PubMed:27959387
Annnotations
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-89 | Sentence | denotes | Long-term exposure of MCF-7 breast cancer cells to ethanol stimulates oncogenic features. |
| T2 | 90-145 | Sentence | denotes | Alcohol consumption is a risk factor for breast cancer. |
| T3 | 146-270 | Sentence | denotes | Little is known regarding the mechanism, although it is assumed that acetaldehyde or estrogen mediated pathways play a role. |
| T4 | 271-491 | Sentence | denotes | We previously showed that long-term exposure to 2.5 mM ethanol (blood alcohol ~0.012%) of MCF-12A, a human normal epithelial breast cell line, induced epithelial mesenchymal transition (EMT) and oncogenic transformation. |
| T5 | 492-710 | Sentence | denotes | In this study, we investigated in the human breast cancer cell line MCF-7, whether a similar exposure to ethanol at concentrations ranging up to peak blood levels in heavy drinkers would increase malignant progression. |
| T6 | 711-943 | Sentence | denotes | Short-term (1-week) incubation to ethanol at as low as 1-5 mM (corresponding to blood alcohol concentration of ~0.0048-0.024%) upregulated the stem cell related proteins Oct4 and Nanog, but they were reduced after exposure at 25 mM. |
| T7 | 944-1071 | Sentence | denotes | Long-term (4-week) exposure to 25 mM ethanol upregulated the Oct4 and Nanog proteins, as well as the malignancy marker Ceacam6. |
| T8 | 1072-1198 | Sentence | denotes | DNA microarray analysis in cells exposed for 1 week showed upregulated expression of metallothionein genes, particularly MT1X. |
| T9 | 1199-1402 | Sentence | denotes | Long-term exposure upregulated expression of some malignancy related genes (STEAP4, SERPINA3, SAMD9, GDF15, KRT15, ITGB6, TP63, and PGR, as well as the CEACAM, interferon related, and HLA gene families). |
| T10 | 1403-1451 | Sentence | denotes | Some of these findings were validated by RT-PCR. |
| T11 | 1452-1642 | Sentence | denotes | A similar treatment also modulated numerous microRNAs (miRs) including one regulator of Oct4 as well as miRs involved in oncogenesis and/or malignancy, with only a few estrogen-induced miRs. |
| T12 | 1643-1777 | Sentence | denotes | Long-term 25 mM ethanol also induced a 5.6-fold upregulation of anchorage-independent growth, an indicator of malignant-like features. |
| T13 | 1778-1865 | Sentence | denotes | Exposure to acetaldehyde resulted in little or no effect comparable to that of ethanol. |
| T14 | 1866-2084 | Sentence | denotes | The previously shown alcohol induction of oncogenic transformation of normal breast cells is now complemented by the current results suggesting alcohol's potential involvement in malignant progression of breast cancer. |
LitCoin-entities-OrganismTaxon-PD
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 22-25 | OrganismTaxon | denotes | MCF | NCBItxid:11785 |
| T2 | 361-364 | OrganismTaxon | denotes | MCF | NCBItxid:11785 |
| T3 | 372-377 | OrganismTaxon | denotes | human | NCBItxid:9606 |
| T4 | 530-535 | OrganismTaxon | denotes | human | NCBItxid:9606 |
| T5 | 560-563 | OrganismTaxon | denotes | MCF | NCBItxid:11785 |
| T6 | 1740-1749 | OrganismTaxon | denotes | indicator | NCBItxid:189528 |
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 11933 | 22-27 | CellLine | denotes | MCF-7 | NCBITaxon:9606 |
| 11934 | 28-41 | DiseaseOrPhenotypicFeature | denotes | breast cancer | MESH:D001943 |
| 11935 | 51-58 | ChemicalEntity | denotes | ethanol | MESH:D000431 |
| 11936 | 90-97 | ChemicalEntity | denotes | Alcohol | MESH:D000438 |
| 11937 | 131-144 | DiseaseOrPhenotypicFeature | denotes | breast cancer | MESH:D001943 |
| 11938 | 215-227 | ChemicalEntity | denotes | acetaldehyde | MESH:D000079 |
| 11939 | 231-239 | ChemicalEntity | denotes | estrogen | MESH:D004967 |
| 11940 | 326-333 | ChemicalEntity | denotes | ethanol | MESH:D000431 |
| 11941 | 341-348 | ChemicalEntity | denotes | alcohol | MESH:D000438 |
| 11942 | 361-368 | CellLine | denotes | MCF-12A | NCBITaxon:9606 |
| 11943 | 372-377 | OrganismTaxon | denotes | human | NCBITaxon:9606 |
| 11944 | 530-535 | OrganismTaxon | denotes | human | NCBITaxon:9606 |
| 11945 | 536-549 | DiseaseOrPhenotypicFeature | denotes | breast cancer | MESH:D001943 |
| 11946 | 560-565 | CellLine | denotes | MCF-7 | NCBITaxon:9606 |
| 11947 | 597-604 | ChemicalEntity | denotes | ethanol | MESH:D000431 |
| 11948 | 745-752 | ChemicalEntity | denotes | ethanol | MESH:D000431 |
| 11949 | 797-804 | ChemicalEntity | denotes | alcohol | MESH:D000438 |
| 11950 | 881-885 | GeneOrGeneProduct | denotes | Oct4 | NCBIGene:5460 |
| 11951 | 890-895 | GeneOrGeneProduct | denotes | Nanog | NCBIGene:79923 |
| 11952 | 981-988 | ChemicalEntity | denotes | ethanol | MESH:D000431 |
| 11953 | 1005-1009 | GeneOrGeneProduct | denotes | Oct4 | NCBIGene:5460 |
| 11954 | 1014-1019 | GeneOrGeneProduct | denotes | Nanog | NCBIGene:79923 |
| 11955 | 1045-1055 | DiseaseOrPhenotypicFeature | denotes | malignancy | MESH:D009369 |
| 11956 | 1063-1070 | GeneOrGeneProduct | denotes | Ceacam6 | NCBIGene:4680 |
| 11957 | 1157-1172 | GeneOrGeneProduct | denotes | metallothionein | NCBIGene:4501 |
| 11958 | 1193-1197 | GeneOrGeneProduct | denotes | MT1X | NCBIGene:4501 |
| 11959 | 1249-1259 | DiseaseOrPhenotypicFeature | denotes | malignancy | MESH:D009369 |
| 11960 | 1275-1281 | GeneOrGeneProduct | denotes | STEAP4 | NCBIGene:79689 |
| 11961 | 1283-1291 | GeneOrGeneProduct | denotes | SERPINA3 | NCBIGene:12 |
| 11962 | 1293-1298 | GeneOrGeneProduct | denotes | SAMD9 | NCBIGene:54809 |
| 11963 | 1300-1305 | GeneOrGeneProduct | denotes | GDF15 | NCBIGene:9518 |
| 11964 | 1307-1312 | GeneOrGeneProduct | denotes | KRT15 | NCBIGene:3866 |
| 11965 | 1314-1319 | GeneOrGeneProduct | denotes | ITGB6 | NCBIGene:3694 |
| 11966 | 1321-1325 | GeneOrGeneProduct | denotes | TP63 | NCBIGene:8626 |
| 11967 | 1331-1334 | GeneOrGeneProduct | denotes | PGR | NCBIGene:5241 |
| 11968 | 1351-1357 | GeneOrGeneProduct | denotes | CEACAM | NCBIGene:4680 |
| 11969 | 1359-1369 | GeneOrGeneProduct | denotes | interferon | NCBIGene:282617 |
| 11970 | 1383-1386 | GeneOrGeneProduct | denotes | HLA | NCBIGene:3123 |
| 11971 | 1540-1544 | GeneOrGeneProduct | denotes | Oct4 | NCBIGene:5460 |
| 11972 | 1592-1602 | DiseaseOrPhenotypicFeature | denotes | malignancy | MESH:D009369 |
| 11973 | 1620-1628 | ChemicalEntity | denotes | estrogen | MESH:D004967 |
| 11974 | 1659-1666 | ChemicalEntity | denotes | ethanol | MESH:D000431 |
| 11975 | 1790-1802 | ChemicalEntity | denotes | acetaldehyde | MESH:D000079 |
| 11976 | 1857-1864 | ChemicalEntity | denotes | ethanol | MESH:D000431 |
| 11977 | 1887-1894 | ChemicalEntity | denotes | alcohol | MESH:D000438 |
| 11978 | 2010-2017 | ChemicalEntity | denotes | alcohol | MESH:D000438 |
| 11979 | 2070-2083 | DiseaseOrPhenotypicFeature | denotes | breast cancer | MESH:D001943 |
LitCoin_Mondo
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 28-41 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254 |
| T2 | 35-41 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
| T3 | 131-144 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254 |
| T4 | 138-144 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
| T5 | 536-549 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254 |
| T6 | 543-549 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
| T7 | 2070-2083 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254 |
| T8 | 2077-2083 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
LitCoin-SeqVar
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 364-368 | SequenceVariant | denotes | -12A |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-4 | GeneOrGeneProduct | denotes | Long |
| T2 | 5-9 | GeneOrGeneProduct | denotes | term |
| T3 | 42-47 | GeneOrGeneProduct | denotes | cells |
| T4 | 70-79 | GeneOrGeneProduct | denotes | oncogenic |
| T5 | 90-97 | GeneOrGeneProduct | denotes | Alcohol |
| T6 | 120-126 | GeneOrGeneProduct | denotes | factor |
| T7 | 146-152 | GeneOrGeneProduct | denotes | Little |
| T8 | 240-248 | GeneOrGeneProduct | denotes | mediated |
| T9 | 297-301 | GeneOrGeneProduct | denotes | long |
| T10 | 302-306 | GeneOrGeneProduct | denotes | term |
| T11 | 316-322 | GeneOrGeneProduct | denotes | to 2.5 |
| T12 | 341-348 | GeneOrGeneProduct | denotes | alcohol |
| T13 | 403-407 | GeneOrGeneProduct | denotes | cell |
| T14 | 408-412 | GeneOrGeneProduct | denotes | line |
| T15 | 414-421 | GeneOrGeneProduct | denotes | induced |
| T16 | 466-475 | GeneOrGeneProduct | denotes | oncogenic |
| T17 | 476-490 | GeneOrGeneProduct | denotes | transformation |
| T18 | 550-554 | GeneOrGeneProduct | denotes | cell |
| T19 | 555-559 | GeneOrGeneProduct | denotes | line |
| T20 | 577-584 | GeneOrGeneProduct | denotes | similar |
| T21 | 623-630 | GeneOrGeneProduct | denotes | ranging |
| T22 | 717-721 | GeneOrGeneProduct | denotes | term |
| T23 | 797-804 | GeneOrGeneProduct | denotes | alcohol |
| T24 | 859-863 | GeneOrGeneProduct | denotes | cell |
| T25 | 864-880 | GeneOrGeneProduct | denotes | related proteins |
| T26 | 881-885 | GeneOrGeneProduct | denotes | Oct4 |
| T27 | 890-895 | GeneOrGeneProduct | denotes | Nanog |
| T28 | 911-918 | GeneOrGeneProduct | denotes | reduced |
| T29 | 944-948 | GeneOrGeneProduct | denotes | Long |
| T30 | 949-953 | GeneOrGeneProduct | denotes | term |
| T31 | 1005-1009 | GeneOrGeneProduct | denotes | Oct4 |
| T32 | 1014-1019 | GeneOrGeneProduct | denotes | Nanog |
| T33 | 1020-1028 | GeneOrGeneProduct | denotes | proteins |
| T34 | 1063-1070 | GeneOrGeneProduct | denotes | Ceacam6 |
| T35 | 1099-1104 | GeneOrGeneProduct | denotes | cells |
| T36 | 1157-1172 | GeneOrGeneProduct | denotes | metallothionein |
| T37 | 1193-1197 | GeneOrGeneProduct | denotes | MT1X |
| T38 | 1199-1203 | GeneOrGeneProduct | denotes | Long |
| T39 | 1204-1208 | GeneOrGeneProduct | denotes | term |
| T40 | 1275-1281 | GeneOrGeneProduct | denotes | STEAP4 |
| T41 | 1283-1291 | GeneOrGeneProduct | denotes | SERPINA3 |
| T42 | 1293-1298 | GeneOrGeneProduct | denotes | SAMD9 |
| T43 | 1300-1305 | GeneOrGeneProduct | denotes | GDF15 |
| T44 | 1307-1312 | GeneOrGeneProduct | denotes | KRT15 |
| T45 | 1314-1319 | GeneOrGeneProduct | denotes | ITGB6 |
| T46 | 1321-1325 | GeneOrGeneProduct | denotes | TP63 |
| T47 | 1331-1334 | GeneOrGeneProduct | denotes | PGR |
| T48 | 1359-1369 | GeneOrGeneProduct | denotes | interferon |
| T49 | 1417-1425 | GeneOrGeneProduct | denotes | findings |
| T50 | 1447-1453 | GeneOrGeneProduct | denotes | PCR. A |
| T51 | 1454-1461 | GeneOrGeneProduct | denotes | similar |
| T52 | 1507-1511 | GeneOrGeneProduct | denotes | miRs |
| T53 | 1527-1536 | GeneOrGeneProduct | denotes | regulator |
| T54 | 1540-1544 | GeneOrGeneProduct | denotes | Oct4 |
| T55 | 1556-1560 | GeneOrGeneProduct | denotes | miRs |
| T56 | 1629-1636 | GeneOrGeneProduct | denotes | induced |
| T57 | 1637-1641 | GeneOrGeneProduct | denotes | miRs |
| T58 | 1643-1647 | GeneOrGeneProduct | denotes | Long |
| T59 | 1648-1652 | GeneOrGeneProduct | denotes | term |
| T60 | 1672-1679 | GeneOrGeneProduct | denotes | induced |
| T61 | 1686-1690 | GeneOrGeneProduct | denotes | fold |
| T62 | 1729-1735 | GeneOrGeneProduct | denotes | growth |
| T63 | 1763-1767 | GeneOrGeneProduct | denotes | like |
| T64 | 1815-1821 | GeneOrGeneProduct | denotes | little |
| T65 | 1887-1894 | GeneOrGeneProduct | denotes | alcohol |
| T66 | 1908-1917 | GeneOrGeneProduct | denotes | oncogenic |
| T67 | 1918-1932 | GeneOrGeneProduct | denotes | transformation |
| T68 | 1950-1955 | GeneOrGeneProduct | denotes | cells |
| T69 | 2010-2019 | GeneOrGeneProduct | denotes | alcohol's |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 5-9 | GeneOrGeneProduct | denotes | term |
| T2 | 90-97 | GeneOrGeneProduct | denotes | Alcohol |
| T3 | 120-126 | GeneOrGeneProduct | denotes | factor |
| T4 | 146-152 | GeneOrGeneProduct | denotes | Little |
| T5 | 302-306 | GeneOrGeneProduct | denotes | term |
| T6 | 341-348 | GeneOrGeneProduct | denotes | alcohol |
| T7 | 403-407 | GeneOrGeneProduct | denotes | cell |
| T8 | 550-554 | GeneOrGeneProduct | denotes | cell |
| T9 | 577-584 | GeneOrGeneProduct | denotes | similar |
| T10 | 717-721 | GeneOrGeneProduct | denotes | term |
| T11 | 797-804 | GeneOrGeneProduct | denotes | alcohol |
| T12 | 859-863 | GeneOrGeneProduct | denotes | cell |
| T13 | 864-880 | GeneOrGeneProduct | denotes | related proteins |
| T14 | 881-885 | GeneOrGeneProduct | denotes | Oct4 |
| T15 | 890-895 | GeneOrGeneProduct | denotes | Nanog |
| T16 | 911-918 | GeneOrGeneProduct | denotes | reduced |
| T17 | 949-953 | GeneOrGeneProduct | denotes | term |
| T18 | 1005-1009 | GeneOrGeneProduct | denotes | Oct4 |
| T19 | 1014-1019 | GeneOrGeneProduct | denotes | Nanog |
| T20 | 1063-1070 | GeneOrGeneProduct | denotes | Ceacam6 |
| T21 | 1157-1172 | GeneOrGeneProduct | denotes | metallothionein |
| T22 | 1193-1197 | GeneOrGeneProduct | denotes | MT1X |
| T23 | 1204-1208 | GeneOrGeneProduct | denotes | term |
| T24 | 1275-1281 | GeneOrGeneProduct | denotes | STEAP4 |
| T25 | 1283-1291 | GeneOrGeneProduct | denotes | SERPINA3 |
| T26 | 1293-1298 | GeneOrGeneProduct | denotes | SAMD9 |
| T27 | 1300-1305 | GeneOrGeneProduct | denotes | GDF15 |
| T28 | 1307-1312 | GeneOrGeneProduct | denotes | KRT15 |
| T29 | 1314-1319 | GeneOrGeneProduct | denotes | ITGB6 |
| T30 | 1321-1325 | GeneOrGeneProduct | denotes | TP63 |
| T31 | 1359-1369 | GeneOrGeneProduct | denotes | interferon |
| T32 | 1447-1453 | GeneOrGeneProduct | denotes | PCR. A |
| T33 | 1454-1461 | GeneOrGeneProduct | denotes | similar |
| T34 | 1527-1536 | GeneOrGeneProduct | denotes | regulator |
| T35 | 1540-1544 | GeneOrGeneProduct | denotes | Oct4 |
| T36 | 1648-1652 | GeneOrGeneProduct | denotes | term |
| T37 | 1686-1690 | GeneOrGeneProduct | denotes | fold |
| T38 | 1729-1735 | GeneOrGeneProduct | denotes | growth |
| T39 | 1763-1767 | GeneOrGeneProduct | denotes | like |
| T40 | 1815-1821 | GeneOrGeneProduct | denotes | little |
| T41 | 1887-1894 | GeneOrGeneProduct | denotes | alcohol |
LitCoin-Chemical-MeSH-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 51-58 | ChemicalEntity | denotes | ethanol | D000431|http://purl.obolibrary.org/obo/CHEBI_16236 |
| T3 | 90-97 | ChemicalEntity | denotes | Alcohol | http://purl.obolibrary.org/obo/CHEBI_30879 |
| T4 | 215-227 | ChemicalEntity | denotes | acetaldehyde | D000079|http://purl.obolibrary.org/obo/CHEBI_15343 |
| T6 | 231-239 | ChemicalEntity | denotes | estrogen | ChemicalEntity |
| T7 | 326-333 | ChemicalEntity | denotes | ethanol | D000431|http://purl.obolibrary.org/obo/CHEBI_16236 |
| T9 | 341-348 | ChemicalEntity | denotes | alcohol | http://purl.obolibrary.org/obo/CHEBI_30879|http://purl.obolibrary.org/obo/CHEBI_16236|ChemicalEntity |
| T12 | 597-604 | ChemicalEntity | denotes | ethanol | D000431|http://purl.obolibrary.org/obo/CHEBI_16236 |
| T14 | 745-752 | ChemicalEntity | denotes | ethanol | D000431|http://purl.obolibrary.org/obo/CHEBI_16236 |
| T16 | 791-818 | ChemicalEntity | denotes | blood alcohol concentration | D000067401 |
| T17 | 981-988 | ChemicalEntity | denotes | ethanol | D000431|http://purl.obolibrary.org/obo/CHEBI_16236 |
| T19 | 1157-1172 | ChemicalEntity | denotes | metallothionein | ChemicalEntity |
| T20 | 1620-1628 | ChemicalEntity | denotes | estrogen | ChemicalEntity |
| T21 | 1659-1666 | ChemicalEntity | denotes | ethanol | D000431|http://purl.obolibrary.org/obo/CHEBI_16236 |
| T23 | 1790-1802 | ChemicalEntity | denotes | acetaldehyde | D000079|http://purl.obolibrary.org/obo/CHEBI_15343 |
| T25 | 1857-1864 | ChemicalEntity | denotes | ethanol | D000431|http://purl.obolibrary.org/obo/CHEBI_16236 |
| T27 | 1887-1894 | ChemicalEntity | denotes | alcohol | http://purl.obolibrary.org/obo/CHEBI_30879|http://purl.obolibrary.org/obo/CHEBI_16236|ChemicalEntity |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T1 | 28-41 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T2 | 131-144 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T3 | 341-348 | DiseaseOrPhenotypicFeature | denotes | alcohol | D000437 |
| T4 | 536-549 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T5 | 688-697 | DiseaseOrPhenotypicFeature | denotes | malignant | D009369 |
| T6 | 797-804 | DiseaseOrPhenotypicFeature | denotes | alcohol | D000437 |
| T7 | 1045-1055 | DiseaseOrPhenotypicFeature | denotes | malignancy | D009369 |
| T8 | 1249-1259 | DiseaseOrPhenotypicFeature | denotes | malignancy | D009369 |
| T9 | 1573-1584 | DiseaseOrPhenotypicFeature | denotes | oncogenesis | D063646 |
| T10 | 1592-1602 | DiseaseOrPhenotypicFeature | denotes | malignancy | D009369 |
| T11 | 1753-1762 | DiseaseOrPhenotypicFeature | denotes | malignant | D009369 |
| T12 | 1887-1894 | DiseaseOrPhenotypicFeature | denotes | alcohol | D000437 |
| T13 | 2045-2054 | DiseaseOrPhenotypicFeature | denotes | malignant | D009369 |
| T14 | 2070-2083 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 881-885 | GeneOrGeneProduct | denotes | Oct4 |
| T2 | 890-895 | GeneOrGeneProduct | denotes | Nanog |
| T3 | 1005-1009 | GeneOrGeneProduct | denotes | Oct4 |
| T4 | 1014-1019 | GeneOrGeneProduct | denotes | Nanog |
| T5 | 1063-1070 | GeneOrGeneProduct | denotes | Ceacam6 |
| T6 | 1157-1172 | GeneOrGeneProduct | denotes | metallothionein |
| T7 | 1193-1197 | GeneOrGeneProduct | denotes | MT1X |
| T8 | 1275-1281 | GeneOrGeneProduct | denotes | STEAP4 |
| T9 | 1283-1291 | GeneOrGeneProduct | denotes | SERPINA3 |
| T10 | 1293-1298 | GeneOrGeneProduct | denotes | SAMD9 |
| T11 | 1300-1305 | GeneOrGeneProduct | denotes | GDF15 |
| T12 | 1307-1312 | GeneOrGeneProduct | denotes | KRT15 |
| T13 | 1314-1319 | GeneOrGeneProduct | denotes | ITGB6 |
| T14 | 1321-1325 | GeneOrGeneProduct | denotes | TP63 |
| T15 | 1447-1453 | GeneOrGeneProduct | denotes | PCR. A |
| T16 | 1540-1544 | GeneOrGeneProduct | denotes | Oct4 |
LitCoin_Mondo_095
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 28-41 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254|0004989 |
| T3 | 131-144 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254|0004989 |
| T5 | 536-549 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254|0004989 |
| T7 | 1045-1055 | DiseaseOrPhenotypicFeature | denotes | malignancy | 0004992 |
| T8 | 1249-1259 | DiseaseOrPhenotypicFeature | denotes | malignancy | 0004992 |
| T9 | 1592-1602 | DiseaseOrPhenotypicFeature | denotes | malignancy | 0004992 |
| T10 | 2070-2083 | DiseaseOrPhenotypicFeature | denotes | breast cancer | 0007254|0004989 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 28-41 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T2 | 131-144 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T3 | 536-549 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T4 | 1045-1055 | DiseaseOrPhenotypicFeature | denotes | malignancy | D009369 |
| T5 | 1249-1259 | DiseaseOrPhenotypicFeature | denotes | malignancy | D009369 |
| T6 | 1573-1584 | DiseaseOrPhenotypicFeature | denotes | oncogenesis | D063646 |
| T7 | 1592-1602 | DiseaseOrPhenotypicFeature | denotes | malignancy | D009369 |
| T8 | 2070-2083 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
LitCoin_CellLine
| Id | Subject | Object | Predicate | Lexical cue | cellosaurus_accession_id |
|---|---|---|---|---|---|
| T1 | 22-27 | CellLine | denotes | MCF-7 | CVCL_0031 |
| T2 | 361-368 | CellLine | denotes | MCF-12A | CVCL_3744 |
| T3 | 560-565 | CellLine | denotes | MCF-7 | CVCL_0031 |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T1 | 28-41 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T2 | 131-144 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T3 | 536-549 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
| T4 | 1045-1055 | DiseaseOrPhenotypicFeature | denotes | malignancy | D009369 |
| T5 | 1249-1259 | DiseaseOrPhenotypicFeature | denotes | malignancy | D009369 |
| T6 | 1592-1602 | DiseaseOrPhenotypicFeature | denotes | malignancy | D009369 |
| T7 | 2070-2083 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 |
LitCoin-NCBITaxon-2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-25 | OrganismTaxon | denotes | MCF |
| T2 | 361-364 | OrganismTaxon | denotes | MCF |
| T3 | 372-377 | OrganismTaxon | denotes | human |
| T4 | 530-535 | OrganismTaxon | denotes | human |
| T5 | 560-563 | OrganismTaxon | denotes | MCF |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label | ID: | cellosaurus_accession_id |
|---|---|---|---|---|---|---|---|
| T3 | 560-565 | CellLine | denotes | MCF-7 | CVCL_0031 | ||
| T2 | 361-368 | CellLine | denotes | MCF-12A | CVCL_3744 | ||
| T1 | 22-27 | CellLine | denotes | MCF-7 | CVCL_0031 | ||
| T27 | 1887-1894 | ChemicalEntity | denotes | alcohol | ChemicalEntity|http://purl.obolibrary.org/obo/CHEBI_16236|http://purl.obolibrary.org/obo/CHEBI_30879 | ||
| T25 | 1857-1864 | ChemicalEntity | denotes | ethanol | http://purl.obolibrary.org/obo/CHEBI_16236|D000431 | ||
| T23 | 1790-1802 | ChemicalEntity | denotes | acetaldehyde | http://purl.obolibrary.org/obo/CHEBI_15343|D000079 | ||
| T21 | 1659-1666 | ChemicalEntity | denotes | ethanol | http://purl.obolibrary.org/obo/CHEBI_16236|D000431 | ||
| T20 | 1620-1628 | ChemicalEntity | denotes | estrogen | ChemicalEntity | ||
| T19 | 1157-1172 | ChemicalEntity | denotes | metallothionein | ChemicalEntity | ||
| T17 | 981-988 | ChemicalEntity | denotes | ethanol | http://purl.obolibrary.org/obo/CHEBI_16236|D000431 | ||
| T16 | 791-818 | ChemicalEntity | denotes | blood alcohol concentration | D000067401 | ||
| T14 | 745-752 | ChemicalEntity | denotes | ethanol | http://purl.obolibrary.org/obo/CHEBI_16236|D000431 | ||
| T12 | 597-604 | ChemicalEntity | denotes | ethanol | http://purl.obolibrary.org/obo/CHEBI_16236|D000431 | ||
| T9 | 341-348 | ChemicalEntity | denotes | alcohol | ChemicalEntity|http://purl.obolibrary.org/obo/CHEBI_16236|http://purl.obolibrary.org/obo/CHEBI_30879 | ||
| T7 | 326-333 | ChemicalEntity | denotes | ethanol | http://purl.obolibrary.org/obo/CHEBI_16236|D000431 | ||
| T6 | 231-239 | ChemicalEntity | denotes | estrogen | ChemicalEntity | ||
| T4 | 215-227 | ChemicalEntity | denotes | acetaldehyde | http://purl.obolibrary.org/obo/CHEBI_15343|D000079 | ||
| T18741 | 90-97 | ChemicalEntity | denotes | Alcohol | http://purl.obolibrary.org/obo/CHEBI_30879 | ||
| T85409 | 51-58 | ChemicalEntity | denotes | ethanol | http://purl.obolibrary.org/obo/CHEBI_16236|D000431 | ||
| T95036 | 1540-1544 | GeneOrGeneProduct | denotes | Oct4 | |||
| T15 | 1447-1453 | GeneOrGeneProduct | denotes | PCR. A | |||
| T89816 | 1321-1325 | GeneOrGeneProduct | denotes | TP63 | |||
| T13 | 1314-1319 | GeneOrGeneProduct | denotes | ITGB6 | |||
| T96687 | 1307-1312 | GeneOrGeneProduct | denotes | KRT15 | |||
| T11 | 1300-1305 | GeneOrGeneProduct | denotes | GDF15 | |||
| T10 | 1293-1298 | GeneOrGeneProduct | denotes | SAMD9 | |||
| T84182 | 1283-1291 | GeneOrGeneProduct | denotes | SERPINA3 | |||
| T8 | 1275-1281 | GeneOrGeneProduct | denotes | STEAP4 | |||
| T10451 | 1193-1197 | GeneOrGeneProduct | denotes | MT1X | |||
| T57624 | 1157-1172 | GeneOrGeneProduct | denotes | metallothionein | |||
| T5 | 1063-1070 | GeneOrGeneProduct | denotes | Ceacam6 | |||
| T48981 | 1014-1019 | GeneOrGeneProduct | denotes | Nanog | |||
| T8348 | 1005-1009 | GeneOrGeneProduct | denotes | Oct4 | |||
| T97123 | 890-895 | GeneOrGeneProduct | denotes | Nanog | |||
| T31100 | 881-885 | GeneOrGeneProduct | denotes | Oct4 | |||
| T56620 | 2070-2083 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 | ||
| T91708 | 1592-1602 | DiseaseOrPhenotypicFeature | denotes | malignancy | D009369 | ||
| T14925 | 1249-1259 | DiseaseOrPhenotypicFeature | denotes | malignancy | D009369 | ||
| T56414 | 1045-1055 | DiseaseOrPhenotypicFeature | denotes | malignancy | D009369 | ||
| T16314 | 536-549 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 | ||
| T86961 | 131-144 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 | ||
| T39798 | 28-41 | DiseaseOrPhenotypicFeature | denotes | breast cancer | D001943 | ||
| T80517 | 560-563 | OrganismTaxon | denotes | MCF | |||
| T77155 | 530-535 | OrganismTaxon | denotes | human | |||
| T15507 | 372-377 | OrganismTaxon | denotes | human | |||
| T17457 | 361-364 | OrganismTaxon | denotes | MCF | |||
| T57809 | 22-25 | OrganismTaxon | denotes | MCF | |||
| T37426 | 364-368 | SequenceVariant | denotes | -12A |