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PubMed:28487705 JSONTXT

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21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 1495-1509 TO:0000303, funRiceGene:81, xzyao:3220 denotes cold tolerance
M_1 165-171 funRiceGene:361 denotes stress
M_2 383-389 funRiceGene:361 denotes stress
M_3 1249-1255 funRiceGene:361 denotes stress
M_4 1403-1409 funRiceGene:361 denotes stress
M_5 298-307 funRiceGene:214 denotes tolerance
M_6 1080-1089 funRiceGene:214 denotes tolerance
M_7 1256-1265 funRiceGene:214 denotes tolerance
M_8 1500-1509 funRiceGene:214 denotes tolerance
M_9 620-625 WTO:0000006 denotes trait
M_10 677-682 WTO:0000006 denotes trait
M_11 1098-1103 WTO:0000006 denotes trait
M_12 289-297 funRiceGene:421 denotes chilling
M_13 1394-1402 funRiceGene:421 denotes chilling
M_14 1666-1674 funRiceGene:421 denotes chilling
M_15 1394-1409 funRiceGene:144, xzyao:10765 denotes chilling stress
M_16 175-183 PO:0008037, funRiceGene:218 denotes seedling
M_17 274-282 PO:0008037, funRiceGene:218 denotes seedling
M_18 1480-1488 PO:0008037, funRiceGene:218 denotes seedling
M_19 160-164 WTO:0000129, funRiceGene:509 denotes cold
M_20 1244-1248 WTO:0000129, funRiceGene:509 denotes cold
M_21 1495-1499 WTO:0000129, funRiceGene:509 denotes cold
M_22 371-389 xzyao:15579 denotes temperature stress
M_23 1244-1265 xzyao:17725 denotes cold stress tolerance
M_24 242-251 PECO:0007353 denotes germplasm
M_25 371-382 funRiceGene:161 denotes temperature
M_26 1249-1265 funRiceGene:287, xzyao:3567 denotes stress tolerance
M_27 160-171 funRiceGene:346, xzyao:1433 denotes cold stress
M_28 1244-1255 funRiceGene:346, xzyao:1433 denotes cold stress
M_29 1642-1653 WTO:0000011, funRiceGene:359 denotes development
M_30 121-132 hunflair:NA:Species denotes Indica Rice
M_31 311-322 hunflair:NA:Species denotes indica rice
M_32 121-132 pubtator:39946:Species denotes Indica Rice
M_33 128-132 pubtator:4530:Species denotes Rice
M_34 134-138 pubtator:4530:Species denotes Rice
M_35 1-2 pubtator:MESH:D002244:Chemical denotes e
M_36 1422-1423 pubtator:MESH:D002244:Chemical denotes C
M_37 311-322 pubtator:39946:Species denotes indica rice

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 1522-1527 http://identifiers.org/oryzabase.gene/21658 denotes qCTS9
T2 1553-1559 http://identifiers.org/oryzabase.gene/19528 denotes qSCT11
T53321 1522-1527 http://identifiers.org/rapdb.locus/Os09g0410300 denotes qCTS9
T56487 1553-1559 http://identifiers.org/rapdb.locus/Os11g0588100 denotes qSCT11

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 1495-1509 http://identifiers.org/oryzabase.gene/6368 denotes cold tolerance
T2 1495-1509 http://identifiers.org/oryzabase.gene/6367 denotes cold tolerance
T3 1495-1509 http://identifiers.org/oryzabase.gene/6366 denotes cold tolerance
T4 1495-1509 http://identifiers.org/oryzabase.gene/6365 denotes cold tolerance

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 87-95 PO:0008037, funRiceGene:218 denotes Seedling
M_1 175-183 PO:0008037, funRiceGene:218 denotes seedling
M_2 274-282 PO:0008037, funRiceGene:218 denotes seedling
M_3 1480-1488 PO:0008037, funRiceGene:218 denotes seedling
M_4 367-382 xzyao:7261 denotes low temperature
M_5 1249-1265 funRiceGene:287, xzyao:3037 denotes stress tolerance
M_6 1642-1653 WTO:0000011, funRiceGene:359 denotes development
M_7 567-587 xzyao:13844 denotes population structure
M_8 102-117 funRiceGene:144, xzyao:17175 denotes Chilling Stress
M_9 1394-1409 funRiceGene:144, xzyao:17175 denotes chilling stress
M_10 160-171 funRiceGene:346, xzyao:15326 denotes cold stress
M_11 1244-1255 funRiceGene:346, xzyao:15326 denotes cold stress
M_12 371-389 xzyao:628 denotes temperature stress
M_13 548-565 xzyao:12780 denotes genetic diversity
M_14 719-736 xzyao:12780 denotes genetic diversity
M_15 242-251 PECO:0007353 denotes germplasm
M_16 160-164 WTO:0000129, funRiceGene:509 denotes cold
M_17 1244-1248 WTO:0000129, funRiceGene:509 denotes cold
M_18 1495-1499 WTO:0000129, funRiceGene:509 denotes cold
M_19 371-382 funRiceGene:161 denotes temperature
M_20 1675-1691 xzyao:11659 denotes tolerant variety
M_21 111-117 funRiceGene:361 denotes Stress
M_22 165-171 funRiceGene:361 denotes stress
M_23 383-389 funRiceGene:361 denotes stress
M_24 1249-1255 funRiceGene:361 denotes stress
M_25 1403-1409 funRiceGene:361 denotes stress
M_26 620-625 WTO:0000006 denotes trait
M_27 677-682 WTO:0000006 denotes trait
M_28 782-787 WTO:0000006 denotes trait
M_29 1098-1103 WTO:0000006 denotes trait
M_30 1333-1338 WTO:0000006 denotes trait
M_31 121-132 xzyao:1235 denotes Indica Rice
M_32 311-322 xzyao:1235 denotes indica rice
M_33 1430-1437 xzyao:44007 denotes 21 days
M_34 1046-1064 xzyao:21743 denotes STRUCTURE analysis
M_35 1244-1265 xzyao:41940 denotes cold stress tolerance
M_36 64-73 funRiceGene:214 denotes Tolerance
M_37 298-307 funRiceGene:214 denotes tolerance
M_38 1080-1089 funRiceGene:214 denotes tolerance
M_39 1256-1265 funRiceGene:214 denotes tolerance
M_40 1500-1509 funRiceGene:214 denotes tolerance
M_41 1495-1509 TO:0000303, funRiceGene:81, xzyao:22726 denotes cold tolerance
M_42 102-110 funRiceGene:421 denotes Chilling
M_43 289-297 funRiceGene:421 denotes chilling
M_44 1394-1402 funRiceGene:421 denotes chilling
M_45 1666-1674 funRiceGene:421 denotes chilling
M_46 289-307 xzyao:25078 denotes chilling tolerance
M_47 121-132 hunflair:NA:Species denotes Indica Rice
M_48 311-322 hunflair:NA:Species denotes indica rice
M_49 311-322 pubtator:39946:Species denotes indica rice
M_50 1-2 pubtator:MESH:D002244:Chemical denotes e
M_51 1422-1423 pubtator:MESH:D002244:Chemical denotes C
M_52 128-132 pubtator:4530:Species denotes Rice
M_53 134-138 pubtator:4530:Species denotes Rice
M_54 121-132 pubtator:39946:Species denotes Indica Rice

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 121-132 hunflair:NA:Species denotes Indica Rice
M_1 311-322 hunflair:NA:Species denotes indica rice

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 1495-1509 http://identifiers.org/oryzabase.gene/6368 denotes cold tolerance
T2 1495-1509 http://identifiers.org/oryzabase.gene/6367 denotes cold tolerance
T3 1495-1509 http://identifiers.org/oryzabase.gene/6366 denotes cold tolerance
T4 1495-1509 http://identifiers.org/oryzabase.gene/6365 denotes cold tolerance
T5 1553-1559 http://identifiers.org/oryzabase.gene/19528 denotes qSCT11
T58619 1522-1527 http://identifiers.org/ricegap/LOC_Os09g24440 denotes qCTS9
T51207 1553-1559 http://identifiers.org/ricegap/LOC_Os11g37720 denotes qSCT11
T82948 1522-1527 http://identifiers.org/rapdb.locus/Os09g0410300 denotes qCTS9
T82543 1553-1559 http://identifiers.org/rapdb.locus/Os11g0588100 denotes qSCT11
T46943 1553-1559 http://identifiers.org/uniprot/Q2R1X7 denotes qSCT11
M_0 121-132 hunflair:NA:Species denotes Indica Rice
M_1 311-322 hunflair:NA:Species denotes indica rice

funRiceGenes-all

Id Subject Object Predicate Lexical cue
PTO-all_T1 1022-1025 http://purl.obolibrary.org/obo/TO_0000286 denotes sub
PTO-all_T2 1143-1146 http://purl.obolibrary.org/obo/TO_0000286 denotes sub
PTO-all_T3 1249-1265 http://purl.obolibrary.org/obo/TO_0000164 denotes stress tolerance
PTO-all_T4 1495-1509 http://purl.obolibrary.org/obo/TO_0000303 denotes cold tolerance

funRiceGenes-exact

Id Subject Object Predicate Lexical cue
PTO-exact_T1 1495-1509 http://purl.obolibrary.org/obo/TO_0000303 denotes cold tolerance

OryzaGP

Id Subject Object Predicate Lexical cue
T1 1224-1265 gene denotes ce of many QTLs for cold stress tolerance

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-133 Sentence denotes Genome-Wide Association Mapping Reveals Multiple QTLs Governing Tolerance Response for Seedling Stage Chilling Stress in Indica Rice.
T2 134-190 Sentence denotes Rice crop is sensitive to cold stress at seedling stage.
T3 191-323 Sentence denotes A panel of population representing 304 shortlisted germplasm lines was studied for seedling stage chilling tolerance in indica rice.
T4 324-465 Sentence denotes Six phenotypic classes were exposed to six low temperature stress regimes under control phenotyping facility to investigate response pattern.
T5 466-698 Sentence denotes A panel of 66 genotypes representing all phenotypic classes was used for ensuring genetic diversity, population structure and association mapping for the trait using 58 simple sequence repeat (SSR) and 2 direct trait linked markers.
T6 699-788 Sentence denotes A moderate level of genetic diversity was detected in the panel population for the trait.
T7 789-897 Sentence denotes Deviation of Hardy-Weinberg's expectation was detected in the studied population using Wright's F statistic.
T8 898-972 Sentence denotes The panel showed 30% variation among population and 70% among individuals.
T9 973-1065 Sentence denotes The entire population was categorized into three sub-populations through STRUCTURE analysis.
T10 1066-1185 Sentence denotes This revealed tolerance for the trait had a common primary ancestor for each sub-population with few admix individuals.
T11 1186-1339 Sentence denotes The panel population showed the presence of many QTLs for cold stress tolerance in the individuals representing like genome-wide expression of the trait.
T12 1340-1447 Sentence denotes Nineteen SSR markers were significantly associated at chilling stress of 8°C to 4°C for 7-21 days duration.
T13 1448-1692 Sentence denotes Thus, the primers linked to the seedling stage cold tolerance QTLs namely qCTS9, qCTS-2, qCTS6.1, qSCT2, qSCT11, qSCT1a, qCTS-3.1, qCTS11.1, qCTS12.1, qCTS-1b, and CTB2 need to be pyramided for development of strongly chilling tolerant variety.