> top > docs > PubMed:28204489 > annotations

PubMed:28204489 JSONTXT

Annnotations TAB JSON ListView MergeView

GlyCosmos15-Species-PubTator

Id Subject Object Predicate Lexical cue db_id
2 55-59 Species denotes rice 4530
17 471-475 Species denotes rice 4530
18 477-495 Species denotes Oryza sativa L. cv
25 1284-1288 Species denotes moss
27 1462-1466 Species denotes moss
28 1468-1483 Species denotes Bryum coronatum 216087

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 493-495 http://identifiers.org/oryzabase.gene/22146 denotes cv
T2 509-517 http://identifiers.org/oryzabase.gene/8130 denotes OsChia2a
T3 723-731 http://identifiers.org/oryzabase.gene/8130 denotes OsChia2a
T4 880-888 http://identifiers.org/oryzabase.gene/8130 denotes OsChia2a
T5 1006-1014 http://identifiers.org/oryzabase.gene/8130 denotes OsChia2a
T6 1023-1031 http://identifiers.org/oryzabase.gene/8130 denotes OsChia2a
T7 1523-1531 http://identifiers.org/oryzabase.gene/8130 denotes OsChia2a
T75838 493-495 http://identifiers.org/ricegap/LOC_Os05g49940 denotes cv
T27062 509-517 http://identifiers.org/ricegap/LOC_Os10g39680 denotes OsChia2a
T53924 723-731 http://identifiers.org/ricegap/LOC_Os10g39680 denotes OsChia2a
T23365 880-888 http://identifiers.org/ricegap/LOC_Os10g39680 denotes OsChia2a
T5231 1006-1014 http://identifiers.org/ricegap/LOC_Os10g39680 denotes OsChia2a
T16099 1023-1031 http://identifiers.org/ricegap/LOC_Os10g39680 denotes OsChia2a
T84944 1523-1531 http://identifiers.org/ricegap/LOC_Os10g39680 denotes OsChia2a
T53833 493-495 http://identifiers.org/rapdb.locus/Os05g0575000 denotes cv
T73101 509-517 http://identifiers.org/rapdb.locus/Os10g0542900 denotes OsChia2a
T7125 723-731 http://identifiers.org/rapdb.locus/Os10g0542900 denotes OsChia2a
T75290 880-888 http://identifiers.org/rapdb.locus/Os10g0542900 denotes OsChia2a
T38447 1006-1014 http://identifiers.org/rapdb.locus/Os10g0542900 denotes OsChia2a
T31838 1023-1031 http://identifiers.org/rapdb.locus/Os10g0542900 denotes OsChia2a
T54805 1523-1531 http://identifiers.org/rapdb.locus/Os10g0542900 denotes OsChia2a
T48051 509-517 http://identifiers.org/uniprot/Q7XCK6 denotes OsChia2a
T64883 723-731 http://identifiers.org/uniprot/Q7XCK6 denotes OsChia2a
T88815 880-888 http://identifiers.org/uniprot/Q7XCK6 denotes OsChia2a
T91803 1006-1014 http://identifiers.org/uniprot/Q7XCK6 denotes OsChia2a
T37113 1023-1031 http://identifiers.org/uniprot/Q7XCK6 denotes OsChia2a
T31364 1523-1531 http://identifiers.org/uniprot/Q7XCK6 denotes OsChia2a
M_0 371-378 hunflair:NA:Chemical denotes aglycon
M_1 1070-1075 hunflair:NA:Chemical denotes Glu68
M_2 802-808 hunflair:NA:Chemical denotes GlcNAc
M_3 1148-1154 hunflair:NA:Chemical denotes GlcNAc
M_4 1228-1234 hunflair:NA:Chemical denotes GlcNAc
M_5 1653-1659 hunflair:NA:Chemical denotes GlcNAc
M_6 26-40 hunflair:NA:Gene denotes GH19 chitinase
M_7 451-465 hunflair:NA:Gene denotes GH19 chitinase
M_8 1289-1303 hunflair:NA:Gene denotes GH19 chitinase
M_9 1438-1452 hunflair:NA:Gene denotes GH19 chitinase
M_10 509-517 hunflair:NA:Gene denotes OsChia2a
M_11 723-731 hunflair:NA:Gene denotes OsChia2a
M_12 880-888 hunflair:NA:Gene denotes OsChia2a
M_13 1006-1014 hunflair:NA:Gene denotes OsChia2a
M_14 1023-1031 hunflair:NA:Gene denotes OsChia2a
M_15 1523-1531 hunflair:NA:Gene denotes OsChia2a
M_16 783-799 hunflair:NA:Chemical denotes oligosaccharides
M_17 151-166 hunflair:NA:Gene denotes GH19 chitinases
M_18 55-59 hunflair:NA:Species denotes rice
M_19 471-475 hunflair:NA:Species denotes rice
M_20 801-810 hunflair:NA:Chemical denotes (GlcNAc)n
M_21 1147-1156 hunflair:NA:Chemical denotes (GlcNAc)n
M_22 1227-1236 hunflair:NA:Chemical denotes (GlcNAc)n
M_23 1652-1661 hunflair:NA:Chemical denotes (GlcNAc)n
M_24 31-40 hunflair:NA:Gene denotes chitinase
M_25 456-465 hunflair:NA:Gene denotes chitinase
M_26 1294-1303 hunflair:NA:Gene denotes chitinase
M_27 1443-1452 hunflair:NA:Gene denotes chitinase
M_28 1091-1100 hunflair:NA:Chemical denotes glutamine
M_29 1284-1288 hunflair:NA:Species denotes moss
M_30 1462-1466 hunflair:NA:Species denotes moss
M_31 1468-1483 hunflair:NA:Species denotes Bryum coronatum
M_32 477-495 hunflair:NA:Species denotes Oryza sativa L. cv
M_33 359-366 hunflair:NA:Chemical denotes glycon-
M_34 1431-1452 hunflair:NA:Gene denotes family GH19 chitinase

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 255-256 http://identifiers.org/oryzabase.gene/11216 denotes 1

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-118 Sentence denotes Enzymatic properties of a GH19 chitinase isolated from rice lacking a major loop structure involved in chitin binding.
TextSentencer_T2 119-393 Sentence denotes The catalytic domains of family GH19 chitinases have been found to consist of a conserved, α-helical core-region and different numbers (1-6) of loop structures, located at both ends of the substrate-binding groove and which extend over the glycon- and aglycon-binding sites.
TextSentencer_T3 394-496 Sentence denotes We expressed, purified and enzymatically characterized a GH19 chitinase from rice, Oryza sativa L. cv.
TextSentencer_T4 497-620 Sentence denotes Nipponbare (OsChia2a), lacking a major loop structure (loop III) connected to the functionally important β-stranded region.
TextSentencer_T5 621-718 Sentence denotes The new enzyme thus contained the five remaining loop structures (loops I, II, IV, V and C-term).
TextSentencer_T6 719-923 Sentence denotes The OsChia2a recombinant protein catalyzed hydrolysis of chitin oligosaccharides, (GlcNAc)n (n = 3-6), with inversion of anomeric configuration, indicating that OsChia2a correctly folded without loop III.
TextSentencer_T7 924-1388 Sentence denotes From thermal unfolding experiments and calorimetric titrations using the inactive OsChia2a mutant (OsChia2a-E68Q), in which the catalytic residue Glu68 was mutated to glutamine, we found that the binding affinities towards (GlcNAc)n (n = 2-6) were almost proportional to the degree of polymerization of (GlcNAc)n, but were much lower than those obtained for a moss GH19 chitinase having only loop III [Ohnuma T, Sørlie M, Fukuda T, Kawamoto N, Taira T, Fukamizo T.
TextSentencer_T8 1389-1394 Sentence denotes 2011.
TextSentencer_T9 1395-1484 Sentence denotes Chitin oligosaccharide binding to a family GH19 chitinase from the moss, Bryum coronatum.
TextSentencer_T10 1485-1492 Sentence denotes FEBS J.
TextSentencer_T11 1493-1508 Sentence denotes 278:3991-4001].
TextSentencer_T12 1509-1574 Sentence denotes Nevertheless, OsChia2a exhibited significant antifungal activity.
TextSentencer_T13 1575-1716 Sentence denotes It appears that loop III connected to the β-stranded region is important for (GlcNAc)n binding, but is not essential for antifungal activity.
T1 0-118 Sentence denotes Enzymatic properties of a GH19 chitinase isolated from rice lacking a major loop structure involved in chitin binding.
T2 119-393 Sentence denotes The catalytic domains of family GH19 chitinases have been found to consist of a conserved, α-helical core-region and different numbers (1-6) of loop structures, located at both ends of the substrate-binding groove and which extend over the glycon- and aglycon-binding sites.
T3 394-496 Sentence denotes We expressed, purified and enzymatically characterized a GH19 chitinase from rice, Oryza sativa L. cv.
T4 497-620 Sentence denotes Nipponbare (OsChia2a), lacking a major loop structure (loop III) connected to the functionally important β-stranded region.
T5 621-718 Sentence denotes The new enzyme thus contained the five remaining loop structures (loops I, II, IV, V and C-term).
T6 719-923 Sentence denotes The OsChia2a recombinant protein catalyzed hydrolysis of chitin oligosaccharides, (GlcNAc)n (n = 3-6), with inversion of anomeric configuration, indicating that OsChia2a correctly folded without loop III.
T7 924-1388 Sentence denotes From thermal unfolding experiments and calorimetric titrations using the inactive OsChia2a mutant (OsChia2a-E68Q), in which the catalytic residue Glu68 was mutated to glutamine, we found that the binding affinities towards (GlcNAc)n (n = 2-6) were almost proportional to the degree of polymerization of (GlcNAc)n, but were much lower than those obtained for a moss GH19 chitinase having only loop III [Ohnuma T, Sørlie M, Fukuda T, Kawamoto N, Taira T, Fukamizo T.
T8 1389-1394 Sentence denotes 2011.
T9 1395-1484 Sentence denotes Chitin oligosaccharide binding to a family GH19 chitinase from the moss, Bryum coronatum.
T10 1485-1492 Sentence denotes FEBS J.
T11 1493-1508 Sentence denotes 278:3991-4001].
T12 1509-1574 Sentence denotes Nevertheless, OsChia2a exhibited significant antifungal activity.
T13 1575-1716 Sentence denotes It appears that loop III connected to the β-stranded region is important for (GlcNAc)n binding, but is not essential for antifungal activity.

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 509-517 http://identifiers.org/oryzabase.gene/8130 denotes OsChia2a
T2 723-731 http://identifiers.org/oryzabase.gene/8130 denotes OsChia2a
T3 880-888 http://identifiers.org/oryzabase.gene/8130 denotes OsChia2a
T4 1006-1014 http://identifiers.org/oryzabase.gene/8130 denotes OsChia2a
T5 1023-1031 http://identifiers.org/oryzabase.gene/8130 denotes OsChia2a
T6 1523-1531 http://identifiers.org/oryzabase.gene/8130 denotes OsChia2a
T52916 509-517 http://identifiers.org/rapdb.locus/Os10g0542900 denotes OsChia2a
T86511 723-731 http://identifiers.org/rapdb.locus/Os10g0542900 denotes OsChia2a
T70120 880-888 http://identifiers.org/rapdb.locus/Os10g0542900 denotes OsChia2a
T38845 1006-1014 http://identifiers.org/rapdb.locus/Os10g0542900 denotes OsChia2a
T34076 1023-1031 http://identifiers.org/rapdb.locus/Os10g0542900 denotes OsChia2a
T30518 1523-1531 http://identifiers.org/rapdb.locus/Os10g0542900 denotes OsChia2a

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 371-378 hunflair:NA:Chemical denotes aglycon
M_1 1070-1075 hunflair:NA:Chemical denotes Glu68
M_2 802-808 hunflair:NA:Chemical denotes GlcNAc
M_3 1148-1154 hunflair:NA:Chemical denotes GlcNAc
M_4 1228-1234 hunflair:NA:Chemical denotes GlcNAc
M_5 1653-1659 hunflair:NA:Chemical denotes GlcNAc
M_6 26-40 hunflair:NA:Gene denotes GH19 chitinase
M_7 451-465 hunflair:NA:Gene denotes GH19 chitinase
M_8 1289-1303 hunflair:NA:Gene denotes GH19 chitinase
M_9 1438-1452 hunflair:NA:Gene denotes GH19 chitinase
M_10 509-517 hunflair:NA:Gene denotes OsChia2a
M_11 723-731 hunflair:NA:Gene denotes OsChia2a
M_12 880-888 hunflair:NA:Gene denotes OsChia2a
M_13 1006-1014 hunflair:NA:Gene denotes OsChia2a
M_14 1023-1031 hunflair:NA:Gene denotes OsChia2a
M_15 1523-1531 hunflair:NA:Gene denotes OsChia2a
M_16 783-799 hunflair:NA:Chemical denotes oligosaccharides
M_17 151-166 hunflair:NA:Gene denotes GH19 chitinases
M_18 55-59 hunflair:NA:Species denotes rice
M_19 471-475 hunflair:NA:Species denotes rice
M_20 801-810 hunflair:NA:Chemical denotes (GlcNAc)n
M_21 1147-1156 hunflair:NA:Chemical denotes (GlcNAc)n
M_22 1227-1236 hunflair:NA:Chemical denotes (GlcNAc)n
M_23 1652-1661 hunflair:NA:Chemical denotes (GlcNAc)n
M_24 31-40 hunflair:NA:Gene denotes chitinase
M_25 456-465 hunflair:NA:Gene denotes chitinase
M_26 1294-1303 hunflair:NA:Gene denotes chitinase
M_27 1443-1452 hunflair:NA:Gene denotes chitinase
M_28 1091-1100 hunflair:NA:Chemical denotes glutamine
M_29 1284-1288 hunflair:NA:Species denotes moss
M_30 1462-1466 hunflair:NA:Species denotes moss
M_31 1468-1483 hunflair:NA:Species denotes Bryum coronatum
M_32 477-495 hunflair:NA:Species denotes Oryza sativa L. cv
M_33 359-366 hunflair:NA:Chemical denotes glycon-
M_34 1431-1452 hunflair:NA:Gene denotes family GH19 chitinase

NGLY1-deficiency

Id Subject Object Predicate Lexical cue
PD-NGLY1-deficiency-B_T1 802-808 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T2 1148-1154 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T3 1228-1234 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T4 1653-1659 chem:24139 denotes GlcNAc

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 103-109 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T2 776-782 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T3 1395-1401 Glycan denotes Chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 103-109 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T2 776-782 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 326-332 Body_part denotes groove http://purl.obolibrary.org/obo/UBERON_0004704|http://purl.obolibrary.org/obo/UBERON_0006846|http://purl.obolibrary.org/obo/UBERON_0014764

GlyCosmos15-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 827-836 Disease denotes inversion MONDO:0043678

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-118 Sentence denotes Enzymatic properties of a GH19 chitinase isolated from rice lacking a major loop structure involved in chitin binding.
T2 119-393 Sentence denotes The catalytic domains of family GH19 chitinases have been found to consist of a conserved, α-helical core-region and different numbers (1-6) of loop structures, located at both ends of the substrate-binding groove and which extend over the glycon- and aglycon-binding sites.
T3 394-496 Sentence denotes We expressed, purified and enzymatically characterized a GH19 chitinase from rice, Oryza sativa L. cv.
T4 497-620 Sentence denotes Nipponbare (OsChia2a), lacking a major loop structure (loop III) connected to the functionally important β-stranded region.
T5 621-718 Sentence denotes The new enzyme thus contained the five remaining loop structures (loops I, II, IV, V and C-term).
T6 719-923 Sentence denotes The OsChia2a recombinant protein catalyzed hydrolysis of chitin oligosaccharides, (GlcNAc)n (n = 3-6), with inversion of anomeric configuration, indicating that OsChia2a correctly folded without loop III.
T7 924-1394 Sentence denotes From thermal unfolding experiments and calorimetric titrations using the inactive OsChia2a mutant (OsChia2a-E68Q), in which the catalytic residue Glu68 was mutated to glutamine, we found that the binding affinities towards (GlcNAc)n (n = 2-6) were almost proportional to the degree of polymerization of (GlcNAc)n, but were much lower than those obtained for a moss GH19 chitinase having only loop III [Ohnuma T, Sørlie M, Fukuda T, Kawamoto N, Taira T, Fukamizo T. 2011.
T8 1395-1484 Sentence denotes Chitin oligosaccharide binding to a family GH19 chitinase from the moss, Bryum coronatum.
T9 1485-1508 Sentence denotes FEBS J. 278:3991-4001].
T10 1509-1574 Sentence denotes Nevertheless, OsChia2a exhibited significant antifungal activity.
T11 1575-1716 Sentence denotes It appears that loop III connected to the β-stranded region is important for (GlcNAc)n binding, but is not essential for antifungal activity.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-118 Sentence denotes Enzymatic properties of a GH19 chitinase isolated from rice lacking a major loop structure involved in chitin binding.
T2 119-393 Sentence denotes The catalytic domains of family GH19 chitinases have been found to consist of a conserved, α-helical core-region and different numbers (1-6) of loop structures, located at both ends of the substrate-binding groove and which extend over the glycon- and aglycon-binding sites.
T3 394-496 Sentence denotes We expressed, purified and enzymatically characterized a GH19 chitinase from rice, Oryza sativa L. cv.
T4 497-620 Sentence denotes Nipponbare (OsChia2a), lacking a major loop structure (loop III) connected to the functionally important β-stranded region.
T5 621-718 Sentence denotes The new enzyme thus contained the five remaining loop structures (loops I, II, IV, V and C-term).
T6 719-923 Sentence denotes The OsChia2a recombinant protein catalyzed hydrolysis of chitin oligosaccharides, (GlcNAc)n (n = 3-6), with inversion of anomeric configuration, indicating that OsChia2a correctly folded without loop III.
T7 924-1394 Sentence denotes From thermal unfolding experiments and calorimetric titrations using the inactive OsChia2a mutant (OsChia2a-E68Q), in which the catalytic residue Glu68 was mutated to glutamine, we found that the binding affinities towards (GlcNAc)n (n = 2-6) were almost proportional to the degree of polymerization of (GlcNAc)n, but were much lower than those obtained for a moss GH19 chitinase having only loop III [Ohnuma T, Sørlie M, Fukuda T, Kawamoto N, Taira T, Fukamizo T. 2011.
T8 1395-1484 Sentence denotes Chitin oligosaccharide binding to a family GH19 chitinase from the moss, Bryum coronatum.
T9 1485-1508 Sentence denotes FEBS J. 278:3991-4001].
T10 1509-1574 Sentence denotes Nevertheless, OsChia2a exhibited significant antifungal activity.
T11 1575-1716 Sentence denotes It appears that loop III connected to the β-stranded region is important for (GlcNAc)n binding, but is not essential for antifungal activity.

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 55-59 OrganismTaxon denotes rice 4530
T2 471-475 OrganismTaxon denotes rice 4530
T3 477-489 OrganismTaxon denotes Oryza sativa 4530
T4 1368-1373 OrganismTaxon denotes Taira 700687
T5 1468-1483 OrganismTaxon denotes Bryum coronatum 216087

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 326-332 Body_part denotes groove FMA:75037

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 55-59 OrganismTaxon denotes rice 4530
T2 471-475 OrganismTaxon denotes rice 4530
T3 477-489 OrganismTaxon denotes Oryza sativa 4530
T4 1368-1373 OrganismTaxon denotes Taira 700687
T5 1468-1483 OrganismTaxon denotes Bryum coronatum 216087

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 326-332 Body_part denotes groove http://purl.obolibrary.org/obo/UBERON_0004704|http://purl.obolibrary.org/obo/UBERON_0006846|http://purl.obolibrary.org/obo/UBERON_0014764