> top > docs > PubMed:28326091 > annotations

PubMed:28326091 JSONTXT

Annnotations TAB JSON ListView MergeView

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 1293-1315 cand:WTO:0000224-flour mechanical property denotes nutritional properties
M_1 1293-1315 cand:funRiceGene:220-nutritional quality denotes nutritional properties
M_2 1293-1315 cand:TO:0000489-carbohydrate composition related trait denotes nutritional properties
M_3 1293-1315 cand:WTO:0000223-flour composition denotes nutritional properties
M_4 1293-1315 cand:WTO:0000162-micronutrient use efficiency denotes nutritional properties
M_5 1293-1315 cand:WTO:0000159-macronutrient use efficiency denotes nutritional properties
M_6 1293-1315 cand:funRiceGene:481-actin protein denotes nutritional properties
M_7 1293-1315 cand:PO:0008007-nucellar projection denotes nutritional properties
M_8 1293-1315 cand:TO:0000890-seed coat proportion denotes nutritional properties
M_9 1293-1315 cand:WTO:0000109-soil property denotes nutritional properties
M_10 1100-1117 cand:TO:0000613-groat percentage denotes higher proportion
M_11 1100-1117 cand:PPO:0000003-lower percent denotes higher proportion
M_12 1100-1117 cand:TO:0000570-watery lesion percentage denotes higher proportion
M_13 1100-1117 cand:WTO:0000173-percentage of florets without grain denotes higher proportion
M_14 1100-1117 cand:TO:0000725-megasporocyte number denotes higher proportion
M_15 1100-1117 cand:PPO:0000001-lower count denotes higher proportion
M_16 1100-1117 cand:PO:0004706-flower primordium denotes higher proportion
M_17 1100-1117 cand:TO:0000890-seed coat proportion denotes higher proportion
M_18 1100-1117 cand:funRiceGene:210-HIGHER YIELD RICE denotes higher proportion
M_19 1100-1117 cand:PO:0006089-anther primordium denotes higher proportion
M_20 1100-1117 cand:WTO:0000049-reproduction denotes higher proportion
M_21 1413-1430 cand:TO:0000372-amylose to amylopectin ratio denotes high-amylose rice
M_22 1413-1430 cand:TO:0002655-starch grain size denotes high-amylose rice
M_23 1413-1430 cand:TO:0000098-glutinous endosperm denotes high-amylose rice
M_24 1413-1430 cand:TO:0000144-milled rice yield denotes high-amylose rice
M_25 1413-1430 cand:WTO:0000149-grain starch content denotes high-amylose rice
M_26 1413-1430 cand:TO:0002658-starch grain synthesis denotes high-amylose rice
M_27 1413-1430 cand:funRiceGene:100-heat tolerance denotes high-amylose rice
M_28 1413-1430 cand:PECO:0007196-light exposure denotes high-amylose rice
M_29 1413-1430 cand:PO:0030018-gametophore denotes high-amylose rice
M_30 1413-1430 cand:PO:0025141-phyllome tip denotes high-amylose rice
M_31 1413-1430 cand:funRiceGene:210-HIGHER YIELD RICE denotes high-amylose rice
M_32 1194-1211 cand:TO:0000696-starch content denotes AC and RS content
M_33 1194-1211 cand:TO:0000993-cellulose content denotes AC and RS content
M_34 1194-1211 cand:WTO:0000164-moisture content of the grain denotes AC and RS content
M_35 1194-1211 cand:TO:1000063-shoot system magnesium content denotes AC and RS content
M_36 1194-1211 cand:WTO:0000025-high grain protein content denotes AC and RS content
M_37 1194-1211 cand:TO:0000602-total fat content denotes AC and RS content
M_38 1194-1211 cand:TO:0020091-manganese content denotes AC and RS content
M_39 1194-1211 cand:TO:0000955-cyanide content denotes AC and RS content
M_40 1194-1211 cand:TO:0000932-mannose content denotes AC and RS content
M_41 1194-1211 cand:TO:0000466-carbon content denotes AC and RS content
M_42 1194-1211 cand:TO:0000333-sugar content denotes AC and RS content
M_43 1079-1084 GeneID:NA denotes sbeII
M_44 1471-1477 GeneID:RAPID:Os02g0528200MSUID:LOC_Os02g32660GraID:GR:0060839 denotes SBEIIb
M_45 1051-1055 GeneID:NA denotes sbeI
M_46 1079-1083 GeneID:NA denotes sbeI
T91389 152-161 funRiceGene:269 denotes resistant
T35372 1293-1315 xzyao:44798 denotes nutritional properties
T79842 85-109 xzyao:17013 denotes Starch Branching Enzymes
T84812 301-317 xzyao:2611 denotes branching enzyme
T16205 1100-1117 xzyao:23774 denotes higher proportion
T9369 230-250 xzyao:30463 denotes chemical mutagenesis
T80324 1261-1288 xzyao:28204 denotes thus altered fine structure
T369 127-142 TO:0000196, xzyao:37574 denotes amylose content
T67159 230-238 WTO:0000069 denotes chemical
T76988 381-400 xzyao:623 denotes physical properties
T85531 254-270 xzyao:33663 denotes RNA interference
T99366 85-91 funRiceGene:143 denotes Starch
T25488 162-168 funRiceGene:143 denotes starch
T59984 294-300 funRiceGene:143 denotes starch
T96252 404-410 funRiceGene:143 denotes starch
T25564 455-461 funRiceGene:143 denotes starch
T37865 1319-1325 funRiceGene:143 denotes starch
T94219 92-101 funRiceGene:525 denotes Branching
T24267 301-310 funRiceGene:525 denotes branching
T10399 462-471 funRiceGene:525 denotes branching
T71543 1201-1211 xzyao:19829 denotes RS content
T39447 294-317 xzyao:3088 denotes starch branching enzyme
T41144 111-118 hunflair:NA:Species denotes Cereals
T82624 565-569 hunflair:NA:Gene denotes SBEI
T51333 671-675 hunflair:NA:Gene denotes SBEI
T98959 40-46 hunflair:NA:Gene denotes CRISPR
T62308 506-512 hunflair:NA:Gene denotes CRISPR
T35967 1439-1445 hunflair:NA:Gene denotes CRISPR
T45001 744-763 hunflair:NA:CellLine denotes homozygous T0 lines
T99001 1079-1084 hunflair:NA:Gene denotes sbeII
T29306 319-322 hunflair:NA:Gene denotes SBE
T2418 1051-1055 hunflair:NA:Gene denotes sbeI
T55736 47-60 hunflair:NA:Gene denotes Cas9-Mediated
T57229 27-31 hunflair:NA:Species denotes Rice
T46822 574-580 hunflair:NA:Gene denotes SBEIIb
T61656 680-686 hunflair:NA:Gene denotes SBEIIb
T73684 1471-1477 hunflair:NA:Gene denotes SBEIIb
T53438 1446-1459 hunflair:NA:Gene denotes Cas9-mediated
T50990 821-837 hunflair:NA:CellLine denotes bi-allelic lines
T26689 584-588 hunflair:NA:Species denotes rice
T1120 1426-1430 hunflair:NA:Species denotes rice
T14751 294-317 hunflair:NA:Gene denotes starch branching enzyme
T29034 584-588 pubtator:4530:Species denotes rice
T7013 1426-1430 pubtator:4530:Species denotes rice
T39075 27-31 pubtator:4530:Species denotes Rice
T1547 85-101 pubtator:MESH:D015356:Disease denotes Starch Branching

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 230-238 WTO:0000069 denotes chemical
M_1 162-168 funRiceGene:143 denotes starch
M_2 294-300 funRiceGene:143 denotes starch
M_3 455-461 funRiceGene:143 denotes starch
M_4 127-142 xzyao:2145 denotes amylose content
M_5 301-310 funRiceGene:525 denotes branching
M_6 462-471 funRiceGene:525 denotes branching
M_7 152-161 funRiceGene:269 denotes resistant
M_8 127-142 TO:0000196, xzyao:11214 denotes amylose content
M_9 319-322 hunflair:NA:Gene denotes SBE
M_10 1051-1055 hunflair:NA:Gene denotes sbeI
M_11 294-317 hunflair:NA:Gene denotes starch branching enzyme
M_12 821-837 hunflair:NA:CellLine denotes bi-allelic lines
M_13 744-763 hunflair:NA:CellLine denotes homozygous T0 lines
M_14 47-60 hunflair:NA:Gene denotes Cas9-Mediated
M_15 584-588 hunflair:NA:Species denotes rice
M_16 1426-1430 hunflair:NA:Species denotes rice
M_17 1079-1084 hunflair:NA:Gene denotes sbeII
M_18 111-118 hunflair:NA:Species denotes Cereals
M_19 40-46 hunflair:NA:Gene denotes CRISPR
M_20 506-512 hunflair:NA:Gene denotes CRISPR
M_21 1439-1445 hunflair:NA:Gene denotes CRISPR
M_22 27-31 hunflair:NA:Species denotes Rice
M_23 1446-1459 hunflair:NA:Gene denotes Cas9-mediated
M_24 565-569 hunflair:NA:Gene denotes SBEI
M_25 671-675 hunflair:NA:Gene denotes SBEI
M_26 574-580 hunflair:NA:Gene denotes SBEIIb
M_27 680-686 hunflair:NA:Gene denotes SBEIIb
M_28 1471-1477 hunflair:NA:Gene denotes SBEIIb
M_29 85-101 pubtator:MESH:D015356:Disease denotes Starch Branching
M_30 27-31 pubtator:4530:Species denotes Rice
M_31 584-588 pubtator:4530:Species denotes rice
M_32 1426-1430 pubtator:4530:Species denotes rice

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 14-26 http://identifiers.org/oryzabase.gene/25 denotes High-Amylose
T2 1413-1425 http://identifiers.org/oryzabase.gene/25 denotes high-amylose

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 565-569 http://identifiers.org/oryzabase.gene/730 denotes SBEI
T2 574-580 http://identifiers.org/oryzabase.gene/503 denotes SBEIIb
T3 671-675 http://identifiers.org/oryzabase.gene/730 denotes SBEI
T4 680-686 http://identifiers.org/oryzabase.gene/503 denotes SBEIIb
T5 1471-1477 http://identifiers.org/oryzabase.gene/503 denotes SBEIIb
T23264 565-569 http://identifiers.org/rapdb.locus/Os06g0726400 denotes SBEI
T5986 574-580 http://identifiers.org/rapdb.locus/Os02g0528200 denotes SBEIIb
T3640 671-675 http://identifiers.org/rapdb.locus/Os06g0726400 denotes SBEI
T11240 680-686 http://identifiers.org/rapdb.locus/Os02g0528200 denotes SBEIIb
T77547 1471-1477 http://identifiers.org/rapdb.locus/Os02g0528200 denotes SBEIIb

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 744-763 hunflair:NA:CellLine denotes homozygous T0 lines
M_1 1079-1084 hunflair:NA:Gene denotes sbeII
M_2 27-31 hunflair:NA:Species denotes Rice
M_3 821-837 hunflair:NA:CellLine denotes bi-allelic lines
M_4 47-60 hunflair:NA:Gene denotes Cas9-Mediated
M_5 1051-1055 hunflair:NA:Gene denotes sbeI
M_6 565-569 hunflair:NA:Gene denotes SBEI
M_7 671-675 hunflair:NA:Gene denotes SBEI
M_8 584-588 hunflair:NA:Species denotes rice
M_9 1426-1430 hunflair:NA:Species denotes rice
M_10 319-322 hunflair:NA:Gene denotes SBE
M_11 40-46 hunflair:NA:Gene denotes CRISPR
M_12 506-512 hunflair:NA:Gene denotes CRISPR
M_13 1439-1445 hunflair:NA:Gene denotes CRISPR
M_14 294-317 hunflair:NA:Gene denotes starch branching enzyme
M_15 111-118 hunflair:NA:Species denotes Cereals
M_16 1446-1459 hunflair:NA:Gene denotes Cas9-mediated
M_17 574-580 hunflair:NA:Gene denotes SBEIIb
M_18 680-686 hunflair:NA:Gene denotes SBEIIb
M_19 1471-1477 hunflair:NA:Gene denotes SBEIIb

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 574-580 http://identifiers.org/oryzabase.gene/503 denotes SBEIIb
T2 680-686 http://identifiers.org/oryzabase.gene/503 denotes SBEIIb
T3 1471-1477 http://identifiers.org/oryzabase.gene/503 denotes SBEIIb
T95648 565-569 http://identifiers.org/ricegap/LOC_Os06g51084 denotes SBEI
T48868 574-580 http://identifiers.org/ricegap/LOC_Os02g32660 denotes SBEIIb
T6102 671-675 http://identifiers.org/ricegap/LOC_Os06g51084 denotes SBEI
T4 680-686 http://identifiers.org/ricegap/LOC_Os02g32660 denotes SBEIIb
T5 1051-1055 http://identifiers.org/ricegap/LOC_Os06g51084 denotes sbeI
T6 1471-1477 http://identifiers.org/ricegap/LOC_Os02g32660 denotes SBEIIb
T356 565-569 http://identifiers.org/rapdb.locus/Os06g0726400 denotes SBEI
T57291 574-580 http://identifiers.org/rapdb.locus/Os02g0528200 denotes SBEIIb
T38792 671-675 http://identifiers.org/rapdb.locus/Os06g0726400 denotes SBEI
T21898 680-686 http://identifiers.org/rapdb.locus/Os02g0528200 denotes SBEIIb
T84220 1051-1055 http://identifiers.org/rapdb.locus/Os06g0726400 denotes sbeI
T12050 1471-1477 http://identifiers.org/rapdb.locus/Os02g0528200 denotes SBEIIb
T55540 574-580 http://identifiers.org/uniprot/Q6H6P8 denotes SBEIIb
T39790 680-686 http://identifiers.org/uniprot/Q6H6P8 denotes SBEIIb
T47025 1471-1477 http://identifiers.org/uniprot/Q6H6P8 denotes SBEIIb
M_0 744-763 hunflair:NA:CellLine denotes homozygous T0 lines
M_1 1079-1084 hunflair:NA:Gene denotes sbeII
M_2 27-31 hunflair:NA:Species denotes Rice
M_3 821-837 hunflair:NA:CellLine denotes bi-allelic lines
M_4 47-60 hunflair:NA:Gene denotes Cas9-Mediated
M_5 1051-1055 hunflair:NA:Gene denotes sbeI
M_6 565-569 hunflair:NA:Gene denotes SBEI
M_7 671-675 hunflair:NA:Gene denotes SBEI
M_8 584-588 hunflair:NA:Species denotes rice
M_9 1426-1430 hunflair:NA:Species denotes rice
M_10 319-322 hunflair:NA:Gene denotes SBE
M_11 40-46 hunflair:NA:Gene denotes CRISPR
M_12 506-512 hunflair:NA:Gene denotes CRISPR
M_13 1439-1445 hunflair:NA:Gene denotes CRISPR
M_14 294-317 hunflair:NA:Gene denotes starch branching enzyme
M_15 111-118 hunflair:NA:Species denotes Cereals
M_16 1446-1459 hunflair:NA:Gene denotes Cas9-mediated
M_17 574-580 hunflair:NA:Gene denotes SBEIIb
M_18 680-686 hunflair:NA:Gene denotes SBEIIb
M_19 1471-1477 hunflair:NA:Gene denotes SBEIIb

funRiceGenes-all

Id Subject Object Predicate Lexical cue
PTO-all_T1 85-91 http://purl.obolibrary.org/obo/TO_0000698 denotes Starch
PTO-all_T2 127-142 http://purl.obolibrary.org/obo/TO_0000196 denotes amylose content
PTO-all_T3 144-146 http://purl.obolibrary.org/obo/TO_0000294 denotes AC
PTO-all_T4 162-168 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T5 294-300 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T6 404-410 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T7 455-461 http://purl.obolibrary.org/obo/TO_0000698 denotes starch
PTO-all_T8 1194-1196 http://purl.obolibrary.org/obo/TO_0000294 denotes AC
PTO-all_T9 1319-1325 http://purl.obolibrary.org/obo/TO_0000698 denotes starch

funRiceGenes-exact

Id Subject Object Predicate Lexical cue
PTO-exact_T1 127-142 http://purl.obolibrary.org/obo/TO_0000196 denotes amylose content

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-110 Sentence denotes Generation of High-Amylose Rice through CRISPR/Cas9-Mediated Targeted Mutagenesis of Starch Branching Enzymes.
T2 111-206 Sentence denotes Cereals high in amylose content (AC) and resistant starch (RS) offer potential health benefits.
T3 207-411 Sentence denotes Previous studies using chemical mutagenesis or RNA interference have demonstrated that starch branching enzyme (SBE) plays a major role in determining the fine structure and physical properties of starch.
T4 412-492 Sentence denotes However, it remains a challenge to control starch branching in commercial lines.
T5 493-589 Sentence denotes Here, we use CRISPR/Cas9 technology to generate targeted mutagenesis in SBEI and SBEIIb in rice.
T6 590-726 Sentence denotes The frequencies of obtained homozygous or bi-allelic mutant lines with indels in SBEI and SBEIIb in T0 generation were from 26.7 to 40%.
T7 727-872 Sentence denotes Mutations in the homozygous T0 lines stably transmitted to the T1 generation and those in the bi-allelic lines segregated in a Mendelian fashion.
T8 873-993 Sentence denotes Transgene-free plants carrying only the frame-shifted mutagenesis were recovered in T1 generation following segregation.
T9 994-1326 Sentence denotes Whereas no obvious differences were observed between the sbeI mutants and wild type, sbeII mutants showed higher proportion of long chains presented in debranched amylopectin, significantly increased AC and RS content to as higher as 25.0 and 9.8%, respectively, and thus altered fine structure and nutritional properties of starch.
T10 1327-1478 Sentence denotes Taken together, our results demonstrated for the first time the feasibility to create high-amylose rice through CRISPR/Cas9-mediated editing of SBEIIb.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-110 Sentence denotes Generation of High-Amylose Rice through CRISPR/Cas9-Mediated Targeted Mutagenesis of Starch Branching Enzymes.
T2 111-206 Sentence denotes Cereals high in amylose content (AC) and resistant starch (RS) offer potential health benefits.
T3 207-411 Sentence denotes Previous studies using chemical mutagenesis or RNA interference have demonstrated that starch branching enzyme (SBE) plays a major role in determining the fine structure and physical properties of starch.
T4 412-492 Sentence denotes However, it remains a challenge to control starch branching in commercial lines.
T5 493-589 Sentence denotes Here, we use CRISPR/Cas9 technology to generate targeted mutagenesis in SBEI and SBEIIb in rice.
T6 590-726 Sentence denotes The frequencies of obtained homozygous or bi-allelic mutant lines with indels in SBEI and SBEIIb in T0 generation were from 26.7 to 40%.
T7 727-872 Sentence denotes Mutations in the homozygous T0 lines stably transmitted to the T1 generation and those in the bi-allelic lines segregated in a Mendelian fashion.
T8 873-993 Sentence denotes Transgene-free plants carrying only the frame-shifted mutagenesis were recovered in T1 generation following segregation.
T9 994-1326 Sentence denotes Whereas no obvious differences were observed between the sbeI mutants and wild type, sbeII mutants showed higher proportion of long chains presented in debranched amylopectin, significantly increased AC and RS content to as higher as 25.0 and 9.8%, respectively, and thus altered fine structure and nutritional properties of starch.
T10 1327-1478 Sentence denotes Taken together, our results demonstrated for the first time the feasibility to create high-amylose rice through CRISPR/Cas9-mediated editing of SBEIIb.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-110 Sentence denotes Generation of High-Amylose Rice through CRISPR/Cas9-Mediated Targeted Mutagenesis of Starch Branching Enzymes.
T2 111-206 Sentence denotes Cereals high in amylose content (AC) and resistant starch (RS) offer potential health benefits.
T3 207-411 Sentence denotes Previous studies using chemical mutagenesis or RNA interference have demonstrated that starch branching enzyme (SBE) plays a major role in determining the fine structure and physical properties of starch.
T4 412-492 Sentence denotes However, it remains a challenge to control starch branching in commercial lines.
T5 493-589 Sentence denotes Here, we use CRISPR/Cas9 technology to generate targeted mutagenesis in SBEI and SBEIIb in rice.
T6 590-726 Sentence denotes The frequencies of obtained homozygous or bi-allelic mutant lines with indels in SBEI and SBEIIb in T0 generation were from 26.7 to 40%.
T7 727-872 Sentence denotes Mutations in the homozygous T0 lines stably transmitted to the T1 generation and those in the bi-allelic lines segregated in a Mendelian fashion.
T8 873-993 Sentence denotes Transgene-free plants carrying only the frame-shifted mutagenesis were recovered in T1 generation following segregation.
T9 994-1326 Sentence denotes Whereas no obvious differences were observed between the sbeI mutants and wild type, sbeII mutants showed higher proportion of long chains presented in debranched amylopectin, significantly increased AC and RS content to as higher as 25.0 and 9.8%, respectively, and thus altered fine structure and nutritional properties of starch.
T10 1327-1478 Sentence denotes Taken together, our results demonstrated for the first time the feasibility to create high-amylose rice through CRISPR/Cas9-mediated editing of SBEIIb.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-110 Sentence denotes Generation of High-Amylose Rice through CRISPR/Cas9-Mediated Targeted Mutagenesis of Starch Branching Enzymes.
T2 111-206 Sentence denotes Cereals high in amylose content (AC) and resistant starch (RS) offer potential health benefits.
T3 207-411 Sentence denotes Previous studies using chemical mutagenesis or RNA interference have demonstrated that starch branching enzyme (SBE) plays a major role in determining the fine structure and physical properties of starch.
T4 412-492 Sentence denotes However, it remains a challenge to control starch branching in commercial lines.
T5 493-589 Sentence denotes Here, we use CRISPR/Cas9 technology to generate targeted mutagenesis in SBEI and SBEIIb in rice.
T6 590-726 Sentence denotes The frequencies of obtained homozygous or bi-allelic mutant lines with indels in SBEI and SBEIIb in T0 generation were from 26.7 to 40%.
T7 727-872 Sentence denotes Mutations in the homozygous T0 lines stably transmitted to the T1 generation and those in the bi-allelic lines segregated in a Mendelian fashion.
T8 873-993 Sentence denotes Transgene-free plants carrying only the frame-shifted mutagenesis were recovered in T1 generation following segregation.
T9 994-1326 Sentence denotes Whereas no obvious differences were observed between the sbeI mutants and wild type, sbeII mutants showed higher proportion of long chains presented in debranched amylopectin, significantly increased AC and RS content to as higher as 25.0 and 9.8%, respectively, and thus altered fine structure and nutritional properties of starch.
T10 1327-1478 Sentence denotes Taken together, our results demonstrated for the first time the feasibility to create high-amylose rice through CRISPR/Cas9-mediated editing of SBEIIb.