PubMed:27930654
Annnotations
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 11793 | 61-67 | GeneOrGeneProduct | denotes | RAB-28 | NCBIGene:189429 |
| 11794 | 87-93 | GeneOrGeneProduct | denotes | GTPase | NCBIGene:189429 |
| 11795 | 114-120 | GeneOrGeneProduct | denotes | BBSome | NCBIGene:260219 |
| 11796 | 313-338 | DiseaseOrPhenotypicFeature | denotes | inherited human disorders | MESH:D030342 |
| 11797 | 340-352 | DiseaseOrPhenotypicFeature | denotes | ciliopathies | MESH:D000072661 |
| 11798 | 362-382 | DiseaseOrPhenotypicFeature | denotes | retinitis pigmentosa | MESH:D012174 |
| 11799 | 387-408 | DiseaseOrPhenotypicFeature | denotes | Bardet-Biedl syndrome | MESH:D020788 |
| 11800 | 410-413 | DiseaseOrPhenotypicFeature | denotes | BBS | MESH:D020788 |
| 11801 | 652-661 | GeneOrGeneProduct | denotes | kinesin-2 | NCBIGene:177685 |
| 11802 | 670-676 | GeneOrGeneProduct | denotes | dynein | NCBIGene:172041 |
| 11803 | 705-762 | GeneOrGeneProduct | denotes | Bardet-Biedl syndrome (BBS) cargo-adaptor protein complex | NCBIGene:260219 |
| 11804 | 767-773 | GeneOrGeneProduct | denotes | BBSome | NCBIGene:260219 |
| 11805 | 841-851 | OrganismTaxon | denotes | C. elegans | NCBITaxon:6239 |
| 11806 | 1124-1131 | GeneOrGeneProduct | denotes | FAM-161 | NCBIGene:189695 |
| 11807 | 1133-1140 | GeneOrGeneProduct | denotes | FAM161A | NCBIGene:84140 |
| 11808 | 1154-1162 | GeneOrGeneProduct | denotes | CCDC-104 | NCBIGene:112942 |
| 11809 | 1164-1171 | GeneOrGeneProduct | denotes | CCDC104 | NCBIGene:112942 |
| 11810 | 1178-1183 | GeneOrGeneProduct | denotes | RPI-1 | NCBIGene:189281 |
| 11811 | 1185-1188 | GeneOrGeneProduct | denotes | RP1 | NCBIGene:6101 |
| 11812 | 1189-1194 | GeneOrGeneProduct | denotes | RP1L1 | NCBIGene:94137 |
| 11813 | 1315-1320 | OrganismTaxon | denotes | human | NCBITaxon:9606 |
| 11814 | 1321-1325 | GeneOrGeneProduct | denotes | MAP9 | NCBIGene:79884 |
| 11815 | 1327-1330 | GeneOrGeneProduct | denotes | YAP | NCBIGene:10413 |
| 11816 | 1332-1339 | GeneOrGeneProduct | denotes | CCDC149 | NCBIGene:91050 |
| 11817 | 1345-1350 | GeneOrGeneProduct | denotes | RAB28 | NCBIGene:9364 |
| 11818 | 1414-1424 | OrganismTaxon | denotes | C. elegans | NCBITaxon:6239 |
| 11819 | 1425-1431 | GeneOrGeneProduct | denotes | RAB-28 | NCBIGene:189429 |
| 11820 | 1478-1496 | DiseaseOrPhenotypicFeature | denotes | cone-rod dystrophy | MESH:D000071700 |
| 11821 | 1521-1527 | GeneOrGeneProduct | denotes | GTPase | NCBIGene:189429 |
| 11822 | 1639-1642 | ChemicalEntity | denotes | GDP | MESH:D006153 |
| 11823 | 1649-1655 | GeneOrGeneProduct | denotes | RAB-28 | NCBIGene:189429 |
| 11824 | 1707-1710 | ChemicalEntity | denotes | GTP | MESH:D006160 |
| 11825 | 1729-1735 | GeneOrGeneProduct | denotes | RAB-28 | NCBIGene:189429 |
| 11826 | 1782-1788 | GeneOrGeneProduct | denotes | BBSome | NCBIGene:260219 |
| 11827 | 1947-1953 | GeneOrGeneProduct | denotes | rab-28 | NCBIGene:189429 |
| 11828 | 1995-1998 | ChemicalEntity | denotes | GDP | MESH:D006153 |
| 11829 | 2002-2005 | ChemicalEntity | denotes | GTP | MESH:D006160 |
| 11830 | 2025-2031 | GeneOrGeneProduct | denotes | RAB-28 | NCBIGene:189429 |
| 11831 | 2188-2193 | GeneOrGeneProduct | denotes | RAB28 | NCBIGene:9364 |
| 11832 | 2197-2203 | GeneOrGeneProduct | denotes | GTPase | NCBIGene:9364 |
| 11833 | 2232-2235 | DiseaseOrPhenotypicFeature | denotes | BBS | MESH:D020788 |
| 11834 | 2244-2249 | GeneOrGeneProduct | denotes | RABL4 | NCBIGene:11020 |
| 11835 | 2250-2255 | GeneOrGeneProduct | denotes | IFT27 | NCBIGene:11020 |
| 11836 | 2289-2295 | GeneOrGeneProduct | denotes | BBSome | NCBIGene:260219 |
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-150 | Sentence | denotes | Whole-Organism Developmental Expression Profiling Identifies RAB-28 as a Novel Ciliary GTPase Associated with the BBSome and Intraflagellar Transport. |
| T2 | 151-278 | Sentence | denotes | Primary cilia are specialised sensory and developmental signalling devices extending from the surface of most eukaryotic cells. |
| T3 | 279-507 | Sentence | denotes | Defects in these organelles cause inherited human disorders (ciliopathies) such as retinitis pigmentosa and Bardet-Biedl syndrome (BBS), frequently affecting many physiological and developmental processes across multiple organs. |
| T4 | 508-774 | Sentence | denotes | Cilium formation, maintenance and function depend on intracellular transport systems such as intraflagellar transport (IFT), which is driven by kinesin-2 and IFT-dynein motors and regulated by the Bardet-Biedl syndrome (BBS) cargo-adaptor protein complex, or BBSome. |
| T5 | 775-969 | Sentence | denotes | To identify new cilium-associated genes, we employed the nematode C. elegans, where ciliogenesis occurs within a short timespan during late embryogenesis when most sensory neurons differentiate. |
| T6 | 970-1244 | Sentence | denotes | Using whole-organism RNA-Seq libraries, we discovered a signature expression profile highly enriched for transcripts of known ciliary proteins, including FAM-161 (FAM161A orthologue), CCDC-104 (CCDC104), and RPI-1 (RP1/RP1L1), which we confirm are cilium-localised in worms. |
| T7 | 1245-1393 | Sentence | denotes | From a list of 185 candidate ciliary genes, we uncover orthologues of human MAP9, YAP, CCDC149, and RAB28 as conserved cilium-associated components. |
| T8 | 1394-1621 | Sentence | denotes | Further analyses of C. elegans RAB-28, recently associated with autosomal-recessive cone-rod dystrophy, reveal that this small GTPase is exclusively expressed in ciliated neurons where it dynamically associates with IFT trains. |
| T9 | 1622-1838 | Sentence | denotes | Whereas inactive GDP-bound RAB-28 displays no IFT movement and diffuse localisation, GTP-bound (activated) RAB-28 concentrates at the periciliary membrane in a BBSome-dependent manner and undergoes bidirectional IFT. |
| T10 | 1839-2092 | Sentence | denotes | Functional analyses reveal that whilst cilium structure, sensory function and IFT are seemingly normal in a rab-28 null allele, overexpression of predicted GDP or GTP locked variants of RAB-28 perturbs cilium and sensory pore morphogenesis and function. |
| T11 | 2093-2371 | Sentence | denotes | Collectively, our findings present a new approach for identifying ciliary proteins, and unveil RAB28, a GTPase most closely related to the BBS protein RABL4/IFT27, as an IFT-associated cargo with BBSome-dependent cell autonomous and non-autonomous functions at the ciliary base. |
LitCoin-entities-OrganismTaxon-PD
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 323-328 | OrganismTaxon | denotes | human | NCBItxid:9606 |
| T2 | 832-840 | OrganismTaxon | denotes | nematode | NCBItxid:6231 |
| T3 | 1185-1188 | OrganismTaxon | denotes | RP1 | NCBItxid:2670 |
| T4 | 1315-1320 | OrganismTaxon | denotes | human | NCBItxid:9606 |
LitCoin_Mondo
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 313-322 | DiseaseOrPhenotypicFeature | denotes | inherited | 0021152 |
| T2 | 340-352 | DiseaseOrPhenotypicFeature | denotes | ciliopathies | 0005308 |
| T3 | 362-382 | DiseaseOrPhenotypicFeature | denotes | retinitis pigmentosa | 0019200 |
| T4 | 362-371 | DiseaseOrPhenotypicFeature | denotes | retinitis | 0002708 |
| T5 | 387-408 | DiseaseOrPhenotypicFeature | denotes | Bardet-Biedl syndrome | 0015229 |
| T6 | 705-726 | DiseaseOrPhenotypicFeature | denotes | Bardet-Biedl syndrome | 0015229 |
| T7 | 947-954 | DiseaseOrPhenotypicFeature | denotes | neurons | 0004466 |
| T8 | 1478-1496 | DiseaseOrPhenotypicFeature | denotes | cone-rod dystrophy | 0015993 |
| T9 | 1565-1572 | DiseaseOrPhenotypicFeature | denotes | neurons | 0004466 |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 61-67 | GeneOrGeneProduct | denotes | RAB-28 |
| T2 | 73-78 | GeneOrGeneProduct | denotes | Novel |
| T3 | 87-93 | GeneOrGeneProduct | denotes | GTPase |
| T4 | 125-149 | GeneOrGeneProduct | denotes | Intraflagellar Transport |
| T5 | 226-235 | GeneOrGeneProduct | denotes | extending |
| T6 | 245-252 | GeneOrGeneProduct | denotes | surface |
| T7 | 261-271 | GeneOrGeneProduct | denotes | eukaryotic |
| T8 | 272-277 | GeneOrGeneProduct | denotes | cells |
| T9 | 279-286 | GeneOrGeneProduct | denotes | Defects |
| T10 | 362-371 | GeneOrGeneProduct | denotes | retinitis |
| T11 | 400-408 | GeneOrGeneProduct | denotes | syndrome |
| T12 | 437-441 | GeneOrGeneProduct | denotes | many |
| T13 | 474-483 | GeneOrGeneProduct | denotes | processes |
| T14 | 491-499 | GeneOrGeneProduct | denotes | multiple |
| T15 | 515-524 | GeneOrGeneProduct | denotes | formation |
| T16 | 561-584 | GeneOrGeneProduct | denotes | intracellular transport |
| T17 | 601-625 | GeneOrGeneProduct | denotes | intraflagellar transport |
| T18 | 627-630 | GeneOrGeneProduct | denotes | IFT |
| T19 | 652-661 | GeneOrGeneProduct | denotes | kinesin-2 |
| T20 | 666-669 | GeneOrGeneProduct | denotes | IFT |
| T21 | 670-676 | GeneOrGeneProduct | denotes | dynein |
| T22 | 677-683 | GeneOrGeneProduct | denotes | motors |
| T23 | 688-697 | GeneOrGeneProduct | denotes | regulated |
| T24 | 718-726 | GeneOrGeneProduct | denotes | syndrome |
| T25 | 739-754 | GeneOrGeneProduct | denotes | adaptor protein |
| T26 | 910-914 | GeneOrGeneProduct | denotes | late |
| T27 | 1055-1061 | GeneOrGeneProduct | denotes | highly |
| T28 | 1075-1086 | GeneOrGeneProduct | denotes | transcripts |
| T29 | 1096-1112 | GeneOrGeneProduct | denotes | ciliary proteins |
| T30 | 1133-1140 | GeneOrGeneProduct | denotes | FAM161A |
| T31 | 1154-1162 | GeneOrGeneProduct | denotes | CCDC-104 |
| T32 | 1164-1171 | GeneOrGeneProduct | denotes | CCDC104 |
| T33 | 1178-1183 | GeneOrGeneProduct | denotes | RPI-1 |
| T34 | 1189-1194 | GeneOrGeneProduct | denotes | RP1L1 |
| T35 | 1252-1256 | GeneOrGeneProduct | denotes | list |
| T36 | 1292-1299 | GeneOrGeneProduct | denotes | uncover |
| T37 | 1321-1325 | GeneOrGeneProduct | denotes | MAP9 |
| T38 | 1332-1339 | GeneOrGeneProduct | denotes | CCDC149 |
| T39 | 1345-1350 | GeneOrGeneProduct | denotes | RAB28 |
| T40 | 1354-1363 | GeneOrGeneProduct | denotes | conserved |
| T41 | 1425-1431 | GeneOrGeneProduct | denotes | RAB-28 |
| T42 | 1478-1482 | GeneOrGeneProduct | denotes | cone |
| T43 | 1515-1527 | GeneOrGeneProduct | denotes | small GTPase |
| T44 | 1610-1613 | GeneOrGeneProduct | denotes | IFT |
| T45 | 1630-1638 | GeneOrGeneProduct | denotes | inactive |
| T46 | 1649-1655 | GeneOrGeneProduct | denotes | RAB-28 |
| T47 | 1668-1671 | GeneOrGeneProduct | denotes | IFT |
| T48 | 1718-1727 | GeneOrGeneProduct | denotes | activated |
| T49 | 1729-1735 | GeneOrGeneProduct | denotes | RAB-28 |
| T50 | 1777-1781 | GeneOrGeneProduct | denotes | in a |
| T51 | 1834-1837 | GeneOrGeneProduct | denotes | IFT |
| T52 | 1917-1920 | GeneOrGeneProduct | denotes | IFT |
| T53 | 1947-1953 | GeneOrGeneProduct | denotes | rab-28 |
| T54 | 1954-1958 | GeneOrGeneProduct | denotes | null |
| T55 | 1985-1994 | GeneOrGeneProduct | denotes | predicted |
| T56 | 2025-2031 | GeneOrGeneProduct | denotes | RAB-28 |
| T57 | 2060-2064 | GeneOrGeneProduct | denotes | pore |
| T58 | 2111-2119 | GeneOrGeneProduct | denotes | findings |
| T59 | 2159-2175 | GeneOrGeneProduct | denotes | ciliary proteins |
| T60 | 2188-2193 | GeneOrGeneProduct | denotes | RAB28 |
| T61 | 2197-2203 | GeneOrGeneProduct | denotes | GTPase |
| T62 | 2236-2243 | GeneOrGeneProduct | denotes | protein |
| T63 | 2244-2249 | GeneOrGeneProduct | denotes | RABL4 |
| T64 | 2250-2255 | GeneOrGeneProduct | denotes | IFT27 |
| T65 | 2263-2266 | GeneOrGeneProduct | denotes | IFT |
| T66 | 2306-2310 | GeneOrGeneProduct | denotes | cell |
| T67 | 2366-2370 | GeneOrGeneProduct | denotes | base |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 61-67 | GeneOrGeneProduct | denotes | RAB-28 |
| T2 | 73-78 | GeneOrGeneProduct | denotes | Novel |
| T3 | 87-93 | GeneOrGeneProduct | denotes | GTPase |
| T4 | 125-149 | GeneOrGeneProduct | denotes | Intraflagellar Transport |
| T5 | 245-252 | GeneOrGeneProduct | denotes | surface |
| T6 | 261-271 | GeneOrGeneProduct | denotes | eukaryotic |
| T7 | 400-408 | GeneOrGeneProduct | denotes | syndrome |
| T8 | 491-499 | GeneOrGeneProduct | denotes | multiple |
| T9 | 561-584 | GeneOrGeneProduct | denotes | intracellular transport |
| T10 | 601-625 | GeneOrGeneProduct | denotes | intraflagellar transport |
| T11 | 627-630 | GeneOrGeneProduct | denotes | IFT |
| T12 | 652-661 | GeneOrGeneProduct | denotes | kinesin-2 |
| T13 | 666-669 | GeneOrGeneProduct | denotes | IFT |
| T14 | 670-676 | GeneOrGeneProduct | denotes | dynein |
| T15 | 718-726 | GeneOrGeneProduct | denotes | syndrome |
| T16 | 739-754 | GeneOrGeneProduct | denotes | adaptor protein |
| T17 | 1096-1112 | GeneOrGeneProduct | denotes | ciliary proteins |
| T18 | 1133-1140 | GeneOrGeneProduct | denotes | FAM161A |
| T19 | 1154-1162 | GeneOrGeneProduct | denotes | CCDC-104 |
| T20 | 1164-1171 | GeneOrGeneProduct | denotes | CCDC104 |
| T21 | 1178-1183 | GeneOrGeneProduct | denotes | RPI-1 |
| T22 | 1189-1194 | GeneOrGeneProduct | denotes | RP1L1 |
| T23 | 1321-1325 | GeneOrGeneProduct | denotes | MAP9 |
| T24 | 1332-1339 | GeneOrGeneProduct | denotes | CCDC149 |
| T25 | 1345-1350 | GeneOrGeneProduct | denotes | RAB28 |
| T26 | 1354-1363 | GeneOrGeneProduct | denotes | conserved |
| T27 | 1425-1431 | GeneOrGeneProduct | denotes | RAB-28 |
| T28 | 1515-1527 | GeneOrGeneProduct | denotes | small GTPase |
| T29 | 1610-1613 | GeneOrGeneProduct | denotes | IFT |
| T30 | 1630-1638 | GeneOrGeneProduct | denotes | inactive |
| T31 | 1649-1655 | GeneOrGeneProduct | denotes | RAB-28 |
| T32 | 1668-1671 | GeneOrGeneProduct | denotes | IFT |
| T33 | 1729-1735 | GeneOrGeneProduct | denotes | RAB-28 |
| T34 | 1834-1837 | GeneOrGeneProduct | denotes | IFT |
| T35 | 1917-1920 | GeneOrGeneProduct | denotes | IFT |
| T36 | 1947-1953 | GeneOrGeneProduct | denotes | rab-28 |
| T37 | 1954-1958 | GeneOrGeneProduct | denotes | null |
| T38 | 2025-2031 | GeneOrGeneProduct | denotes | RAB-28 |
| T39 | 2159-2175 | GeneOrGeneProduct | denotes | ciliary proteins |
| T40 | 2188-2193 | GeneOrGeneProduct | denotes | RAB28 |
| T41 | 2197-2203 | GeneOrGeneProduct | denotes | GTPase |
| T42 | 2236-2243 | GeneOrGeneProduct | denotes | protein |
| T43 | 2244-2249 | GeneOrGeneProduct | denotes | RABL4 |
| T44 | 2250-2255 | GeneOrGeneProduct | denotes | IFT27 |
| T45 | 2263-2266 | GeneOrGeneProduct | denotes | IFT |
| T46 | 2306-2310 | GeneOrGeneProduct | denotes | cell |
LitCoin-NCBITaxon-2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 323-328 | OrganismTaxon | denotes | human |
| T2 | 832-840 | OrganismTaxon | denotes | nematode |
| T3 | 841-851 | OrganismTaxon | denotes | C. elegans |
| T4 | 1185-1188 | OrganismTaxon | denotes | RP1 |
| T5 | 1315-1320 | OrganismTaxon | denotes | human |
| T6 | 1414-1424 | OrganismTaxon | denotes | C. elegans |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T1 | 340-352 | DiseaseOrPhenotypicFeature | denotes | ciliopathies | D000072661 |
| T2 | 362-382 | DiseaseOrPhenotypicFeature | denotes | retinitis pigmentosa | D012174 |
| T3 | 387-408 | DiseaseOrPhenotypicFeature | denotes | Bardet-Biedl syndrome | D020788 |
| T4 | 410-413 | DiseaseOrPhenotypicFeature | denotes | BBS | D020788 |
| T5 | 705-726 | DiseaseOrPhenotypicFeature | denotes | Bardet-Biedl syndrome | D020788 |
| T6 | 728-731 | DiseaseOrPhenotypicFeature | denotes | BBS | D020788 |
| T7 | 1478-1496 | DiseaseOrPhenotypicFeature | denotes | cone-rod dystrophy | D000071700 |
| T8 | 2232-2235 | DiseaseOrPhenotypicFeature | denotes | BBS | D020788 |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 61-67 | GeneOrGeneProduct | denotes | RAB-28 |
| T2 | 125-149 | GeneOrGeneProduct | denotes | Intraflagellar Transport |
| T3 | 261-271 | GeneOrGeneProduct | denotes | eukaryotic |
| T4 | 561-584 | GeneOrGeneProduct | denotes | intracellular transport |
| T5 | 601-625 | GeneOrGeneProduct | denotes | intraflagellar transport |
| T6 | 627-630 | GeneOrGeneProduct | denotes | IFT |
| T7 | 652-661 | GeneOrGeneProduct | denotes | kinesin-2 |
| T8 | 666-669 | GeneOrGeneProduct | denotes | IFT |
| T9 | 670-676 | GeneOrGeneProduct | denotes | dynein |
| T10 | 739-754 | GeneOrGeneProduct | denotes | adaptor protein |
| T11 | 1133-1140 | GeneOrGeneProduct | denotes | FAM161A |
| T12 | 1154-1162 | GeneOrGeneProduct | denotes | CCDC-104 |
| T13 | 1164-1171 | GeneOrGeneProduct | denotes | CCDC104 |
| T14 | 1178-1183 | GeneOrGeneProduct | denotes | RPI-1 |
| T15 | 1189-1194 | GeneOrGeneProduct | denotes | RP1L1 |
| T16 | 1321-1325 | GeneOrGeneProduct | denotes | MAP9 |
| T17 | 1332-1339 | GeneOrGeneProduct | denotes | CCDC149 |
| T18 | 1345-1350 | GeneOrGeneProduct | denotes | RAB28 |
| T19 | 1425-1431 | GeneOrGeneProduct | denotes | RAB-28 |
| T20 | 1515-1527 | GeneOrGeneProduct | denotes | small GTPase |
| T21 | 1610-1613 | GeneOrGeneProduct | denotes | IFT |
| T22 | 1649-1655 | GeneOrGeneProduct | denotes | RAB-28 |
| T23 | 1668-1671 | GeneOrGeneProduct | denotes | IFT |
| T24 | 1729-1735 | GeneOrGeneProduct | denotes | RAB-28 |
| T25 | 1834-1837 | GeneOrGeneProduct | denotes | IFT |
| T26 | 1917-1920 | GeneOrGeneProduct | denotes | IFT |
| T27 | 1947-1953 | GeneOrGeneProduct | denotes | rab-28 |
| T28 | 2025-2031 | GeneOrGeneProduct | denotes | RAB-28 |
| T29 | 2188-2193 | GeneOrGeneProduct | denotes | RAB28 |
| T30 | 2244-2249 | GeneOrGeneProduct | denotes | RABL4 |
| T31 | 2250-2255 | GeneOrGeneProduct | denotes | IFT27 |
| T32 | 2263-2266 | GeneOrGeneProduct | denotes | IFT |
LitCoin_Mondo_095
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 340-352 | DiseaseOrPhenotypicFeature | denotes | ciliopathies | 0005308 |
| T2 | 362-382 | DiseaseOrPhenotypicFeature | denotes | retinitis pigmentosa | 0019200|0008377 |
| T4 | 387-408 | DiseaseOrPhenotypicFeature | denotes | Bardet-Biedl syndrome | 0015229|0014432 |
| T6 | 410-413 | DiseaseOrPhenotypicFeature | denotes | BBS | 0015229|0014432 |
| T8 | 705-726 | DiseaseOrPhenotypicFeature | denotes | Bardet-Biedl syndrome | 0015229|0014432 |
| T10 | 728-731 | DiseaseOrPhenotypicFeature | denotes | BBS | 0015229|0014432 |
| T12 | 1185-1188 | DiseaseOrPhenotypicFeature | denotes | RP1 | 0008377 |
| T13 | 1478-1496 | DiseaseOrPhenotypicFeature | denotes | cone-rod dystrophy | 0015993|0007362 |
| T15 | 2232-2235 | DiseaseOrPhenotypicFeature | denotes | BBS | 0015229|0014432 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 313-338 | DiseaseOrPhenotypicFeature | denotes | inherited human disorders | DISEASE |
| T2 | 340-352 | DiseaseOrPhenotypicFeature | denotes | ciliopathies | D000072661 |
| T3 | 362-382 | DiseaseOrPhenotypicFeature | denotes | retinitis pigmentosa | D012174 |
| T4 | 387-408 | DiseaseOrPhenotypicFeature | denotes | Bardet-Biedl syndrome | D020788 |
| T5 | 410-413 | DiseaseOrPhenotypicFeature | denotes | BBS | D020788 |
| T6 | 705-726 | DiseaseOrPhenotypicFeature | denotes | Bardet-Biedl syndrome | D020788 |
| T7 | 728-731 | DiseaseOrPhenotypicFeature | denotes | BBS | D020788 |
| T8 | 1478-1496 | DiseaseOrPhenotypicFeature | denotes | cone-rod dystrophy | D000071700 |
| T9 | 2232-2235 | DiseaseOrPhenotypicFeature | denotes | BBS | D020788 |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T1 | 313-338 | DiseaseOrPhenotypicFeature | denotes | inherited human disorders | DISEASE |
| T2 | 340-352 | DiseaseOrPhenotypicFeature | denotes | ciliopathies | D000072661 |
| T3 | 362-382 | DiseaseOrPhenotypicFeature | denotes | retinitis pigmentosa | D012174 |
| T4 | 387-408 | DiseaseOrPhenotypicFeature | denotes | Bardet-Biedl syndrome | D020788 |
| T5 | 410-413 | DiseaseOrPhenotypicFeature | denotes | BBS | D020788 |
| T6 | 705-726 | DiseaseOrPhenotypicFeature | denotes | Bardet-Biedl syndrome | D020788 |
| T7 | 728-731 | DiseaseOrPhenotypicFeature | denotes | BBS | D020788 |
| T8 | 1478-1496 | DiseaseOrPhenotypicFeature | denotes | cone-rod dystrophy | D000071700 |
| T9 | 2232-2235 | DiseaseOrPhenotypicFeature | denotes | BBS | D020788 |
LitCoin-Chemical-MeSH-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 87-93 | ChemicalEntity | denotes | GTPase | D020558 |
| T2 | 1521-1527 | ChemicalEntity | denotes | GTPase | D020558 |
| T3 | 1639-1642 | ChemicalEntity | denotes | GDP | http://purl.obolibrary.org/obo/CHEBI_58189|http://purl.obolibrary.org/obo/CHEBI_17552 |
| T5 | 1707-1710 | ChemicalEntity | denotes | GTP | http://purl.obolibrary.org/obo/CHEBI_37565|http://purl.obolibrary.org/obo/CHEBI_15996 |
| T7 | 1995-1998 | ChemicalEntity | denotes | GDP | http://purl.obolibrary.org/obo/CHEBI_58189|http://purl.obolibrary.org/obo/CHEBI_17552 |
| T9 | 2002-2005 | ChemicalEntity | denotes | GTP | http://purl.obolibrary.org/obo/CHEBI_37565|http://purl.obolibrary.org/obo/CHEBI_15996 |
| T11 | 2197-2203 | ChemicalEntity | denotes | GTPase | D020558 |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label | ID: |
|---|---|---|---|---|---|---|
| T11 | 2197-2203 | ChemicalEntity | denotes | GTPase | D020558 | |
| T9 | 2002-2005 | ChemicalEntity | denotes | GTP | http://purl.obolibrary.org/obo/CHEBI_15996|http://purl.obolibrary.org/obo/CHEBI_37565 | |
| T7 | 1995-1998 | ChemicalEntity | denotes | GDP | http://purl.obolibrary.org/obo/CHEBI_17552|http://purl.obolibrary.org/obo/CHEBI_58189 | |
| T5 | 1707-1710 | ChemicalEntity | denotes | GTP | http://purl.obolibrary.org/obo/CHEBI_37565|http://purl.obolibrary.org/obo/CHEBI_15996 | |
| T3 | 1639-1642 | ChemicalEntity | denotes | GDP | http://purl.obolibrary.org/obo/CHEBI_17552|http://purl.obolibrary.org/obo/CHEBI_58189 | |
| T2 | 1521-1527 | ChemicalEntity | denotes | GTPase | D020558 | |
| T1 | 87-93 | ChemicalEntity | denotes | GTPase | D020558 | |
| T32 | 2263-2266 | GeneOrGeneProduct | denotes | IFT | ||
| T31 | 2250-2255 | GeneOrGeneProduct | denotes | IFT27 | ||
| T30 | 2244-2249 | GeneOrGeneProduct | denotes | RABL4 | ||
| T29 | 2188-2193 | GeneOrGeneProduct | denotes | RAB28 | ||
| T28 | 2025-2031 | GeneOrGeneProduct | denotes | RAB-28 | ||
| T27 | 1947-1953 | GeneOrGeneProduct | denotes | rab-28 | ||
| T26 | 1917-1920 | GeneOrGeneProduct | denotes | IFT | ||
| T25 | 1834-1837 | GeneOrGeneProduct | denotes | IFT | ||
| T24 | 1729-1735 | GeneOrGeneProduct | denotes | RAB-28 | ||
| T23 | 1668-1671 | GeneOrGeneProduct | denotes | IFT | ||
| T22 | 1649-1655 | GeneOrGeneProduct | denotes | RAB-28 | ||
| T21 | 1610-1613 | GeneOrGeneProduct | denotes | IFT | ||
| T20 | 1515-1527 | GeneOrGeneProduct | denotes | small GTPase | ||
| T19 | 1425-1431 | GeneOrGeneProduct | denotes | RAB-28 | ||
| T18 | 1345-1350 | GeneOrGeneProduct | denotes | RAB28 | ||
| T17 | 1332-1339 | GeneOrGeneProduct | denotes | CCDC149 | ||
| T16 | 1321-1325 | GeneOrGeneProduct | denotes | MAP9 | ||
| T15 | 1189-1194 | GeneOrGeneProduct | denotes | RP1L1 | ||
| T14 | 1178-1183 | GeneOrGeneProduct | denotes | RPI-1 | ||
| T13 | 1164-1171 | GeneOrGeneProduct | denotes | CCDC104 | ||
| T12 | 1154-1162 | GeneOrGeneProduct | denotes | CCDC-104 | ||
| T91349 | 1133-1140 | GeneOrGeneProduct | denotes | FAM161A | ||
| T10 | 739-754 | GeneOrGeneProduct | denotes | adaptor protein | ||
| T55858 | 670-676 | GeneOrGeneProduct | denotes | dynein | ||
| T8 | 666-669 | GeneOrGeneProduct | denotes | IFT | ||
| T45627 | 652-661 | GeneOrGeneProduct | denotes | kinesin-2 | ||
| T6 | 627-630 | GeneOrGeneProduct | denotes | IFT | ||
| T8278 | 601-625 | GeneOrGeneProduct | denotes | intraflagellar transport | ||
| T4 | 561-584 | GeneOrGeneProduct | denotes | intracellular transport | ||
| T69450 | 261-271 | GeneOrGeneProduct | denotes | eukaryotic | ||
| T14338 | 125-149 | GeneOrGeneProduct | denotes | Intraflagellar Transport | ||
| T27000 | 61-67 | GeneOrGeneProduct | denotes | RAB-28 | ||
| T527 | 2232-2235 | DiseaseOrPhenotypicFeature | denotes | BBS | D020788 | |
| T14950 | 1478-1496 | DiseaseOrPhenotypicFeature | denotes | cone-rod dystrophy | D000071700 | |
| T27929 | 728-731 | DiseaseOrPhenotypicFeature | denotes | BBS | D020788 | |
| T29415 | 705-726 | DiseaseOrPhenotypicFeature | denotes | Bardet-Biedl syndrome | D020788 | |
| T15507 | 410-413 | DiseaseOrPhenotypicFeature | denotes | BBS | D020788 | |
| T56269 | 387-408 | DiseaseOrPhenotypicFeature | denotes | Bardet-Biedl syndrome | D020788 | |
| T57409 | 362-382 | DiseaseOrPhenotypicFeature | denotes | retinitis pigmentosa | D012174 | |
| T71830 | 340-352 | DiseaseOrPhenotypicFeature | denotes | ciliopathies | D000072661 | |
| T68457 | 313-338 | DiseaseOrPhenotypicFeature | denotes | inherited human disorders | DISEASE | |
| T33593 | 1414-1424 | OrganismTaxon | denotes | C. elegans | ||
| T28023 | 1315-1320 | OrganismTaxon | denotes | human | ||
| T23564 | 1185-1188 | OrganismTaxon | denotes | RP1 | ||
| T13218 | 841-851 | OrganismTaxon | denotes | C. elegans | ||
| T18995 | 832-840 | OrganismTaxon | denotes | nematode | ||
| T45910 | 323-328 | OrganismTaxon | denotes | human |