PubMed:28106309
Annnotations
pqqtest_sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 1694-1716 | cand:PECO:0007310-Ac/Ds transposable element exposure | denotes | TE-associated lincRNAs |
| M_1 | 1694-1716 | cand:PECO:0007307-transposable element insert exposure | denotes | TE-associated lincRNAs |
| M_2 | 1694-1716 | cand:funRiceGene:336-homeobox gene | denotes | TE-associated lincRNAs |
| M_3 | 1694-1716 | cand:PO:0009075-plant ontology | denotes | TE-associated lincRNAs |
| M_4 | 1694-1716 | cand:TO:0006010-lodicule number | denotes | TE-associated lincRNAs |
| M_5 | 1694-1716 | cand:TO:0000002-epigenetic trait | denotes | TE-associated lincRNAs |
| M_6 | 1694-1716 | cand:TO:0000544-mesocotyl length | denotes | TE-associated lincRNAs |
| M_7 | 1694-1716 | cand:funRiceGene:14-jasmonate response | denotes | TE-associated lincRNAs |
| M_8 | 1694-1716 | cand:TO:0000069-variegated leaf | denotes | TE-associated lincRNAs |
| M_9 | 1694-1716 | cand:PO:0006417-tassel peduncle | denotes | TE-associated lincRNAs |
| M_10 | 1694-1716 | cand:WTO:0000195-soil mineral | denotes | TE-associated lincRNAs |
| M_11 | 1480-1495 | cand:funRiceGene:336-homeobox gene | denotes | unique lincRNAs |
| M_12 | 1480-1495 | cand:PPO:0002327-open floral structures present | denotes | unique lincRNAs |
| M_13 | 1480-1495 | cand:PO:0025578-collective phyllome structure development stage | denotes | unique lincRNAs |
| M_14 | 1480-1495 | cand:PO:0025571-multi-tissue plant structure development stage | denotes | unique lincRNAs |
| M_15 | 1480-1495 | cand:TO:0002611-homeotic development trait | denotes | unique lincRNAs |
| M_16 | 1480-1495 | cand:PPO:0002626-open floral structures absent | denotes | unique lincRNAs |
| M_17 | 1480-1495 | cand:funRiceGene:252-silicon | denotes | unique lincRNAs |
| M_18 | 1480-1495 | cand:funRiceGene:161-helicase | denotes | unique lincRNAs |
| M_19 | 1480-1495 | cand:PPO:0001013-true leaf | denotes | unique lincRNAs |
| M_20 | 1480-1495 | cand:WTO:0000195-soil mineral | denotes | unique lincRNAs |
| M_21 | 1480-1495 | cand:funRiceGene:179-Ubiquitin | denotes | unique lincRNAs |
| M_22 | 1789-1800 | GeneID:NA | denotes | TE-lincRNAs |
| M_23 | 1474-1478 | GeneID:NA | denotes | ddm1 |
| T84578 | 1211-1226 | xzyao:24263 | denotes | cold treatments |
| T24865 | 1295-1300 | funRiceGene:175 | denotes | ABA |
| T28978 | 0-21 | xzyao:32372 | denotes | Transposable elements |
| T62811 | 466-487 | xzyao:32372 | denotes | transposable elements |
| T37178 | 1349-1356 | funRiceGene:8 | denotes | biomass |
| T11462 | 1755-1771 | xzyao:18351 | denotes | stress responses |
| T50347 | 700-719 | xzyao:38569 | denotes | expression patterns |
| T27182 | 1319-1331 | xzyao:16543 | denotes | longer roots |
| T88696 | 1211-1215 | WTO:0000129, funRiceGene:509 | denotes | cold |
| T83988 | 1523-1537 | PPO:0000014 | denotes | generated from |
| T77731 | 1343-1348 | funRiceGene:87 | denotes | shoot |
| T70103 | 1182-1186 | funRiceGene:528 | denotes | salt |
| T7460 | 1188-1201 | funRiceGene:339, xzyao:16388 | denotes | abscisic acid |
| T39768 | 42-48 | funRiceGene:361 | denotes | stress |
| T50891 | 1142-1148 | funRiceGene:361 | denotes | stress |
| T19074 | 1755-1761 | funRiceGene:361 | denotes | stress |
| T88003 | 1203-1206 | funRiceGene:140 | denotes | ABA |
| T64905 | 1296-1299 | funRiceGene:140 | denotes | ABA |
| T69110 | 1747-1771 | xzyao:5190 | denotes | abiotic stress responses |
| T79302 | 1480-1495 | xzyao:15671 | denotes | unique lincRNAs |
| T83064 | 339-362 | xzyao:23724 | denotes | multicellular organisms |
| T77148 | 909-924 | xzyao:40348 | denotes | DNA transposons |
| T95661 | 1343-1356 | xzyao:35298 | denotes | shoot biomass |
| T13015 | 1747-1761 | WTO:0000062, funRiceGene:360, xzyao:24849 | denotes | abiotic stress |
| M_24 | 757-762 | hunflair:NA:Species | denotes | maize |
| M_25 | 977-982 | hunflair:NA:Species | denotes | maize |
| M_26 | 735-746 | hunflair:NA:Species | denotes | Arabidopsis |
| M_27 | 1232-1243 | hunflair:NA:Species | denotes | Arabidopsis |
| M_28 | 1433-1444 | hunflair:NA:Species | denotes | Arabidopsis |
| M_29 | 353-362 | hunflair:NA:Species | denotes | organisms |
| M_30 | 1244-1259 | hunflair:NA:Gene | denotes | TE-lincRNA11195 |
| M_31 | 1203-1206 | hunflair:NA:Chemical | denotes | ABA |
| M_32 | 1296-1299 | hunflair:NA:Chemical | denotes | ABA |
| M_33 | 1188-1201 | hunflair:NA:Chemical | denotes | abscisic acid |
| M_34 | 1474-1478 | hunflair:NA:Gene | denotes | ddm1 |
| M_35 | 748-752 | hunflair:NA:Species | denotes | rice |
| M_36 | 968-972 | hunflair:NA:Species | denotes | rice |
| M_37 | 1188-1201 | pubtator:MESH:D000040:Chemical | denotes | abscisic acid |
| M_38 | 735-746 | pubtator:3702:Species | denotes | Arabidopsis |
| M_39 | 1232-1243 | pubtator:3702:Species | denotes | Arabidopsis |
| M_40 | 1433-1444 | pubtator:3702:Species | denotes | Arabidopsis |
| M_41 | 757-762 | pubtator:4577:Species | denotes | maize |
| M_42 | 977-982 | pubtator:4577:Species | denotes | maize |
| M_43 | 748-752 | pubtator:4530:Species | denotes | rice |
| M_44 | 968-972 | pubtator:4530:Species | denotes | rice |
21k_plant_trait_mention
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 1755-1761 | funRiceGene:361 | denotes | stress |
| M_1 | 1188-1201 | funRiceGene:339, xzyao:8823 | denotes | abscisic acid |
| M_2 | 1349-1356 | funRiceGene:8 | denotes | biomass |
| M_3 | 1523-1537 | PPO:0000014, xzyao:3545 | denotes | generated from |
| M_4 | 1296-1299 | funRiceGene:140 | denotes | ABA |
| M_5 | 1343-1356 | xzyao:11013 | denotes | shoot biomass |
| M_6 | 1211-1215 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_7 | 1741-1771 | xzyao:5051 | denotes | plant abiotic stress responses |
| M_8 | 1741-1761 | xzyao:14214 | denotes | plant abiotic stress |
| M_9 | 1747-1761 | WTO:0000062, funRiceGene:360, xzyao:2557 | denotes | abiotic stress |
| M_10 | 1343-1348 | funRiceGene:87 | denotes | shoot |
| M_11 | 1203-1206 | hunflair:NA:Chemical | denotes | ABA |
| M_12 | 1296-1299 | hunflair:NA:Chemical | denotes | ABA |
| M_13 | 1188-1201 | hunflair:NA:Chemical | denotes | abscisic acid |
| M_14 | 1474-1478 | hunflair:NA:Gene | denotes | ddm1 |
| M_15 | 353-362 | hunflair:NA:Species | denotes | organisms |
| M_16 | 735-746 | hunflair:NA:Species | denotes | Arabidopsis |
| M_17 | 1232-1243 | hunflair:NA:Species | denotes | Arabidopsis |
| M_18 | 1433-1444 | hunflair:NA:Species | denotes | Arabidopsis |
| M_19 | 748-752 | hunflair:NA:Species | denotes | rice |
| M_20 | 968-972 | hunflair:NA:Species | denotes | rice |
| M_21 | 1244-1259 | hunflair:NA:Gene | denotes | TE-lincRNA11195 |
| M_22 | 757-762 | hunflair:NA:Species | denotes | maize |
| M_23 | 977-982 | hunflair:NA:Species | denotes | maize |
| M_24 | 1188-1201 | pubtator:MESH:D000040:Chemical | denotes | abscisic acid |
| M_25 | 748-752 | pubtator:4530:Species | denotes | rice |
| M_26 | 968-972 | pubtator:4530:Species | denotes | rice |
| M_27 | 735-746 | pubtator:3702:Species | denotes | Arabidopsis |
| M_28 | 1232-1243 | pubtator:3702:Species | denotes | Arabidopsis |
| M_29 | 1433-1444 | pubtator:3702:Species | denotes | Arabidopsis |
| M_30 | 757-762 | pubtator:4577:Species | denotes | maize |
| M_31 | 977-982 | pubtator:4577:Species | denotes | maize |
OryzaGP_2021
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 794-796 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T2 | 818-820 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T3 | 846-848 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T4 | 932-947 | http://identifiers.org/oryzabase.gene/2983 | denotes | retrotransposon |
| T5 | 998-1000 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T6 | 1048-1050 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T7 | 1079-1081 | http://identifiers.org/oryzabase.gene/319 | denotes | RT |
| T8 | 1157-1159 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T9 | 1182-1186 | http://identifiers.org/oryzabase.gene/451 | denotes | salt |
| T10 | 1182-1186 | http://identifiers.org/oryzabase.gene/21170 | denotes | salt |
| T11 | 1188-1201 | http://identifiers.org/oryzabase.gene/8408 | denotes | abscisic acid |
| T12 | 1203-1206 | http://identifiers.org/oryzabase.gene/6003 | denotes | ABA |
| T13 | 1203-1206 | http://identifiers.org/oryzabase.gene/8408 | denotes | ABA |
| T14 | 1244-1246 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T15 | 1296-1299 | http://identifiers.org/oryzabase.gene/6003 | denotes | ABA |
| T16 | 1296-1299 | http://identifiers.org/oryzabase.gene/8408 | denotes | ABA |
| T17 | 1474-1478 | http://identifiers.org/oryzabase.gene/11855 | denotes | ddm1 |
| T18 | 1506-1508 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T19 | 1694-1696 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T20 | 1789-1791 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T21 | 1807-1810 | http://identifiers.org/oryzabase.gene/23496 | denotes | act |
| T35399 | 794-796 | http://identifiers.org/ricegap/LOC_Os03g03150 | denotes | TE |
| T94634 | 818-820 | http://identifiers.org/ricegap/LOC_Os03g03150 | denotes | TE |
| T74768 | 846-848 | http://identifiers.org/ricegap/LOC_Os03g03150 | denotes | TE |
| T72347 | 998-1000 | http://identifiers.org/ricegap/LOC_Os03g03150 | denotes | TE |
| T82814 | 1048-1050 | http://identifiers.org/ricegap/LOC_Os03g03150 | denotes | TE |
| T68421 | 1157-1159 | http://identifiers.org/ricegap/LOC_Os03g03150 | denotes | TE |
| T78617 | 1182-1186 | http://identifiers.org/ricegap/LOC_Os11g07450 | denotes | salt |
| T86252 | 1182-1186 | http://identifiers.org/ricegap/LOC_Os01g24710 | denotes | salt |
| T57237 | 1188-1201 | http://identifiers.org/ricegap/LOC_Os11g06720 | denotes | abscisic acid |
| T95105 | 1203-1206 | http://identifiers.org/ricegap/LOC_Os11g06720 | denotes | ABA |
| T19962 | 1203-1206 | http://identifiers.org/ricegap/LOC_Os04g34600 | denotes | ABA |
| T26757 | 1203-1206 | http://identifiers.org/ricegap/LOC_Os02g33820 | denotes | ABA |
| T69804 | 1203-1206 | http://identifiers.org/ricegap/LOC_Os01g73250 | denotes | ABA |
| T85398 | 1203-1206 | http://identifiers.org/ricegap/LOC_Os01g72910 | denotes | ABA |
| T20368 | 1203-1206 | http://identifiers.org/ricegap/LOC_Os01g72900 | denotes | ABA |
| T63385 | 1244-1246 | http://identifiers.org/ricegap/LOC_Os03g03150 | denotes | TE |
| T18755 | 1296-1299 | http://identifiers.org/ricegap/LOC_Os11g06720 | denotes | ABA |
| T46834 | 1296-1299 | http://identifiers.org/ricegap/LOC_Os04g34600 | denotes | ABA |
| T39845 | 1296-1299 | http://identifiers.org/ricegap/LOC_Os02g33820 | denotes | ABA |
| T19320 | 1296-1299 | http://identifiers.org/ricegap/LOC_Os01g73250 | denotes | ABA |
| T88319 | 1296-1299 | http://identifiers.org/ricegap/LOC_Os01g72910 | denotes | ABA |
| T22 | 1296-1299 | http://identifiers.org/ricegap/LOC_Os01g72900 | denotes | ABA |
| T23 | 1474-1478 | http://identifiers.org/ricegap/LOC_Os03g51230 | denotes | ddm1 |
| T24 | 1506-1508 | http://identifiers.org/ricegap/LOC_Os03g03150 | denotes | TE |
| T25 | 1694-1696 | http://identifiers.org/ricegap/LOC_Os03g03150 | denotes | TE |
| T26 | 1789-1791 | http://identifiers.org/ricegap/LOC_Os03g03150 | denotes | TE |
| T27 | 1807-1810 | http://identifiers.org/ricegap/LOC_Os03g47860 | denotes | act |
| T69967 | 794-796 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T39086 | 818-820 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T44775 | 846-848 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T1528 | 998-1000 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T12692 | 1048-1050 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T68288 | 1157-1159 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T65814 | 1182-1186 | http://identifiers.org/rapdb.locus/Os11g0175500 | denotes | salt |
| T71493 | 1182-1186 | http://identifiers.org/rapdb.locus/Os01g0348900 | denotes | salt |
| T87873 | 1188-1201 | http://identifiers.org/rapdb.locus/Os11g0167800 | denotes | abscisic acid |
| T3676 | 1203-1206 | http://identifiers.org/rapdb.locus/Os11g0167800 | denotes | ABA |
| T63540 | 1203-1206 | http://identifiers.org/rapdb.locus/Os04g0423400 | denotes | ABA |
| T20253 | 1203-1206 | http://identifiers.org/rapdb.locus/Os02g0543000 | denotes | ABA |
| T50476 | 1203-1206 | http://identifiers.org/rapdb.locus/Os01g0963600 | denotes | ABA |
| T95339 | 1203-1206 | http://identifiers.org/rapdb.locus/Os01g0959200 | denotes | ABA |
| T49897 | 1203-1206 | http://identifiers.org/rapdb.locus/Os01g0959100 | denotes | ABA |
| T15869 | 1244-1246 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T67557 | 1296-1299 | http://identifiers.org/rapdb.locus/Os11g0167800 | denotes | ABA |
| T34759 | 1296-1299 | http://identifiers.org/rapdb.locus/Os04g0423400 | denotes | ABA |
| T40358 | 1296-1299 | http://identifiers.org/rapdb.locus/Os02g0543000 | denotes | ABA |
| T88718 | 1296-1299 | http://identifiers.org/rapdb.locus/Os01g0963600 | denotes | ABA |
| T38913 | 1296-1299 | http://identifiers.org/rapdb.locus/Os01g0959200 | denotes | ABA |
| T33195 | 1296-1299 | http://identifiers.org/rapdb.locus/Os01g0959100 | denotes | ABA |
| T57708 | 1474-1478 | http://identifiers.org/rapdb.locus/Os03g0722400 | denotes | ddm1 |
| T63881 | 1506-1508 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T89432 | 1694-1696 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T76044 | 1789-1791 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T10993 | 1807-1810 | http://identifiers.org/rapdb.locus/Os03g0682900 | denotes | act |
| T7865 | 794-796 | http://identifiers.org/uniprot/Q4TU48 | denotes | TE |
| T15682 | 794-796 | http://identifiers.org/uniprot/Q10SH0 | denotes | TE |
| T17650 | 818-820 | http://identifiers.org/uniprot/Q4TU48 | denotes | TE |
| T30722 | 818-820 | http://identifiers.org/uniprot/Q10SH0 | denotes | TE |
| T40530 | 846-848 | http://identifiers.org/uniprot/Q4TU48 | denotes | TE |
| T17628 | 846-848 | http://identifiers.org/uniprot/Q10SH0 | denotes | TE |
| T68180 | 998-1000 | http://identifiers.org/uniprot/Q4TU48 | denotes | TE |
| T18621 | 998-1000 | http://identifiers.org/uniprot/Q10SH0 | denotes | TE |
| T40242 | 1048-1050 | http://identifiers.org/uniprot/Q4TU48 | denotes | TE |
| T28994 | 1048-1050 | http://identifiers.org/uniprot/Q10SH0 | denotes | TE |
| T82145 | 1157-1159 | http://identifiers.org/uniprot/Q4TU48 | denotes | TE |
| T87363 | 1157-1159 | http://identifiers.org/uniprot/Q10SH0 | denotes | TE |
| T53128 | 1182-1186 | http://identifiers.org/uniprot/Q53PH3 | denotes | salt |
| T14000 | 1182-1186 | http://identifiers.org/uniprot/B9G9N6 | denotes | salt |
| T66910 | 1188-1201 | http://identifiers.org/uniprot/Q53JF7 | denotes | abscisic acid |
| T46060 | 1203-1206 | http://identifiers.org/uniprot/Q53JF7 | denotes | ABA |
| T87864 | 1244-1246 | http://identifiers.org/uniprot/Q4TU48 | denotes | TE |
| T53491 | 1244-1246 | http://identifiers.org/uniprot/Q10SH0 | denotes | TE |
| T15041 | 1296-1299 | http://identifiers.org/uniprot/Q53JF7 | denotes | ABA |
| T53878 | 1506-1508 | http://identifiers.org/uniprot/Q4TU48 | denotes | TE |
| T80864 | 1506-1508 | http://identifiers.org/uniprot/Q10SH0 | denotes | TE |
| T8139 | 1694-1696 | http://identifiers.org/uniprot/Q4TU48 | denotes | TE |
| T6492 | 1694-1696 | http://identifiers.org/uniprot/Q10SH0 | denotes | TE |
| T6878 | 1789-1791 | http://identifiers.org/uniprot/Q4TU48 | denotes | TE |
| T5871 | 1789-1791 | http://identifiers.org/uniprot/Q10SH0 | denotes | TE |
| M_0 | 353-362 | hunflair:NA:Species | denotes | organisms |
| M_1 | 1203-1206 | hunflair:NA:Chemical | denotes | ABA |
| M_2 | 1296-1299 | hunflair:NA:Chemical | denotes | ABA |
| M_3 | 1474-1478 | hunflair:NA:Gene | denotes | ddm1 |
| M_4 | 1188-1201 | hunflair:NA:Chemical | denotes | abscisic acid |
| M_5 | 1244-1259 | hunflair:NA:Gene | denotes | TE-lincRNA11195 |
| M_6 | 748-752 | hunflair:NA:Species | denotes | rice |
| M_7 | 968-972 | hunflair:NA:Species | denotes | rice |
| M_8 | 757-762 | hunflair:NA:Species | denotes | maize |
| M_9 | 977-982 | hunflair:NA:Species | denotes | maize |
| M_10 | 735-746 | hunflair:NA:Species | denotes | Arabidopsis |
| M_11 | 1232-1243 | hunflair:NA:Species | denotes | Arabidopsis |
| M_12 | 1433-1444 | hunflair:NA:Species | denotes | Arabidopsis |
OryzaGP_2021_v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 794-796 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T2 | 818-820 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T3 | 846-848 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T4 | 998-1000 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T5 | 1048-1050 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T6 | 1079-1081 | http://identifiers.org/oryzabase.gene/319 | denotes | RT |
| T7 | 1157-1159 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T8 | 1203-1206 | http://identifiers.org/oryzabase.gene/6003 | denotes | ABA |
| T9 | 1244-1246 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T10 | 1296-1299 | http://identifiers.org/oryzabase.gene/6003 | denotes | ABA |
| T11 | 1506-1508 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T12 | 1694-1696 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T13 | 1789-1791 | http://identifiers.org/oryzabase.gene/9825 | denotes | TE |
| T99982 | 794-796 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T8874 | 818-820 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T92089 | 846-848 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T23282 | 998-1000 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T8741 | 1048-1050 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T33731 | 1157-1159 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T29435 | 1244-1246 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T43839 | 1506-1508 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T45890 | 1694-1696 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
| T30213 | 1789-1791 | http://identifiers.org/rapdb.locus/Os03g0123300 | denotes | TE |
OryzaGP_2022
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 932-947 | http://identifiers.org/oryzabase.gene/2983 | denotes | retrotransposon |
OryzaGP_2021_FLAIR
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 353-362 | hunflair:NA:Species | denotes | organisms |
| M_1 | 1203-1206 | hunflair:NA:Chemical | denotes | ABA |
| M_2 | 1296-1299 | hunflair:NA:Chemical | denotes | ABA |
| M_3 | 1474-1478 | hunflair:NA:Gene | denotes | ddm1 |
| M_4 | 1188-1201 | hunflair:NA:Chemical | denotes | abscisic acid |
| M_5 | 1244-1259 | hunflair:NA:Gene | denotes | TE-lincRNA11195 |
| M_6 | 748-752 | hunflair:NA:Species | denotes | rice |
| M_7 | 968-972 | hunflair:NA:Species | denotes | rice |
| M_8 | 757-762 | hunflair:NA:Species | denotes | maize |
| M_9 | 977-982 | hunflair:NA:Species | denotes | maize |
| M_10 | 735-746 | hunflair:NA:Species | denotes | Arabidopsis |
| M_11 | 1232-1243 | hunflair:NA:Species | denotes | Arabidopsis |
| M_12 | 1433-1444 | hunflair:NA:Species | denotes | Arabidopsis |
OryzaGP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 932-947 | gene | denotes | retrotransposon |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-98 | Sentence | denotes | Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in plants. |
| T2 | 99-228 | Sentence | denotes | Noncoding RNAs have been extensively described in plant and animal transcriptomes by using high-throughput sequencing technology. |
| T3 | 229-437 | Sentence | denotes | Of these noncoding RNAs, a growing number of long intergenic noncoding RNAs (lincRNAs) have been described in multicellular organisms, however the origins and functions of many lincRNAs remain to be explored. |
| T4 | 438-642 | Sentence | denotes | In many eukaryotic genomes, transposable elements (TEs) are widely distributed and often account for large fractions of plant and animal genomes yet the contribution of TEs to lincRNAs is largely unknown. |
| T5 | 643-845 | Sentence | denotes | By using strand-specific RNA-sequencing, we profiled the expression patterns of lincRNAs in Arabidopsis, rice and maize, and identified 47 611 and 398 TE-associated lincRNAs (TE-lincRNAs), respectively. |
| T6 | 846-1010 | Sentence | denotes | TE-lincRNAs were more often derived from retrotransposons than DNA transposons and as retrotransposon copy number in both rice and maize genomes so did TE-lincRNAs. |
| T7 | 1011-1227 | Sentence | denotes | We validated the expression of these TE-lincRNAs by strand-specific RT-PCR and also demonstrated tissue-specific transcription and stress-induced TE-lincRNAs either after salt, abscisic acid (ABA) or cold treatments. |
| T8 | 1228-1384 | Sentence | denotes | For Arabidopsis TE-lincRNA11195, mutants had reduced sensitivity to ABA as demonstrated by longer roots and higher shoot biomass when compared to wild-type. |
| T9 | 1385-1654 | Sentence | denotes | Finally, by altering the chromatin state in the Arabidopsis chromatin remodelling mutant ddm1, unique lincRNAs including TE-lincRNAs were generated from the preceding untranscribed regions and interestingly inherited in a wild-type background in subsequent generations. |
| T10 | 1655-1850 | Sentence | denotes | Our findings not only demonstrate that TE-associated lincRNAs play important roles in plant abiotic stress responses but lincRNAs and TE-lincRNAs might act as an adaptive reservoir in eukaryotes. |