717 1313-1317 http://identifiers.org/uniprot/Q93WI9 denotes Hd3a
T22075 1322-1326 http://identifiers.org/uniprot/Q8VWH2 denotes RFT1
T54154 1374-1380 http://identifiers.org/refseq/XP_002870257.1 denotes SDG701
M_0 304-310 hunflair:NA:Chemical denotes lysine
M_1 595-601 hunflair:NA:Gene denotes SDG701
M_2 785-791 hunflair:NA:Gene denotes SDG701
M_3 914-920 hunflair:NA:Gene denotes SDG701
M_4 1115-1121 hunflair:NA:Gene denotes SDG701
M_5 1213-1219 hunflair:NA:Gene denotes SDG701
M_6 1374-1380 hunflair:NA:Gene denotes SDG701
M_7 1313-1317 hunflair:NA:Gene denotes Hd3a
M_8 11-19 hunflair:NA:Gene denotes GROUP701
M_9 30-51 hunflair:NA:Gene denotes H3K4-methytransferase
M_10 35-51 hunflair:NA:Gene denotes methytransferase
M_11 802-818 hunflair:NA:Gene denotes methytransferase
M_12 92-96 hunflair:NA:Species denotes rice
M_13 568-572 hunflair:NA:Species denotes rice
M_14 1036-1040 hunflair:NA:Species denotes rice
M_15 1131-1135 hunflair:NA:Species denotes rice
M_16 1308-1312 hunflair:NA:Species denotes rice
M_17 1392-1396 hunflair:NA:Species denotes rice
M_18 1322-1326 hunflair:NA:Gene denotes RFT1
M_19 573-593 hunflair:NA:Gene denotes SET DOMAIN GROUP 701
M_20 1397-1428 hunflair:NA:Gene denotes H3K4-specific methyltransferase
M_21 293-303 hunflair:NA:Gene denotes Histone H3

funRiceGenes-all

Id Subject Object Predicate Lexical cue
PTO-all_T1 1086-1100 http://purl.obolibrary.org/obo/TO_0002616 denotes flowering time

OryzaGP

Id Subject Object Predicate Lexical cue
T1 301-303 gene denotes H3
T2 785-791 gene denotes SDG701
T3 914-920 gene denotes SDG701
T4 1213-1219 gene denotes SDG701
T5 1313-1317 gene denotes Hd3a
T6 1322-1326 gene denotes RFT1
T7 1374-1380 gene denotes SDG701