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PubMed:28273846 JSONTXT

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GoldHamster

Id Subject Object Predicate Lexical cue
T1 63-76 PR:000014773 denotes 6-kDa Protein
T2 63-76 P15285 denotes 6-kDa Protein
T3 63-76 Q08542 denotes 6-kDa Protein
T4 63-76 P17129 denotes 6-kDa Protein
T5 63-76 P07988 denotes 6-kDa Protein
T6 63-76 P15781 denotes 6-kDa Protein
T7 69-76 CHEBI:16541 denotes Protein
T8 80-99 79923 denotes Clonorchis sinensis
T9 80-99 D003004 denotes Clonorchis sinensis
T10 137-145 UBERON:0002199 denotes tegument
T11 164-172 UBERON:0000094 denotes membrane
T13 164-172 UBERON:0000158 denotes membrane
T12 164-172 GO:0016020 denotes membrane
T14 196-209 D010986 denotes platyhelminth
T15 210-219 D010271 denotes parasites
T16 253-263 GO:0065007 denotes regulation
T17 276-291 GO:0006955 denotes immune response
T18 296-304 D010271 denotes parasite
T19 359-367 CHEBI:36080 denotes proteins
T20 380-384 CHEBI:23888 denotes drug
T21 412-420 D006376 denotes helminth
T22 450-463 D003003 denotes clonorchiasis
T23 450-463 D003003 denotes clonorchiasis
T24 478-483 UBERON:0002107 denotes liver
T25 478-489 D005210 denotes liver fluke
T26 478-489 6192 denotes liver fluke
T28 484-489 P15286 denotes fluke
T30 484-489 Q7CQ37 denotes fluke
T27 484-489 UBERON:0013131 denotes fluke
T31 490-509 79923 denotes Clonorchis sinensis
T32 490-509 D003004 denotes Clonorchis sinensis
T36 646-653 PR:000000001 denotes protein
T34 646-653 CHEBI:36080 denotes protein
T35 646-653 CHEBI:11122 denotes protein
T37 646-653 SO:0000104 denotes protein
T33 646-653 GO:0003675 denotes protein
T38 673-678 UBERON:0007023 denotes adult
T39 779-794 SO:0000316 denotes coding sequence
T42 822-826 D018076 denotes cDNA
T41 822-826 SO:0000756 denotes cDNA
T43 848-855 GO:0003675 denotes protein
T44 848-855 CHEBI:36080 denotes protein
T45 848-855 CHEBI:11122 denotes protein
T46 848-855 PR:000000001 denotes protein
T47 848-855 SO:0000104 denotes protein
T49 863-874 CHEBI:33704 denotes amino acids
T50 863-874 D000596 denotes amino acids
T51 863-874 D000596 denotes amino acids
T53 863-874 CHEBI:33709 denotes amino acids
T52 863-874 1873122 denotes amino acids
T55 989-997 CHEBI:36080 denotes proteins
T56 1058-1065 1895 denotes calcium
T57 1058-1065 CHEBI:29320 denotes calcium
T58 1058-1065 CHEBI:22984 denotes calcium
T59 1066-1073 SO:0100018 denotes binding
T60 1066-1073 SO:0001091 denotes binding
T61 1066-1073 GO:0005488 denotes binding
T62 1082-1088 SO:0000417 denotes domain
T63 1108-1113 SO:0001117 denotes helix
T65 1108-1113 SO:0001116 denotes helix
T66 1108-1113 SO:0001114 denotes helix
T67 1108-1113 6535 denotes helix
T68 1108-1113 145123 denotes helix
T64 1108-1113 UBERON:0002488 denotes helix
T69 1119-1124 SO:0001117 denotes helix
T71 1119-1124 SO:0001116 denotes helix
T72 1119-1124 SO:0001114 denotes helix
T73 1119-1124 6535 denotes helix
T74 1119-1124 145123 denotes helix
T70 1119-1124 UBERON:0002488 denotes helix
T75 1141-1147 D004398 denotes dynein
T76 1141-1147 GO:0003777 denotes dynein
T77 1141-1159 Q94758 denotes dynein light chain
T78 1141-1159 PR:000002201 denotes dynein light chain
T79 1154-1159 SO:0000419 denotes chain
T80 1160-1166 SO:0000417 denotes domain
T81 1180-1190 P03941 denotes ferredoxin
T82 1180-1190 P83527 denotes ferredoxin
T83 1180-1190 P68164 denotes ferredoxin
T84 1180-1190 O78510 denotes ferredoxin
T85 1180-1190 P83525 denotes ferredoxin
T86 1180-1190 P00226 denotes ferredoxin
T87 1180-1190 P00202 denotes ferredoxin
T88 1180-1190 P09735 denotes ferredoxin
T89 1180-1190 P10770 denotes ferredoxin
T91 1180-1190 P81901 denotes ferredoxin
T92 1180-1190 P00223 denotes ferredoxin
T93 1180-1190 Q92G41 denotes ferredoxin
T94 1180-1190 P00248 denotes ferredoxin
T95 1180-1190 P83585 denotes ferredoxin
T96 1180-1190 P49522 denotes ferredoxin
T97 1180-1190 P00255 denotes ferredoxin
T98 1180-1190 P00222 denotes ferredoxin
T99 1180-1190 P46797 denotes ferredoxin
T100 1180-1190 P15789 denotes ferredoxin
T101 1180-1190 P00198 denotes ferredoxin
T102 1180-1190 P00212 denotes ferredoxin
T103 1180-1190 P03942 denotes ferredoxin
T104 1180-1190 P21305 denotes ferredoxin
T105 1180-1190 P00208 denotes ferredoxin
T106 1180-1190 P83582 denotes ferredoxin
T107 1180-1190 P00203 denotes ferredoxin
T108 1180-1190 P00238 denotes ferredoxin
T109 1180-1190 P00201 denotes ferredoxin
T110 1180-1190 P83156 denotes ferredoxin
T111 1180-1190 P83520 denotes ferredoxin
T112 1180-1190 P00227 denotes ferredoxin
T113 1180-1190 P83524 denotes ferredoxin
T114 1180-1190 Q9TLW0 denotes ferredoxin
T115 1180-1190 P21149 denotes ferredoxin
T116 1180-1190 P00215 denotes ferredoxin
T117 1180-1190 Q8SV19 denotes ferredoxin
T118 1180-1190 P83523 denotes ferredoxin
T119 1180-1190 P51320 denotes ferredoxin
T120 1180-1190 P24496 denotes ferredoxin
T121 1180-1190 Q4UJX3 denotes ferredoxin
T122 1180-1190 Q9UXY2 denotes ferredoxin
T123 1180-1190 P13106 denotes ferredoxin
T124 1180-1190 P00220 denotes ferredoxin
T125 1180-1190 Q1RH11 denotes ferredoxin
T126 1180-1190 P00245 denotes ferredoxin
T127 1180-1190 P29604 denotes ferredoxin
T128 1180-1190 P00233 denotes ferredoxin
T129 1180-1190 P00193 denotes ferredoxin
T130 1180-1190 P68163 denotes ferredoxin
T131 1180-1190 P00216 denotes ferredoxin
T132 1180-1190 P50727 denotes ferredoxin
T133 1180-1190 P68166 denotes ferredoxin
T134 1180-1190 P18821 denotes ferredoxin
T135 1180-1190 P00225 denotes ferredoxin
T136 1180-1190 O98450 denotes ferredoxin
T137 1180-1190 P07838 denotes ferredoxin
T138 1180-1190 Q9ZCC8 denotes ferredoxin
T139 1180-1190 P15788 denotes ferredoxin
T141 1180-1190 P68165 denotes ferredoxin
T142 1180-1190 P11425 denotes ferredoxin
T143 1180-1190 P9WNE6 denotes ferredoxin
T144 1180-1190 P00197 denotes ferredoxin
T145 1180-1190 P13279 denotes ferredoxin
T146 1180-1190 P83526 denotes ferredoxin
T147 1180-1190 P83583 denotes ferredoxin
T148 1180-1190 P22341 denotes ferredoxin
T149 1180-1190 P10245 denotes ferredoxin
T150 1180-1190 P9WNE7 denotes ferredoxin
T151 1180-1190 P00205 denotes ferredoxin
T152 1180-1190 P22846 denotes ferredoxin
T153 1180-1190 P56408 denotes ferredoxin
T154 1180-1190 P07508 denotes ferredoxin
T155 1180-1190 P18820 denotes ferredoxin
T156 1180-1190 P07484 denotes ferredoxin
T157 1180-1190 P00195 denotes ferredoxin
T158 1180-1190 P85121 denotes ferredoxin
T159 1180-1190 Q1XDG7 denotes ferredoxin
T160 1180-1190 P34806 denotes ferredoxin
T161 1180-1190 P81638 denotes ferredoxin
T162 1180-1190 P84872 denotes ferredoxin
T163 1180-1190 P00243 denotes ferredoxin
T165 1180-1190 P29603 denotes ferredoxin
T166 1180-1190 P00200 denotes ferredoxin
T167 1180-1190 P00253 denotes ferredoxin
T168 1180-1190 P00246 denotes ferredoxin
T169 1180-1190 P00242 denotes ferredoxin
T170 1180-1190 P14073 denotes ferredoxin
T171 1180-1190 P00247 denotes ferredoxin
T172 1180-1190 P83522 denotes ferredoxin
T173 1180-1190 P83584 denotes ferredoxin
T174 1180-1190 P00196 denotes ferredoxin
T175 1180-1190 P80168 denotes ferredoxin
T176 1180-1190 P00241 denotes ferredoxin
T177 1180-1190 P64123 denotes ferredoxin
T178 1180-1190 Q68Y04 denotes ferredoxin
T179 1180-1190 Q977X3 denotes ferredoxin
T90 1180-1190 D005288 denotes ferredoxin
T140 1180-1190 CHEBI:5017 denotes ferredoxin
T164 1180-1190 GO:0008042 denotes ferredoxin
T180 1191-1195 PR:000022679 denotes fold
T181 1191-1195 PR:Q2FZJ6 denotes fold
T182 1191-1195 PR:A5I112 denotes fold
T183 1191-1195 PR:P24186 denotes fold
T187 1283-1290 PR:000000001 denotes protein
T185 1283-1290 CHEBI:36080 denotes protein
T186 1283-1290 CHEBI:11122 denotes protein
T188 1283-1290 SO:0000104 denotes protein
T184 1283-1290 GO:0003675 denotes protein
T192 1362-1369 PR:000000001 denotes protein
T190 1362-1369 CHEBI:36080 denotes protein
T191 1362-1369 CHEBI:11122 denotes protein
T193 1362-1369 SO:0000104 denotes protein
T189 1362-1369 GO:0003675 denotes protein
T194 1370-1378 SO:0000001 denotes sequence
T195 1419-1436 SO:0100003 denotes disordered region
T196 1470-1476 SO:0000417 denotes domain
T197 1685-1694 CHEBI:35222 denotes inhibitor
T201 1704-1711 PR:000000001 denotes protein
T198 1704-1711 GO:0003675 denotes protein
T202 1704-1711 SO:0000104 denotes protein
T199 1704-1711 CHEBI:36080 denotes protein
T200 1704-1711 CHEBI:11122 denotes protein
T203 1757-1777 D011994 denotes recombinant proteins
T206 1796-1812 D004926 denotes Escherichia coli
T207 1796-1812 562 denotes Escherichia coli
T211 1829-1857 C088321 denotes nickel-nitrilotriacetic acid
T212 1829-1857 C088321 denotes nickel-nitrilotriacetic acid
T217 1933-1938 UBERON:0007023 denotes adult
T218 1943-1956 D058488 denotes metacercariae
T219 1973-1976 PR:Q32KD2 denotes egg
T220 1973-1976 UBERON:0007379 denotes egg
T221 1973-1976 UBERON:2001109 denotes egg
T222 2056-2064 UBERON:0002199 denotes tegument
T223 2072-2077 UBERON:0007023 denotes adult
T225 2078-2083 P15286 denotes fluke
T227 2078-2083 Q7CQ37 denotes fluke
T226 2078-2083 D014200 denotes fluke
T224 2078-2083 UBERON:0013131 denotes fluke
T229 2227-2233 D014200 denotes flukes
T230 2274-2283 CHEBI:35222 denotes inhibitor
T231 2332-2345 D000871 denotes anthelmintics
T232 2332-2345 D000871 denotes anthelmintics
T233 2332-2345 CHEBI:35443 denotes anthelmintics

PubMed_ArguminSci

Id Subject Object Predicate Lexical cue
T1 133-314 DRI_Challenge denotes The tegument, representing the membrane-bound outer surface of platyhelminth parasites, plays an important role for the regulation of the host immune response and parasite survival.
T2 315-510 DRI_Challenge denotes A comprehensive understanding of tegumental proteins can provide drug candidates for use against helminth-associated diseases, such as clonorchiasis caused by the liver fluke Clonorchis sinensis.
T3 511-602 DRI_Background denotes However, little is known regarding the physicochemical properties of C. sinensis teguments.
T4 603-625 DRI_Background denotes In this study, a novel
T5 646-765 DRI_Background denotes protein of the C. sinensis adult worm (CsTegu20.6) was identified and characterized by molecular and in silico methods.
T6 766-875 DRI_Approach denotes The complete coding sequence of 525 bp was derived from cDNA clones and encodes a protein of 175 amino acids.
T7 876-960 DRI_Background denotes Homology search using BLASTX showed CsTegu20.6 identity ranging from 29% to 39% with
T8 989-1013 DRI_Background denotes proteins in C. sinensis.
T9 1014-1196 DRI_Background denotes Domain analysis indicated the presence of a calcium-binding EF-hand domain containing a basic helix-loop-helix structure and a dynein light chain domain exhibiting a ferredoxin fold.
T10 1197-1346 DRI_Approach denotes We used a modified method to obtain the accurate tertiary structure of the CsTegu20.6 protein because of the unavailability of appropriate templates.
T11 1347-1504 DRI_Approach denotes The CsTegu20.6 protein sequence was split into two domains based on the disordered region, and then, the structure of each domain was modeled using I-TASSER.
T12 1505-1609 DRI_Background denotes A final full-length structure was obtained by combining two structures and refining the whole structure.
T13 1610-1752 DRI_Background denotes A refined CsTegu20.6 structure was used to identify a potential CsTegu20.6 inhibitor based on protein structure-compound interaction analysis.
T14 1753-1882 DRI_Background denotes The recombinant proteins were expressed in Escherichia coli and purified by nickel-nitrilotriacetic acid affinity chromatography.
T15 1883-1977 DRI_Background denotes In C. sinensis, CsTegu20.6 mRNAs were abundant in adult and metacercariae, but not in the egg.
T16 1978-2084 DRI_Outcome denotes Immunohistochemistry revealed that CsTegu20.6 localized to the surface of the tegument in the adult fluke.
T17 2085-2234 DRI_Outcome denotes Collectively, our results contribute to a better understanding of the structural and functional characteristics of CsTegu20.6 and homologs of flukes.
T18 2235-2346 DRI_Approach denotes One compound is proposed as a putative inhibitor of CsTegu20.6 to facilitate further studies for anthelmintics.

Goldhamster2_Cellosaurus

Id Subject Object Predicate Lexical cue
T1 103-104 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T2 227-229 CVCL_8754|Cancer_cell_line|Homo sapiens denotes an
T3 227-229 CVCL_H241|Cancer_cell_line|Homo sapiens denotes an
T4 315-316 CVCL_6479|Finite_cell_line|Mus musculus denotes A
T5 580-581 CVCL_S361|Finite_cell_line|Mus musculus denotes C
T6 618-619 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T7 661-662 CVCL_S361|Finite_cell_line|Mus musculus denotes C
T8 802-804 CVCL_M540|Cancer_cell_line|Homo sapiens denotes bp
T9 802-804 CVCL_WN38|Transformed_cell_line|Rattus norvegicus denotes bp
T10 846-847 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T11 1001-1002 CVCL_S361|Finite_cell_line|Mus musculus denotes C
T12 1056-1057 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T13 1100-1101 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T14 1139-1140 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T15 1178-1179 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T16 1197-1199 CVCL_5M23|Cancer_cell_line|Mesocricetus auratus denotes We
T17 1205-1206 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T18 1505-1506 CVCL_6479|Finite_cell_line|Mus musculus denotes A
T19 1610-1611 CVCL_6479|Finite_cell_line|Mus musculus denotes A
T20 1662-1663 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T21 1829-1835 CVCL_D929|Induced_pluripotent_stem_cell|Homo sapiens denotes nickel
T22 1886-1887 CVCL_S361|Finite_cell_line|Mus musculus denotes C
T23 1973-1976 CVCL_5739|Cancer_cell_line|Mus musculus denotes egg
T24 2125-2126 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T25 2235-2238 CVCL_Z424|Spontaneously_immortalized_cell_line|Ostrinia nubilalis denotes One
T26 2263-2264 CVCL_6479|Finite_cell_line|Mus musculus denotes a