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OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 67-80 http://identifiers.org/oryzabase.gene/444 denotes oryzacystatin
T2 111-124 http://identifiers.org/oryzabase.gene/444 denotes oryzacystatin
T3 126-128 http://identifiers.org/oryzabase.gene/444 denotes Oc
T4 133-152 http://identifiers.org/oryzabase.gene/6135 denotes cysteine proteinase
T5 164-172 http://identifiers.org/oryzabase.gene/18126 denotes cystatin
T6 164-172 http://identifiers.org/oryzabase.gene/12115 denotes cystatin
T7 316-318 http://identifiers.org/oryzabase.gene/444 denotes oc
T8 352-355 http://identifiers.org/oryzabase.gene/12401 denotes map
T9 546-548 http://identifiers.org/oryzabase.gene/444 denotes oc
T10 642-644 http://identifiers.org/oryzabase.gene/870 denotes bp
T11 707-709 http://identifiers.org/oryzabase.gene/870 denotes bp
T12 786-788 http://identifiers.org/oryzabase.gene/726 denotes S1
T13 865-867 http://identifiers.org/oryzabase.gene/870 denotes bp
T14 913-916 http://identifiers.org/oryzabase.gene/8094 denotes CAT
T15 1182-1184 http://identifiers.org/oryzabase.gene/444 denotes oc
T16 1282-1290 http://identifiers.org/oryzabase.gene/18126 denotes cystatin
T17 1282-1290 http://identifiers.org/oryzabase.gene/12115 denotes cystatin
T18 1292-1300 http://identifiers.org/oryzabase.gene/18126 denotes cystatin
T19 1292-1300 http://identifiers.org/oryzabase.gene/12115 denotes cystatin
T81077 67-80 http://identifiers.org/ricegap/LOC_Os01g58890 denotes oryzacystatin
T44423 111-124 http://identifiers.org/ricegap/LOC_Os01g58890 denotes oryzacystatin
T19428 126-128 http://identifiers.org/ricegap/LOC_Os01g58890 denotes Oc
T48880 133-162 http://identifiers.org/ricegap/LOC_Os01g16430 denotes cysteine proteinase inhibitor
T85807 164-172 http://identifiers.org/ricegap/LOC_Os03g11180 denotes cystatin
T90026 164-172 http://identifiers.org/ricegap/LOC_Os01g68660 denotes cystatin
T17584 164-172 http://identifiers.org/ricegap/LOC_Os01g16430 denotes cystatin
T85677 316-318 http://identifiers.org/ricegap/LOC_Os01g58890 denotes oc
T41378 352-355 http://identifiers.org/ricegap/LOC_Os08g40620 denotes map
T76902 546-548 http://identifiers.org/ricegap/LOC_Os01g58890 denotes oc
T29931 913-916 http://identifiers.org/ricegap/LOC_Os02g02400 denotes CAT
T38967 1182-1184 http://identifiers.org/ricegap/LOC_Os01g58890 denotes oc
T35847 1282-1290 http://identifiers.org/ricegap/LOC_Os03g11180 denotes cystatin
T69431 1282-1290 http://identifiers.org/ricegap/LOC_Os01g68660 denotes cystatin
T95428 1282-1290 http://identifiers.org/ricegap/LOC_Os01g16430 denotes cystatin
T66829 1292-1300 http://identifiers.org/ricegap/LOC_Os03g11180 denotes cystatin
T56709 1292-1300 http://identifiers.org/ricegap/LOC_Os01g68660 denotes cystatin
T22385 1292-1300 http://identifiers.org/ricegap/LOC_Os01g16430 denotes cystatin
T61373 67-80 http://identifiers.org/rapdb.locus/Os01g0803200 denotes oryzacystatin
T24345 111-124 http://identifiers.org/rapdb.locus/Os01g0803200 denotes oryzacystatin
T39247 126-128 http://identifiers.org/rapdb.locus/Os01g0803200 denotes Oc
T57346 133-162 http://identifiers.org/rapdb.locus/Os01g0270100 denotes cysteine proteinase inhibitor
T57979 164-172 http://identifiers.org/rapdb.locus/Os03g0210200 denotes cystatin
T79819 164-172 http://identifiers.org/rapdb.locus/Os01g0915200 denotes cystatin
T99063 164-172 http://identifiers.org/rapdb.locus/Os01g0270100 denotes cystatin
T91816 316-318 http://identifiers.org/rapdb.locus/Os01g0803200 denotes oc
T45439 352-355 http://identifiers.org/rapdb.locus/Os08g0518100 denotes map
T96849 546-548 http://identifiers.org/rapdb.locus/Os01g0803200 denotes oc
T21433 913-916 http://identifiers.org/rapdb.locus/Os02g0115700 denotes CAT
T84100 1182-1184 http://identifiers.org/rapdb.locus/Os01g0803200 denotes oc
T47408 1282-1290 http://identifiers.org/rapdb.locus/Os03g0210200 denotes cystatin
T18939 1282-1290 http://identifiers.org/rapdb.locus/Os01g0915200 denotes cystatin
T15216 1282-1290 http://identifiers.org/rapdb.locus/Os01g0270100 denotes cystatin
T49593 1292-1300 http://identifiers.org/rapdb.locus/Os03g0210200 denotes cystatin
T65653 1292-1300 http://identifiers.org/rapdb.locus/Os01g0915200 denotes cystatin
T99335 1292-1300 http://identifiers.org/rapdb.locus/Os01g0270100 denotes cystatin
T57716 67-80 http://identifiers.org/uniprot/A5HMM9 denotes oryzacystatin
T49202 111-124 http://identifiers.org/uniprot/A5HMM9 denotes oryzacystatin
T95094 126-128 http://identifiers.org/uniprot/A5HMM9 denotes Oc
T50646 164-172 http://identifiers.org/refseq/NP_001146946.1 denotes cystatin
T35298 164-172 http://identifiers.org/refseq/NP_001105948.1 denotes cystatin
T5065 913-916 http://identifiers.org/uniprot/B8AGH7 denotes CAT
T37041 1282-1290 http://identifiers.org/refseq/NP_001146946.1 denotes cystatin
T8766 1282-1290 http://identifiers.org/refseq/NP_001105948.1 denotes cystatin
T97033 1292-1300 http://identifiers.org/refseq/NP_001146946.1 denotes cystatin
T25255 1292-1300 http://identifiers.org/refseq/NP_001105948.1 denotes cystatin
M_0 1229-1234 hunflair:NA:Species denotes human
M_1 1267-1272 hunflair:NA:Species denotes human
M_2 850-853 hunflair:NA:Gene denotes tsp
M_3 984-987 hunflair:NA:Gene denotes tsp
M_4 1039-1042 hunflair:NA:Gene denotes tsp
M_5 913-916 hunflair:NA:Gene denotes CAT
M_6 546-553 hunflair:NA:Gene denotes oc gene
M_7 1182-1189 hunflair:NA:Gene denotes oc gene
M_8 133-141 hunflair:NA:Chemical denotes cysteine
M_9 133-152 hunflair:NA:Gene denotes cysteine proteinase
M_10 676-682 hunflair:NA:Chemical denotes Asp-39
M_11 177-181 hunflair:NA:Species denotes rice
M_12 273-277 hunflair:NA:Species denotes rice
M_13 665-671 hunflair:NA:Chemical denotes Ala-38
M_14 1292-1302 hunflair:NA:Gene denotes cystatin S
M_15 126-128 hunflair:NA:Gene denotes Oc
M_16 316-323 hunflair:NA:Gene denotes oc cDNA
M_17 786-797 hunflair:NA:Gene denotes S1 nuclease
M_18 1235-1244 hunflair:NA:Gene denotes kininogen
M_19 67-80 hunflair:NA:Gene denotes oryzacystatin
M_20 111-124 hunflair:NA:Gene denotes oryzacystatin
M_21 164-172 hunflair:NA:Gene denotes cystatin
M_22 1282-1290 hunflair:NA:Gene denotes cystatin
M_23 1292-1300 hunflair:NA:Gene denotes cystatin

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 142-162 http://identifiers.org/oryzabase.gene/6254 denotes proteinase inhibitor
T2 164-172 http://identifiers.org/oryzabase.gene/18126 denotes cystatin
T3 164-172 http://identifiers.org/oryzabase.gene/12115 denotes cystatin
T4 1282-1290 http://identifiers.org/oryzabase.gene/18126 denotes cystatin
T5 1282-1290 http://identifiers.org/oryzabase.gene/12115 denotes cystatin
T6 1292-1300 http://identifiers.org/oryzabase.gene/18126 denotes cystatin
T7 1292-1300 http://identifiers.org/oryzabase.gene/12115 denotes cystatin

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 126-128 http://identifiers.org/oryzabase.gene/444 denotes Oc
T2 786-788 http://identifiers.org/oryzabase.gene/726 denotes S1
T3 913-916 http://identifiers.org/oryzabase.gene/8094 denotes CAT
T82937 126-128 http://identifiers.org/rapdb.locus/Os01g0803200 denotes Oc
T961 913-916 http://identifiers.org/rapdb.locus/Os02g0115700 denotes CAT

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 1229-1234 hunflair:NA:Species denotes human
M_1 1267-1272 hunflair:NA:Species denotes human
M_2 850-853 hunflair:NA:Gene denotes tsp
M_3 984-987 hunflair:NA:Gene denotes tsp
M_4 1039-1042 hunflair:NA:Gene denotes tsp
M_5 913-916 hunflair:NA:Gene denotes CAT
M_6 546-553 hunflair:NA:Gene denotes oc gene
M_7 1182-1189 hunflair:NA:Gene denotes oc gene
M_8 133-141 hunflair:NA:Chemical denotes cysteine
M_9 133-152 hunflair:NA:Gene denotes cysteine proteinase
M_10 676-682 hunflair:NA:Chemical denotes Asp-39
M_11 177-181 hunflair:NA:Species denotes rice
M_12 273-277 hunflair:NA:Species denotes rice
M_13 665-671 hunflair:NA:Chemical denotes Ala-38
M_14 1292-1302 hunflair:NA:Gene denotes cystatin S
M_15 126-128 hunflair:NA:Gene denotes Oc
M_16 316-323 hunflair:NA:Gene denotes oc cDNA
M_17 786-797 hunflair:NA:Gene denotes S1 nuclease
M_18 1235-1244 hunflair:NA:Gene denotes kininogen
M_19 67-80 hunflair:NA:Gene denotes oryzacystatin
M_20 111-124 hunflair:NA:Gene denotes oryzacystatin
M_21 164-172 hunflair:NA:Gene denotes cystatin
M_22 1282-1290 hunflair:NA:Gene denotes cystatin
M_23 1292-1300 hunflair:NA:Gene denotes cystatin

OryzaGP

Id Subject Object Predicate Lexical cue
T1 1282-1282 gene denotes

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-81 Sentence denotes Cloning and sequence analysis of the genomic DNA fragment encoding oryzacystatin.
T2 82-335 Sentence denotes A genomic DNA clone encoding oryzacystatin (Oc), a cysteine proteinase inhibitor (cystatin) of rice, was isolated from a lambda EMBL3 phage library constructed with Sau3AI partial digests of rice chromosomal DNA, by screening with an oc cDNA as a probe.
T3 336-541 Sentence denotes The restriction map of the isolated DNA fragment was consistent with the pattern of the genomic Southern-blot analysis using a cDNA probe, and consequently, the gene is considered to be a single-copy gene.
T4 542-619 Sentence denotes The oc gene is about 1.4 kb long and composed of three exons and two introns.
T5 620-683 Sentence denotes The first intron (336 bp) intervenes between Ala-38 and Asp-39.
T6 684-785 Sentence denotes The second intron (372 bp) exists in the 3'-noncoding region at the G residue next to the stop codon.
T7 786-904 Sentence denotes S1 nuclease mapping showed the major transcription start point (tsp) at A, 104 bp upstream from the start codon (ATG).
T8 905-988 Sentence denotes Typical CAT and TATA box sequences were found in the 5'-upstream region of the tsp.
T9 989-1152 Sentence denotes The nucleotide sequences around the TATA box, the tsp, the start codon, and the stop codon essentially matched the consensus sequences of other higher plant genes.
T10 1153-1318 Sentence denotes The intron boundaries of the oc gene were quite different from those of the human kininogen-encoding gene and the human salivary cystatin (cystatin S)-encoding gene.