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PubMed:28057753 JSONTXT

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Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 518-523 http://purl.obolibrary.org/obo/MAT_0000036 denotes heart
T2 620-626 http://purl.obolibrary.org/obo/MAT_0000040 denotes tongue

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-153 Sentence denotes A Novel Kleefstra Syndrome-associated Variant That Affects the Conserved TPLX Motif within the Ankyrin Repeat of EHMT1 Leads to Abnormal Protein Folding.
TextSentencer_T2 154-217 Sentence denotes Kleefstra syndrome (KS) (Mendelian Inheritance in Man (MIM) no.
TextSentencer_T3 218-379 Sentence denotes 610253), also known as 9q34 deletion syndrome, is an autosomal dominant disorder caused by haploinsufficiency of euchromatic histone methyltransferase-1 (EHMT1).
TextSentencer_T4 380-644 Sentence denotes The clinical phenotype of KS includes moderate to severe intellectual disability with absent speech, hypotonia, brachycephaly, congenital heart defects, and dysmorphic facial features with hypertelorism, synophrys, macroglossia, protruding tongue, and prognathism.
TextSentencer_T5 645-739 Sentence denotes Only a few cases of de novo missense mutations in EHMT1 giving rise to KS have been described.
TextSentencer_T6 740-970 Sentence denotes However, some EHMT1 variants have been described in individuals presenting with autism spectrum disorder or mild intellectual disability, suggesting that the phenotypic spectrum resulting from EHMT1 alterations may be quite broad.
TextSentencer_T7 971-1432 Sentence denotes In this report, we describe two unrelated patients with complex medical histories consistent with KS in whom next generation sequencing identified the same novel c.2426C>T (p.P809L) missense variant in EHMT1 To examine the functional significance of this novel variant, we performed molecular dynamics simulations of the wild type and p.P809L variant, which predicted that the latter would have a propensity to misfold, leading to abnormal histone mark binding.
TextSentencer_T8 1433-1556 Sentence denotes Recombinant EHMT1 p.P809L was also studied using far UV circular dichroism spectroscopy and intrinsic protein fluorescence.
TextSentencer_T9 1557-1772 Sentence denotes These functional studies confirmed the model-based hypotheses and provided evidence for protein misfolding and aberrant target recognition as the underlying pathogenic mechanism for this novel KS-associated variant.
TextSentencer_T10 1773-1923 Sentence denotes This is the first report to suggest that missense variants in EHMT1 that lead to protein misfolding and disrupted histone mark binding can lead to KS.
T1 0-153 Sentence denotes A Novel Kleefstra Syndrome-associated Variant That Affects the Conserved TPLX Motif within the Ankyrin Repeat of EHMT1 Leads to Abnormal Protein Folding.
T2 154-217 Sentence denotes Kleefstra syndrome (KS) (Mendelian Inheritance in Man (MIM) no.
T3 218-379 Sentence denotes 610253), also known as 9q34 deletion syndrome, is an autosomal dominant disorder caused by haploinsufficiency of euchromatic histone methyltransferase-1 (EHMT1).
T4 380-644 Sentence denotes The clinical phenotype of KS includes moderate to severe intellectual disability with absent speech, hypotonia, brachycephaly, congenital heart defects, and dysmorphic facial features with hypertelorism, synophrys, macroglossia, protruding tongue, and prognathism.
T5 645-739 Sentence denotes Only a few cases of de novo missense mutations in EHMT1 giving rise to KS have been described.
T6 740-970 Sentence denotes However, some EHMT1 variants have been described in individuals presenting with autism spectrum disorder or mild intellectual disability, suggesting that the phenotypic spectrum resulting from EHMT1 alterations may be quite broad.
T7 971-1432 Sentence denotes In this report, we describe two unrelated patients with complex medical histories consistent with KS in whom next generation sequencing identified the same novel c.2426C>T (p.P809L) missense variant in EHMT1 To examine the functional significance of this novel variant, we performed molecular dynamics simulations of the wild type and p.P809L variant, which predicted that the latter would have a propensity to misfold, leading to abnormal histone mark binding.
T8 1433-1556 Sentence denotes Recombinant EHMT1 p.P809L was also studied using far UV circular dichroism spectroscopy and intrinsic protein fluorescence.
T9 1557-1772 Sentence denotes These functional studies confirmed the model-based hypotheses and provided evidence for protein misfolding and aberrant target recognition as the underlying pathogenic mechanism for this novel KS-associated variant.
T10 1773-1923 Sentence denotes This is the first report to suggest that missense variants in EHMT1 that lead to protein misfolding and disrupted histone mark binding can lead to KS.

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 518-523 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
PD-UBERON-AE-B_T2 620-626 http://purl.obolibrary.org/obo/UBERON_0001723 denotes tongue

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 518-523 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
PD-UBERON-AE-B_T2 620-626 http://purl.obolibrary.org/obo/UBERON_0001723 denotes tongue

PubCasesHPO

Id Subject Object Predicate Lexical cue
AB1 437-460 HP:0001249 denotes intellectual disability
AB2 466-479 HP:0001344 denotes absent speech
AB3 492-505 HP:0000248 denotes brachycephaly
AB4 569-582 HP:0000316 denotes hypertelorism
AB5 584-593 HP:0000664 denotes synophrys
AB6 595-607 HP:0000158 denotes macroglossia
AB7 609-626 HP:0010808 denotes protruding tongue
AB8 820-826 HP:0000717 denotes autism
AB9 853-876 HP:0001249 denotes intellectual disability

PubCasesORDO

Id Subject Object Predicate Lexical cue
AB1 154-172 ORDO:261494 denotes Kleefstra syndrome
TI1 8-26 ORDO:261494 denotes Kleefstra Syndrome

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 8-26 Disease denotes Kleefstra Syndrome http://purl.obolibrary.org/obo/MONDO_0012455|http://purl.obolibrary.org/obo/MONDO_0027407
T3 154-172 Disease denotes Kleefstra syndrome http://purl.obolibrary.org/obo/MONDO_0012455|http://purl.obolibrary.org/obo/MONDO_0027407
T5 174-176 Disease denotes KS http://purl.obolibrary.org/obo/MONDO_0012455
T6 241-263 Disease denotes 9q34 deletion syndrome http://purl.obolibrary.org/obo/MONDO_0012455
T7 406-408 Disease denotes KS http://purl.obolibrary.org/obo/MONDO_0012455
T8 437-460 Disease denotes intellectual disability http://purl.obolibrary.org/obo/MONDO_0001071
T9 507-531 Disease denotes congenital heart defects http://purl.obolibrary.org/obo/MONDO_0005453
T10 569-582 Disease denotes hypertelorism http://purl.obolibrary.org/obo/MONDO_0007778
T11 595-607 Disease denotes macroglossia http://purl.obolibrary.org/obo/MONDO_0007927|http://purl.obolibrary.org/obo/MONDO_0015496
T13 716-718 Disease denotes KS http://purl.obolibrary.org/obo/MONDO_0012455
T14 820-844 Disease denotes autism spectrum disorder http://purl.obolibrary.org/obo/MONDO_0005258|http://purl.obolibrary.org/obo/MONDO_0005260
T16 853-876 Disease denotes intellectual disability http://purl.obolibrary.org/obo/MONDO_0001071
T17 1069-1071 Disease denotes KS http://purl.obolibrary.org/obo/MONDO_0012455
T18 1750-1752 Disease denotes KS http://purl.obolibrary.org/obo/MONDO_0012455
T19 1920-1922 Disease denotes KS http://purl.obolibrary.org/obo/MONDO_0012455

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 518-523 Body_part denotes heart http://purl.obolibrary.org/obo/MAT_0000036
T2 620-626 Body_part denotes tongue http://purl.obolibrary.org/obo/MAT_0000040

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 518-523 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948|http://purl.obolibrary.org/obo/UBERON_0007100|http://purl.obolibrary.org/obo/UBERON_0015228|http://purl.obolibrary.org/obo/UBERON_0015230
T5 620-626 Body_part denotes tongue http://purl.obolibrary.org/obo/UBERON_0001723

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 437-460 Phenotype denotes intellectual disability HP:0001249
T2 466-479 Phenotype denotes absent speech HP:0001344
T3 481-490 Phenotype denotes hypotonia HP:0001252
T4 492-505 Phenotype denotes brachycephaly HP:0000248
T5 507-531 Phenotype denotes congenital heart defects HP:0001627
T6 537-563 Phenotype denotes dysmorphic facial features HP:0001999
T7 569-582 Phenotype denotes hypertelorism HP:0000316
T8 584-593 Phenotype denotes synophrys HP:0000664
T9 595-607 Phenotype denotes macroglossia HP:0000158
T10 609-626 Phenotype denotes protruding tongue HP:0010808
T11 632-643 Phenotype denotes prognathism HP:0000303
T12 820-844 Phenotype denotes autism spectrum disorder HP:0000729
T13 853-876 Phenotype denotes intellectual disability HP:0001249