PubMed:27959382
Annnotations
LitCoin-entities-OrganismTaxon-PD
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 94-98 | OrganismTaxon | denotes | mice | NCBItxid:10095|NCBItxid:10088 |
| T3 | 382-392 | OrganismTaxon | denotes | adenovirus | NCBItxid:10535 |
| T4 | 516-520 | OrganismTaxon | denotes | mice | NCBItxid:10095|NCBItxid:10088 |
| T6 | 554-559 | OrganismTaxon | denotes | Mouse | NCBItxid:10090|NCBItxid:10088 |
| T8 | 692-702 | OrganismTaxon | denotes | adenovirus | NCBItxid:10535 |
| T9 | 754-764 | OrganismTaxon | denotes | adenovirus | NCBItxid:10535 |
| T10 | 906-911 | OrganismTaxon | denotes | mouse | NCBItxid:10090|NCBItxid:10088 |
| T12 | 1005-1009 | OrganismTaxon | denotes | mice | NCBItxid:10095|NCBItxid:10088 |
| T14 | 1545-1549 | OrganismTaxon | denotes | mice | NCBItxid:10095|NCBItxid:10088 |
| T16 | 1904-1908 | OrganismTaxon | denotes | mice | NCBItxid:10095|NCBItxid:10088 |
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-99 | Sentence | denotes | Bach1 siRNA attenuates bleomycin-induced pulmonary fibrosis by modulating oxidative stress in mice. |
| T2 | 100-170 | Sentence | denotes | Oxidative stress plays an essential role in inflammation and fibrosis. |
| T3 | 171-338 | Sentence | denotes | Bach1 is an important transcriptional repressor that acts by modulating oxidative stress and represents a potential target in the treatment of pulmonary fibrosis (PF). |
| T4 | 339-553 | Sentence | denotes | In this study, we knocked down Bach1 using adenovirus-mediated small interfering RNA (siRNA) to determine whether the use of Bach1 siRNA is an effective therapeutic strategy in mice with bleomycin (BLM)‑induced PF. |
| T5 | 554-805 | Sentence | denotes | Mouse lung fibroblasts (MLFs) were incubated with transforming growth factor (TGF)-β1 (5 ng/ml) and subsequently infected with recombined adenovirus-like Bach1 siRNA1 and Bach1 siRNA2, while an empty adenovirus vector was used as the negative control. |
| T6 | 806-903 | Sentence | denotes | The selected Bach1 siRNA with higher interference efficiency was used for the animal experiments. |
| T7 | 904-1028 | Sentence | denotes | A mouse model of BLM-induced PF was established, and Bach1 siRNA (1x109 pfu) was administered to the mice via the tail vein. |
| T8 | 1029-1137 | Sentence | denotes | The results revealed that the Bach1 mRNA and protein levels were significantly downregulated by Bach1 siRNA. |
| T9 | 1138-1413 | Sentence | denotes | Furthermore, the MLFs infected with Bach1 siRNA exhibited increased mRNA and protein expression levels of heme oxygenase-1 and glutathione peroxidase 1, but decreased levels of TGF-β1 and interleukin-6 in the cell supernatants compared with the cells exposed to TGF-β1 alone. |
| T10 | 1414-1578 | Sentence | denotes | Bach1 knockdown by siRNA also enhanced the expression of antioxidant factors, but suppressed that of fibrosis‑related cytokines in mice compared with the BLM group. |
| T11 | 1579-1795 | Sentence | denotes | Finally, the inflammatory infiltration of alveolar and interstitial cells and the destruction of lung structure were significantly attenuated in the mide administered Bach1 siRNA compared with those in the BLM group. |
| T12 | 1796-1909 | Sentence | denotes | On the whole, our findings demonstrate that Bach1 siRNA exerts protective effects against BLM-induced PF in mice. |
| T13 | 1910-2009 | Sentence | denotes | Our data may provide the basis for the development of novel targeted therapeutic strategies for PF. |
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 11887 | 0-5 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11888 | 23-32 | ChemicalEntity | denotes | bleomycin | MESH:D001761 |
| 11889 | 41-59 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | MESH:D011658 |
| 11890 | 94-98 | OrganismTaxon | denotes | mice | NCBITaxon:10090 |
| 11891 | 144-156 | DiseaseOrPhenotypicFeature | denotes | inflammation | MESH:D007249 |
| 11892 | 161-169 | DiseaseOrPhenotypicFeature | denotes | fibrosis | MESH:D005355 |
| 11893 | 171-176 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11894 | 314-332 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | MESH:D011658 |
| 11895 | 334-336 | DiseaseOrPhenotypicFeature | denotes | PF | MESH:D011658 |
| 11896 | 370-375 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11897 | 464-469 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11898 | 516-520 | OrganismTaxon | denotes | mice | NCBITaxon:10090 |
| 11899 | 526-535 | ChemicalEntity | denotes | bleomycin | MESH:D001761 |
| 11900 | 537-540 | ChemicalEntity | denotes | BLM | MESH:D001761 |
| 11901 | 550-552 | DiseaseOrPhenotypicFeature | denotes | PF | MESH:D011658 |
| 11902 | 554-559 | OrganismTaxon | denotes | Mouse | NCBITaxon:10090 |
| 11903 | 604-639 | GeneOrGeneProduct | denotes | transforming growth factor (TGF)-β1 | NCBIGene:21803 |
| 11904 | 708-713 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11905 | 725-730 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11906 | 819-824 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11907 | 906-911 | OrganismTaxon | denotes | mouse | NCBITaxon:10090 |
| 11908 | 921-924 | ChemicalEntity | denotes | BLM | MESH:D001761 |
| 11909 | 933-935 | DiseaseOrPhenotypicFeature | denotes | PF | MESH:D011658 |
| 11910 | 957-962 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11911 | 1005-1009 | OrganismTaxon | denotes | mice | NCBITaxon:10090 |
| 11912 | 1059-1064 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11913 | 1125-1130 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11914 | 1174-1179 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11915 | 1244-1260 | GeneOrGeneProduct | denotes | heme oxygenase-1 | NCBIGene:15368 |
| 11916 | 1265-1289 | GeneOrGeneProduct | denotes | glutathione peroxidase 1 | NCBIGene:14775 |
| 11917 | 1315-1321 | GeneOrGeneProduct | denotes | TGF-β1 | NCBIGene:21803 |
| 11918 | 1326-1339 | GeneOrGeneProduct | denotes | interleukin-6 | NCBIGene:16193 |
| 11919 | 1400-1406 | GeneOrGeneProduct | denotes | TGF-β1 | NCBIGene:21803 |
| 11920 | 1414-1419 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11921 | 1471-1490 | GeneOrGeneProduct | denotes | antioxidant factors | NCBIGene:14775|NCBIGene:15368 |
| 11922 | 1515-1523 | DiseaseOrPhenotypicFeature | denotes | fibrosis | MESH:D005355 |
| 11923 | 1545-1549 | OrganismTaxon | denotes | mice | NCBITaxon:10090 |
| 11924 | 1568-1571 | ChemicalEntity | denotes | BLM | MESH:D001761 |
| 11925 | 1592-1604 | DiseaseOrPhenotypicFeature | denotes | inflammatory | MESH:D007249 |
| 11926 | 1746-1751 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11927 | 1785-1788 | ChemicalEntity | denotes | BLM | MESH:D001761 |
| 11928 | 1840-1845 | GeneOrGeneProduct | denotes | Bach1 | NCBIGene:12013 |
| 11929 | 1886-1889 | ChemicalEntity | denotes | BLM | MESH:D001761 |
| 11930 | 1898-1900 | DiseaseOrPhenotypicFeature | denotes | PF | MESH:D011658 |
| 11931 | 1904-1908 | OrganismTaxon | denotes | mice | NCBITaxon:10090 |
| 11932 | 2006-2008 | DiseaseOrPhenotypicFeature | denotes | PF | MESH:D011658 |
LitCoin_Mondo
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 41-59 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | 0002771 |
| T2 | 314-332 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | 0002771 |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-5 | GeneOrGeneProduct | denotes | Bach1 |
| T2 | 12-22 | GeneOrGeneProduct | denotes | attenuates |
| T3 | 33-40 | GeneOrGeneProduct | denotes | induced |
| T4 | 94-98 | GeneOrGeneProduct | denotes | mice |
| T5 | 171-176 | GeneOrGeneProduct | denotes | Bach1 |
| T6 | 193-218 | GeneOrGeneProduct | denotes | transcriptional repressor |
| T7 | 224-228 | GeneOrGeneProduct | denotes | acts |
| T8 | 334-336 | GeneOrGeneProduct | denotes | PF |
| T9 | 357-369 | GeneOrGeneProduct | denotes | knocked down |
| T10 | 370-375 | GeneOrGeneProduct | denotes | Bach1 |
| T11 | 393-401 | GeneOrGeneProduct | denotes | mediated |
| T12 | 402-407 | GeneOrGeneProduct | denotes | small |
| T13 | 435-444 | GeneOrGeneProduct | denotes | determine |
| T14 | 464-469 | GeneOrGeneProduct | denotes | Bach1 |
| T15 | 516-520 | GeneOrGeneProduct | denotes | mice |
| T16 | 542-549 | GeneOrGeneProduct | denotes | induced |
| T17 | 550-552 | GeneOrGeneProduct | denotes | PF |
| T18 | 560-564 | GeneOrGeneProduct | denotes | lung |
| T19 | 617-630 | GeneOrGeneProduct | denotes | growth factor |
| T20 | 646-648 | GeneOrGeneProduct | denotes | ml |
| T21 | 681-691 | GeneOrGeneProduct | denotes | recombined |
| T22 | 703-707 | GeneOrGeneProduct | denotes | like |
| T23 | 708-713 | GeneOrGeneProduct | denotes | Bach1 |
| T24 | 725-730 | GeneOrGeneProduct | denotes | Bach1 |
| T25 | 819-824 | GeneOrGeneProduct | denotes | Bach1 |
| T26 | 925-932 | GeneOrGeneProduct | denotes | induced |
| T27 | 933-935 | GeneOrGeneProduct | denotes | PF |
| T28 | 957-962 | GeneOrGeneProduct | denotes | Bach1 |
| T29 | 1005-1009 | GeneOrGeneProduct | denotes | mice |
| T30 | 1018-1022 | GeneOrGeneProduct | denotes | tail |
| T31 | 1023-1027 | GeneOrGeneProduct | denotes | vein |
| T32 | 1059-1064 | GeneOrGeneProduct | denotes | Bach1 |
| T33 | 1065-1069 | GeneOrGeneProduct | denotes | mRNA |
| T34 | 1074-1081 | GeneOrGeneProduct | denotes | protein |
| T35 | 1125-1130 | GeneOrGeneProduct | denotes | Bach1 |
| T36 | 1174-1179 | GeneOrGeneProduct | denotes | Bach1 |
| T37 | 1206-1210 | GeneOrGeneProduct | denotes | mRNA |
| T38 | 1215-1222 | GeneOrGeneProduct | denotes | protein |
| T39 | 1244-1260 | GeneOrGeneProduct | denotes | heme oxygenase-1 |
| T40 | 1265-1287 | GeneOrGeneProduct | denotes | glutathione peroxidase |
| T41 | 1326-1339 | GeneOrGeneProduct | denotes | interleukin-6 |
| T42 | 1347-1351 | GeneOrGeneProduct | denotes | cell |
| T43 | 1383-1388 | GeneOrGeneProduct | denotes | cells |
| T44 | 1414-1419 | GeneOrGeneProduct | denotes | Bach1 |
| T45 | 1420-1429 | GeneOrGeneProduct | denotes | knockdown |
| T46 | 1483-1490 | GeneOrGeneProduct | denotes | factors |
| T47 | 1545-1549 | GeneOrGeneProduct | denotes | mice |
| T48 | 1647-1652 | GeneOrGeneProduct | denotes | cells |
| T49 | 1676-1680 | GeneOrGeneProduct | denotes | lung |
| T50 | 1710-1720 | GeneOrGeneProduct | denotes | attenuated |
| T51 | 1746-1751 | GeneOrGeneProduct | denotes | Bach1 |
| T52 | 1814-1822 | GeneOrGeneProduct | denotes | findings |
| T53 | 1840-1845 | GeneOrGeneProduct | denotes | Bach1 |
| T54 | 1890-1897 | GeneOrGeneProduct | denotes | induced |
| T55 | 1898-1900 | GeneOrGeneProduct | denotes | PF |
| T56 | 1904-1908 | GeneOrGeneProduct | denotes | mice |
| T57 | 1935-1940 | GeneOrGeneProduct | denotes | basis |
| T58 | 1964-1969 | GeneOrGeneProduct | denotes | novel |
| T59 | 2006-2008 | GeneOrGeneProduct | denotes | PF |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-5 | GeneOrGeneProduct | denotes | Bach1 |
| T2 | 171-176 | GeneOrGeneProduct | denotes | Bach1 |
| T3 | 193-218 | GeneOrGeneProduct | denotes | transcriptional repressor |
| T4 | 370-375 | GeneOrGeneProduct | denotes | Bach1 |
| T5 | 402-407 | GeneOrGeneProduct | denotes | small |
| T6 | 464-469 | GeneOrGeneProduct | denotes | Bach1 |
| T7 | 617-630 | GeneOrGeneProduct | denotes | growth factor |
| T8 | 703-707 | GeneOrGeneProduct | denotes | like |
| T9 | 708-713 | GeneOrGeneProduct | denotes | Bach1 |
| T10 | 725-730 | GeneOrGeneProduct | denotes | Bach1 |
| T11 | 819-824 | GeneOrGeneProduct | denotes | Bach1 |
| T12 | 957-962 | GeneOrGeneProduct | denotes | Bach1 |
| T13 | 1018-1022 | GeneOrGeneProduct | denotes | tail |
| T14 | 1023-1027 | GeneOrGeneProduct | denotes | vein |
| T15 | 1059-1064 | GeneOrGeneProduct | denotes | Bach1 |
| T16 | 1065-1069 | GeneOrGeneProduct | denotes | mRNA |
| T17 | 1074-1081 | GeneOrGeneProduct | denotes | protein |
| T18 | 1125-1130 | GeneOrGeneProduct | denotes | Bach1 |
| T19 | 1174-1179 | GeneOrGeneProduct | denotes | Bach1 |
| T20 | 1206-1210 | GeneOrGeneProduct | denotes | mRNA |
| T21 | 1215-1222 | GeneOrGeneProduct | denotes | protein |
| T22 | 1244-1260 | GeneOrGeneProduct | denotes | heme oxygenase-1 |
| T23 | 1265-1287 | GeneOrGeneProduct | denotes | glutathione peroxidase |
| T24 | 1326-1339 | GeneOrGeneProduct | denotes | interleukin-6 |
| T25 | 1347-1351 | GeneOrGeneProduct | denotes | cell |
| T26 | 1414-1419 | GeneOrGeneProduct | denotes | Bach1 |
| T27 | 1420-1429 | GeneOrGeneProduct | denotes | knockdown |
| T28 | 1710-1720 | GeneOrGeneProduct | denotes | attenuated |
| T29 | 1746-1751 | GeneOrGeneProduct | denotes | Bach1 |
| T30 | 1840-1845 | GeneOrGeneProduct | denotes | Bach1 |
| T31 | 1964-1969 | GeneOrGeneProduct | denotes | novel |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T1 | 41-59 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | D011658 |
| T2 | 144-156 | DiseaseOrPhenotypicFeature | denotes | inflammation | D007249 |
| T3 | 161-169 | DiseaseOrPhenotypicFeature | denotes | fibrosis | D005355 |
| T4 | 314-332 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | D011658 |
| T5 | 334-336 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
| T6 | 550-552 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
| T7 | 933-935 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
| T8 | 1515-1523 | DiseaseOrPhenotypicFeature | denotes | fibrosis | D005355 |
| T9 | 1592-1604 | DiseaseOrPhenotypicFeature | denotes | inflammatory | DISEASE |
| T10 | 1898-1900 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
| T11 | 2006-2008 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-5 | GeneOrGeneProduct | denotes | Bach1 |
| T2 | 171-176 | GeneOrGeneProduct | denotes | Bach1 |
| T3 | 193-218 | GeneOrGeneProduct | denotes | transcriptional repressor |
| T4 | 370-375 | GeneOrGeneProduct | denotes | Bach1 |
| T5 | 464-469 | GeneOrGeneProduct | denotes | Bach1 |
| T6 | 617-630 | GeneOrGeneProduct | denotes | growth factor |
| T7 | 632-635 | GeneOrGeneProduct | denotes | TGF |
| T8 | 708-713 | GeneOrGeneProduct | denotes | Bach1 |
| T9 | 725-730 | GeneOrGeneProduct | denotes | Bach1 |
| T10 | 819-824 | GeneOrGeneProduct | denotes | Bach1 |
| T11 | 957-962 | GeneOrGeneProduct | denotes | Bach1 |
| T12 | 1059-1064 | GeneOrGeneProduct | denotes | Bach1 |
| T13 | 1125-1130 | GeneOrGeneProduct | denotes | Bach1 |
| T14 | 1174-1179 | GeneOrGeneProduct | denotes | Bach1 |
| T15 | 1215-1233 | GeneOrGeneProduct | denotes | protein expression |
| T16 | 1244-1260 | GeneOrGeneProduct | denotes | heme oxygenase-1 |
| T17 | 1277-1287 | GeneOrGeneProduct | denotes | peroxidase |
| T18 | 1315-1318 | GeneOrGeneProduct | denotes | TGF |
| T19 | 1326-1339 | GeneOrGeneProduct | denotes | interleukin-6 |
| T20 | 1400-1403 | GeneOrGeneProduct | denotes | TGF |
| T21 | 1414-1419 | GeneOrGeneProduct | denotes | Bach1 |
| T22 | 1746-1751 | GeneOrGeneProduct | denotes | Bach1 |
| T23 | 1840-1845 | GeneOrGeneProduct | denotes | Bach1 |
LitCoin_Mondo_095
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 41-59 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | 0002771 |
| T2 | 314-332 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | 0002771 |
| T3 | 334-336 | DiseaseOrPhenotypicFeature | denotes | PF | 0019324|0002771 |
| T5 | 537-540 | DiseaseOrPhenotypicFeature | denotes | BLM | 0008876 |
| T6 | 550-552 | DiseaseOrPhenotypicFeature | denotes | PF | 0019324|0002771 |
| T8 | 560-564 | DiseaseOrPhenotypicFeature | denotes | lung | 0021117 |
| T9 | 921-924 | DiseaseOrPhenotypicFeature | denotes | BLM | 0008876 |
| T10 | 933-935 | DiseaseOrPhenotypicFeature | denotes | PF | 0019324|0002771 |
| T12 | 1568-1571 | DiseaseOrPhenotypicFeature | denotes | BLM | 0008876 |
| T13 | 1676-1680 | DiseaseOrPhenotypicFeature | denotes | lung | 0021117 |
| T14 | 1785-1788 | DiseaseOrPhenotypicFeature | denotes | BLM | 0008876 |
| T15 | 1886-1889 | DiseaseOrPhenotypicFeature | denotes | BLM | 0008876 |
| T16 | 1898-1900 | DiseaseOrPhenotypicFeature | denotes | PF | 0019324|0002771 |
| T18 | 2006-2008 | DiseaseOrPhenotypicFeature | denotes | PF | 0019324|0002771 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 41-59 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | D011658 |
| T2 | 144-156 | DiseaseOrPhenotypicFeature | denotes | inflammation | DISEASE|D007249 |
| T4 | 161-169 | DiseaseOrPhenotypicFeature | denotes | fibrosis | D005355 |
| T5 | 314-332 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | D011658 |
| T6 | 334-336 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
| T7 | 550-552 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
| T8 | 933-935 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
| T9 | 1515-1523 | DiseaseOrPhenotypicFeature | denotes | fibrosis | D005355 |
| T10 | 1592-1604 | DiseaseOrPhenotypicFeature | denotes | inflammatory | DISEASE |
| T11 | 1898-1900 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
| T12 | 2006-2008 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T1 | 41-59 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | D011658 |
| T2 | 144-156 | DiseaseOrPhenotypicFeature | denotes | inflammation | D007249 |
| T3 | 161-169 | DiseaseOrPhenotypicFeature | denotes | fibrosis | D005355 |
| T4 | 314-332 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | D011658 |
| T5 | 334-336 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
| T6 | 550-552 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
| T7 | 933-935 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
| T8 | 1515-1523 | DiseaseOrPhenotypicFeature | denotes | fibrosis | D005355 |
| T9 | 1898-1900 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
| T10 | 2006-2008 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 |
LitCoin-Chemical-MeSH-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 23-32 | ChemicalEntity | denotes | bleomycin | http://purl.obolibrary.org/obo/CHEBI_22907 |
| T2 | 526-535 | ChemicalEntity | denotes | bleomycin | http://purl.obolibrary.org/obo/CHEBI_22907 |
| T3 | 537-540 | ChemicalEntity | denotes | BLM | http://purl.obolibrary.org/obo/CHEBI_22907 |
| T4 | 921-924 | ChemicalEntity | denotes | BLM | http://purl.obolibrary.org/obo/CHEBI_22907 |
| T5 | 1244-1260 | ChemicalEntity | denotes | heme oxygenase-1 | D051547 |
| T6 | 1265-1289 | ChemicalEntity | denotes | glutathione peroxidase 1 | C117216 |
| T7 | 1471-1482 | ChemicalEntity | denotes | antioxidant | ChemicalEntity |
| T8 | 1568-1571 | ChemicalEntity | denotes | BLM | http://purl.obolibrary.org/obo/CHEBI_22907 |
| T9 | 1785-1788 | ChemicalEntity | denotes | BLM | http://purl.obolibrary.org/obo/CHEBI_22907 |
| T10 | 1886-1889 | ChemicalEntity | denotes | BLM | http://purl.obolibrary.org/obo/CHEBI_22907 |
LitCoin-NCBITaxon-2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 94-98 | OrganismTaxon | denotes | mice |
| T2 | 382-392 | OrganismTaxon | denotes | adenovirus |
| T3 | 516-520 | OrganismTaxon | denotes | mice |
| T4 | 554-559 | OrganismTaxon | denotes | Mouse |
| T5 | 692-702 | OrganismTaxon | denotes | adenovirus |
| T6 | 754-764 | OrganismTaxon | denotes | adenovirus |
| T7 | 906-911 | OrganismTaxon | denotes | mouse |
| T8 | 1005-1009 | OrganismTaxon | denotes | mice |
| T9 | 1545-1549 | OrganismTaxon | denotes | mice |
| T10 | 1904-1908 | OrganismTaxon | denotes | mice |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label | ID: |
|---|---|---|---|---|---|---|
| T10 | 1886-1889 | ChemicalEntity | denotes | BLM | http://purl.obolibrary.org/obo/CHEBI_22907 | |
| T9 | 1785-1788 | ChemicalEntity | denotes | BLM | http://purl.obolibrary.org/obo/CHEBI_22907 | |
| T8 | 1568-1571 | ChemicalEntity | denotes | BLM | http://purl.obolibrary.org/obo/CHEBI_22907 | |
| T7 | 1471-1482 | ChemicalEntity | denotes | antioxidant | ChemicalEntity | |
| T6 | 1265-1289 | ChemicalEntity | denotes | glutathione peroxidase 1 | C117216 | |
| T5 | 1244-1260 | ChemicalEntity | denotes | heme oxygenase-1 | D051547 | |
| T4 | 921-924 | ChemicalEntity | denotes | BLM | http://purl.obolibrary.org/obo/CHEBI_22907 | |
| T3 | 537-540 | ChemicalEntity | denotes | BLM | http://purl.obolibrary.org/obo/CHEBI_22907 | |
| T2 | 526-535 | ChemicalEntity | denotes | bleomycin | http://purl.obolibrary.org/obo/CHEBI_22907 | |
| T1 | 23-32 | ChemicalEntity | denotes | bleomycin | http://purl.obolibrary.org/obo/CHEBI_22907 | |
| T23 | 1840-1845 | GeneOrGeneProduct | denotes | Bach1 | ||
| T22 | 1746-1751 | GeneOrGeneProduct | denotes | Bach1 | ||
| T21 | 1414-1419 | GeneOrGeneProduct | denotes | Bach1 | ||
| T20 | 1400-1403 | GeneOrGeneProduct | denotes | TGF | ||
| T19 | 1326-1339 | GeneOrGeneProduct | denotes | interleukin-6 | ||
| T18 | 1315-1318 | GeneOrGeneProduct | denotes | TGF | ||
| T17 | 1277-1287 | GeneOrGeneProduct | denotes | peroxidase | ||
| T16 | 1244-1260 | GeneOrGeneProduct | denotes | heme oxygenase-1 | ||
| T15 | 1215-1233 | GeneOrGeneProduct | denotes | protein expression | ||
| T14 | 1174-1179 | GeneOrGeneProduct | denotes | Bach1 | ||
| T13 | 1125-1130 | GeneOrGeneProduct | denotes | Bach1 | ||
| T12 | 1059-1064 | GeneOrGeneProduct | denotes | Bach1 | ||
| T11 | 957-962 | GeneOrGeneProduct | denotes | Bach1 | ||
| T89023 | 819-824 | GeneOrGeneProduct | denotes | Bach1 | ||
| T72149 | 725-730 | GeneOrGeneProduct | denotes | Bach1 | ||
| T78898 | 708-713 | GeneOrGeneProduct | denotes | Bach1 | ||
| T14974 | 632-635 | GeneOrGeneProduct | denotes | TGF | ||
| T9270 | 617-630 | GeneOrGeneProduct | denotes | growth factor | ||
| T29798 | 464-469 | GeneOrGeneProduct | denotes | Bach1 | ||
| T16161 | 370-375 | GeneOrGeneProduct | denotes | Bach1 | ||
| T98733 | 193-218 | GeneOrGeneProduct | denotes | transcriptional repressor | ||
| T99365 | 171-176 | GeneOrGeneProduct | denotes | Bach1 | ||
| T87078 | 0-5 | GeneOrGeneProduct | denotes | Bach1 | ||
| T41643 | 2006-2008 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 | |
| T14208 | 1898-1900 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 | |
| T8526 | 1515-1523 | DiseaseOrPhenotypicFeature | denotes | fibrosis | D005355 | |
| T36629 | 933-935 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 | |
| T15095 | 550-552 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 | |
| T3664 | 334-336 | DiseaseOrPhenotypicFeature | denotes | PF | D011658 | |
| T37729 | 314-332 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | D011658 | |
| T72281 | 161-169 | DiseaseOrPhenotypicFeature | denotes | fibrosis | D005355 | |
| T96728 | 144-156 | DiseaseOrPhenotypicFeature | denotes | inflammation | D007249 | |
| T18710 | 41-59 | DiseaseOrPhenotypicFeature | denotes | pulmonary fibrosis | D011658 | |
| T68956 | 1904-1908 | OrganismTaxon | denotes | mice | ||
| T43400 | 1545-1549 | OrganismTaxon | denotes | mice | ||
| T11316 | 1005-1009 | OrganismTaxon | denotes | mice | ||
| T29746 | 906-911 | OrganismTaxon | denotes | mouse | ||
| T66011 | 754-764 | OrganismTaxon | denotes | adenovirus | ||
| T24357 | 692-702 | OrganismTaxon | denotes | adenovirus | ||
| T30581 | 554-559 | OrganismTaxon | denotes | Mouse | ||
| T7449 | 516-520 | OrganismTaxon | denotes | mice | ||
| T63918 | 382-392 | OrganismTaxon | denotes | adenovirus | ||
| T96832 | 94-98 | OrganismTaxon | denotes | mice |
Inflammaging
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-99 | Sentence | denotes | Bach1 siRNA attenuates bleomycin-induced pulmonary fibrosis by modulating oxidative stress in mice. |
| T2 | 100-170 | Sentence | denotes | Oxidative stress plays an essential role in inflammation and fibrosis. |
| T3 | 171-338 | Sentence | denotes | Bach1 is an important transcriptional repressor that acts by modulating oxidative stress and represents a potential target in the treatment of pulmonary fibrosis (PF). |
| T4 | 339-553 | Sentence | denotes | In this study, we knocked down Bach1 using adenovirus-mediated small interfering RNA (siRNA) to determine whether the use of Bach1 siRNA is an effective therapeutic strategy in mice with bleomycin (BLM)‑induced PF. |
| T5 | 554-805 | Sentence | denotes | Mouse lung fibroblasts (MLFs) were incubated with transforming growth factor (TGF)-β1 (5 ng/ml) and subsequently infected with recombined adenovirus-like Bach1 siRNA1 and Bach1 siRNA2, while an empty adenovirus vector was used as the negative control. |
| T6 | 806-903 | Sentence | denotes | The selected Bach1 siRNA with higher interference efficiency was used for the animal experiments. |
| T7 | 904-1028 | Sentence | denotes | A mouse model of BLM-induced PF was established, and Bach1 siRNA (1x109 pfu) was administered to the mice via the tail vein. |
| T8 | 1029-1137 | Sentence | denotes | The results revealed that the Bach1 mRNA and protein levels were significantly downregulated by Bach1 siRNA. |
| T9 | 1138-1413 | Sentence | denotes | Furthermore, the MLFs infected with Bach1 siRNA exhibited increased mRNA and protein expression levels of heme oxygenase-1 and glutathione peroxidase 1, but decreased levels of TGF-β1 and interleukin-6 in the cell supernatants compared with the cells exposed to TGF-β1 alone. |
| T10 | 1414-1578 | Sentence | denotes | Bach1 knockdown by siRNA also enhanced the expression of antioxidant factors, but suppressed that of fibrosis‑related cytokines in mice compared with the BLM group. |
| T11 | 1579-1795 | Sentence | denotes | Finally, the inflammatory infiltration of alveolar and interstitial cells and the destruction of lung structure were significantly attenuated in the mide administered Bach1 siRNA compared with those in the BLM group. |
| T12 | 1796-1909 | Sentence | denotes | On the whole, our findings demonstrate that Bach1 siRNA exerts protective effects against BLM-induced PF in mice. |
| T13 | 1910-2009 | Sentence | denotes | Our data may provide the basis for the development of novel targeted therapeutic strategies for PF. |
| T1 | 0-99 | Sentence | denotes | Bach1 siRNA attenuates bleomycin-induced pulmonary fibrosis by modulating oxidative stress in mice. |
| T2 | 100-170 | Sentence | denotes | Oxidative stress plays an essential role in inflammation and fibrosis. |
| T3 | 171-338 | Sentence | denotes | Bach1 is an important transcriptional repressor that acts by modulating oxidative stress and represents a potential target in the treatment of pulmonary fibrosis (PF). |
| T4 | 339-553 | Sentence | denotes | In this study, we knocked down Bach1 using adenovirus-mediated small interfering RNA (siRNA) to determine whether the use of Bach1 siRNA is an effective therapeutic strategy in mice with bleomycin (BLM)‑induced PF. |
| T5 | 554-805 | Sentence | denotes | Mouse lung fibroblasts (MLFs) were incubated with transforming growth factor (TGF)-β1 (5 ng/ml) and subsequently infected with recombined adenovirus-like Bach1 siRNA1 and Bach1 siRNA2, while an empty adenovirus vector was used as the negative control. |
| T6 | 806-903 | Sentence | denotes | The selected Bach1 siRNA with higher interference efficiency was used for the animal experiments. |
| T7 | 904-1028 | Sentence | denotes | A mouse model of BLM-induced PF was established, and Bach1 siRNA (1x109 pfu) was administered to the mice via the tail vein. |
| T8 | 1029-1137 | Sentence | denotes | The results revealed that the Bach1 mRNA and protein levels were significantly downregulated by Bach1 siRNA. |
| T9 | 1138-1413 | Sentence | denotes | Furthermore, the MLFs infected with Bach1 siRNA exhibited increased mRNA and protein expression levels of heme oxygenase-1 and glutathione peroxidase 1, but decreased levels of TGF-β1 and interleukin-6 in the cell supernatants compared with the cells exposed to TGF-β1 alone. |
| T10 | 1414-1578 | Sentence | denotes | Bach1 knockdown by siRNA also enhanced the expression of antioxidant factors, but suppressed that of fibrosis‑related cytokines in mice compared with the BLM group. |
| T11 | 1579-1795 | Sentence | denotes | Finally, the inflammatory infiltration of alveolar and interstitial cells and the destruction of lung structure were significantly attenuated in the mide administered Bach1 siRNA compared with those in the BLM group. |
| T12 | 1796-1909 | Sentence | denotes | On the whole, our findings demonstrate that Bach1 siRNA exerts protective effects against BLM-induced PF in mice. |
| T13 | 1910-2009 | Sentence | denotes | Our data may provide the basis for the development of novel targeted therapeutic strategies for PF. |