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pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 2-20 cand:funRiceGene:177-chitin signaling denotes chitin deacetylase
M_1 2-20 cand:funRiceGene:124-peptidoglycan and chitin signaling denotes chitin deacetylase
M_2 2-20 cand:funRiceGene:83-peptidoglycan signaling denotes chitin deacetylase
M_3 2-20 cand:funRiceGene:121-chitin elicitor signaling pathway denotes chitin deacetylase
M_4 2-20 cand:PECO:0007386-Gerlachia oryzae exposure denotes chitin deacetylase
M_5 2-20 cand:PECO:0007378-Sarocladium oryzae exposure denotes chitin deacetylase
M_6 2-20 cand:PO:0025547-cauline paraclade denotes chitin deacetylase
M_7 2-20 cand:TO:0000302-smut disease denotes chitin deacetylase
M_8 2-20 cand:WTO:0000584-Khapra beetle denotes chitin deacetylase
M_9 2-20 cand:funRiceGene:465-blight disease denotes chitin deacetylase
M_10 95-112 cand:PECO:0007402-fungal elicitor exposure denotes elicitor activity
M_11 95-112 cand:PECO:0007410-cerebroside elicitor exposure denotes elicitor activity
M_12 95-112 cand:funRiceGene:178-jasmonate response denotes elicitor activity
M_13 95-112 cand:funRiceGene:202-phytoalexin production denotes elicitor activity
M_14 95-112 cand:PECO:0007211-Cochliobolus miyabeanus exposure denotes elicitor activity
M_15 95-112 cand:TO:0002668-jasmonic acid content denotes elicitor activity
M_16 95-112 cand:TO:0000075-light sensitivity denotes elicitor activity
M_17 95-112 cand:WTO:0000194-soil acidity denotes elicitor activity
M_18 95-112 cand:WTO:0000539-nickel toxicity denotes elicitor activity
M_19 95-112 cand:TO:0000170-elongation ability denotes elicitor activity
M_20 95-112 cand:TO:0000434-root activity denotes elicitor activity
M_21 30-62 cand:PECO:0007209-Phomopsis oryzae-sativae exposure denotes endophytic fungus Pestalotiopsis
M_22 30-62 cand:WTO:0000430-Rhizoctonia solani denotes endophytic fungus Pestalotiopsis
M_23 30-62 cand:PECO:0007376-Pyrenochaeta oryzae exposure denotes endophytic fungus Pestalotiopsis
M_24 30-62 cand:PECO:0007364-Rhizoctonia oryzae exposure denotes endophytic fungus Pestalotiopsis
M_25 30-62 cand:WTO:0000400-Fusarium oxysporum denotes endophytic fungus Pestalotiopsis
M_26 30-62 cand:WTO:0000390-Curvularia spicifera denotes endophytic fungus Pestalotiopsis
M_27 30-62 cand:PO:0025534-adventitious shoot axis denotes endophytic fungus Pestalotiopsis
M_28 30-62 cand:funRiceGene:301-ethylene homeostasis denotes endophytic fungus Pestalotiopsis
M_29 30-62 cand:PO:0025491-ovuliferous scale ovule denotes endophytic fungus Pestalotiopsis
M_30 30-62 cand:TO:0000047-sporophytic incompatibility denotes endophytic fungus Pestalotiopsis
M_31 30-62 cand:TO:0000049-gametophytic incompatibility denotes endophytic fungus Pestalotiopsis
M_32 2-20 GeneID:NA denotes chitin deacetylase
T36199 460-479 xzyao:30406 denotes chitin deacetylases
T62326 2-20 xzyao:24115 denotes chitin deacetylase
T95809 30-47 xzyao:32282 denotes endophytic fungus
T95870 586-603 xzyao:32282 denotes endophytic fungus
T78322 904-934 xzyao:25207 denotes suspension-cultured rice cells
T49344 95-112 xzyao:3061 denotes elicitor activity
T53266 1289-1294 WTO:0000323 denotes fungi
T19601 241-260 xzyao:41979 denotes plant immune system
T93419 387-406 xzyao:41979 denotes plant immune system
T6249 1100-1119 xzyao:41979 denotes plant immune system
T41291 1205-1224 xzyao:41979 denotes plant immune system
T80098 136-146 xzyao:9292 denotes rice cells
T66222 924-934 xzyao:9292 denotes rice cells
T98179 116-132 xzyao:23768 denotes chitin oligomers
T38768 717-733 xzyao:23768 denotes chitin oligomers
T79494 269-279 xzyao:3338 denotes cell walls
T99778 915-934 xzyao:1229 denotes cultured rice cells
T66955 30-62 xzyao:3190 denotes endophytic fungus Pestalotiopsis
T88256 460-479 hunflair:NA:Gene denotes chitin deacetylases
T67656 481-484 hunflair:NA:Gene denotes CDA
T12315 545-548 hunflair:NA:Gene denotes CDA
T31621 574-580 hunflair:NA:Gene denotes PesCDA
T59914 701-707 hunflair:NA:Gene denotes PesCDA
T77263 959-965 hunflair:NA:Gene denotes PesCDA
T99463 608-615 hunflair:NA:Species denotes E. coli
T51804 136-140 hunflair:NA:Species denotes rice
T52362 924-928 hunflair:NA:Species denotes rice
T85782 2-20 hunflair:NA:Gene denotes chitin deacetylase
T29524 608-615 pubtator:562:Species denotes E. coli
T26714 136-140 pubtator:4530:Species denotes rice
T66308 924-928 pubtator:4530:Species denotes rice
T76240 48-65 pubtator:36460:Species denotes Pestalotiopsis sp
T52456 554-571 pubtator:36460:Species denotes Pestalotiopsis sp

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 63-65 http://identifiers.org/oryzabase.gene/928 denotes sp
T2 63-65 http://identifiers.org/oryzabase.gene/468 denotes sp
T3 63-65 http://identifiers.org/oryzabase.gene/286 denotes sp
T4 63-65 http://identifiers.org/oryzabase.gene/14696 denotes sp
T5 569-571 http://identifiers.org/oryzabase.gene/928 denotes sp
T6 569-571 http://identifiers.org/oryzabase.gene/468 denotes sp
T7 569-571 http://identifiers.org/oryzabase.gene/286 denotes sp
T8 569-571 http://identifiers.org/oryzabase.gene/14696 denotes sp
T62849 63-65 http://identifiers.org/ricegap/LOC_Os11g12740 denotes sp
T68476 569-571 http://identifiers.org/ricegap/LOC_Os11g12740 denotes sp
T47361 63-65 http://identifiers.org/rapdb.locus/Os11g0235200 denotes sp
T70359 569-571 http://identifiers.org/rapdb.locus/Os11g0235200 denotes sp
T63664 63-65 http://identifiers.org/uniprot/Q53JI5 denotes sp
T50705 569-571 http://identifiers.org/uniprot/Q53JI5 denotes sp

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 775-793 xzyao:4147 denotes chitosan oligomers
M_1 1289-1294 WTO:0000323 denotes fungi
M_2 481-484 hunflair:NA:Gene denotes CDA
M_3 545-548 hunflair:NA:Gene denotes CDA
M_4 136-140 hunflair:NA:Species denotes rice
M_5 924-928 hunflair:NA:Species denotes rice
M_6 574-580 hunflair:NA:Gene denotes PesCDA
M_7 701-707 hunflair:NA:Gene denotes PesCDA
M_8 959-965 hunflair:NA:Gene denotes PesCDA
M_9 460-479 hunflair:NA:Gene denotes chitin deacetylases
M_10 608-615 hunflair:NA:Species denotes E. coli
M_11 2-20 hunflair:NA:Gene denotes chitin deacetylase
M_12 608-615 pubtator:562:Species denotes E. coli
M_13 136-140 pubtator:4530:Species denotes rice
M_14 924-928 pubtator:4530:Species denotes rice
M_15 48-65 pubtator:36460:Species denotes Pestalotiopsis sp
M_16 554-571 pubtator:36460:Species denotes Pestalotiopsis sp

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 865-866 http://identifiers.org/oryzabase.gene/11216 denotes 1

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 63-65 http://identifiers.org/oryzabase.gene/928 denotes sp
T2 569-571 http://identifiers.org/oryzabase.gene/928 denotes sp
T63294 63-65 http://identifiers.org/rapdb.locus/Os11g0235200 denotes sp
T74680 569-571 http://identifiers.org/rapdb.locus/Os11g0235200 denotes sp

NGLY1-deficiency

Id Subject Object Predicate Lexical cue
PD-NGLY1-deficiency-B_T1 831-837 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T2 838-844 chem:24139 denotes GlcNAc
PD-NGLY1-deficiency-B_T3 853-859 chem:24139 denotes GlcNAc

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 2-8 Glycan denotes chitin
T2 116-122 Glycan denotes chitin
T3 320-326 Glycan denotes chitin
T4 371-377 Glycan denotes chitin
T5 460-466 Glycan denotes chitin
T6 717-723 Glycan denotes chitin
T7 986-992 Glycan denotes chitin

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 481-484 Disease denotes CDA http://purl.obolibrary.org/obo/MONDO_0019403
T2 545-548 Disease denotes CDA http://purl.obolibrary.org/obo/MONDO_0019403

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 2-8 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T2 116-122 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T3 320-326 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T4 371-377 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T5 460-466 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T6 717-723 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY
T7 986-992 Glycan denotes chitin https://api.glycosmos.org/wurcs2image/latest/png/binary/G97099AY

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 48-62 OrganismTaxon denotes Pestalotiopsis 37840
T2 136-140 OrganismTaxon denotes rice 4530
T3 554-568 OrganismTaxon denotes Pestalotiopsis 37840
T4 608-615 OrganismTaxon denotes E. coli 562
T5 924-928 OrganismTaxon denotes rice 4530
T6 1289-1294 OrganismTaxon denotes fungi 4751

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 247-260 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T2 393-406 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T3 1106-1119 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T4 1211-1224 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-147 Sentence denotes A chitin deacetylase from the endophytic fungus Pestalotiopsis sp. efficiently inactivates the elicitor activity of chitin oligomers in rice cells.
T2 148-327 Sentence denotes To successfully survive in plants, endophytes need strategies to avoid being detected by the plant immune system, as the cell walls of endophytes contain easily detectible chitin.
T3 328-486 Sentence denotes It is possible that endophytes "hide" this chitin from the plant immune system by modifying it, or oligomers derived from it, using chitin deacetylases (CDA).
T4 487-681 Sentence denotes To explore this hypothesis, we identified and expressed a CDA from Pestalotiopsis sp. (PesCDA), an endophytic fungus, in E. coli and characterized this enzyme and its chitosan oligomer products.
T5 682-830 Sentence denotes We found that when PesCDA modifies chitin oligomers, the products are partially deacetylated chitosan oligomers with a specific acetylation pattern:
T6 831-868 Sentence denotes GlcNAc-GlcNAc-(GlcN)n-GlcNAc (n ≥ 1).
T7 869-1120 Sentence denotes Then, in a bioactivity assay where suspension-cultured rice cells were incubated with the PesCDA products (processed chitin hexamers), we found that, unlike the substrate hexamers, chitosan oligomer products no longer elicited the plant immune system.
T8 1121-1333 Sentence denotes Thus, this endophytic enzyme can prevent the endophyte from being recognized by the plant immune system; this might represent a more general hypothesis for how certain fungi are able to live in or on their hosts.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-147 Sentence denotes A chitin deacetylase from the endophytic fungus Pestalotiopsis sp. efficiently inactivates the elicitor activity of chitin oligomers in rice cells.
T2 148-327 Sentence denotes To successfully survive in plants, endophytes need strategies to avoid being detected by the plant immune system, as the cell walls of endophytes contain easily detectible chitin.
T3 328-486 Sentence denotes It is possible that endophytes "hide" this chitin from the plant immune system by modifying it, or oligomers derived from it, using chitin deacetylases (CDA).
T4 487-681 Sentence denotes To explore this hypothesis, we identified and expressed a CDA from Pestalotiopsis sp. (PesCDA), an endophytic fungus, in E. coli and characterized this enzyme and its chitosan oligomer products.
T5 682-830 Sentence denotes We found that when PesCDA modifies chitin oligomers, the products are partially deacetylated chitosan oligomers with a specific acetylation pattern:
T6 831-868 Sentence denotes GlcNAc-GlcNAc-(GlcN)n-GlcNAc (n ≥ 1).
T7 869-1120 Sentence denotes Then, in a bioactivity assay where suspension-cultured rice cells were incubated with the PesCDA products (processed chitin hexamers), we found that, unlike the substrate hexamers, chitosan oligomer products no longer elicited the plant immune system.
T8 1121-1333 Sentence denotes Thus, this endophytic enzyme can prevent the endophyte from being recognized by the plant immune system; this might represent a more general hypothesis for how certain fungi are able to live in or on their hosts.

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 247-260 Body_part denotes immune system FMA:9825
T2 393-406 Body_part denotes immune system FMA:9825
T3 1106-1119 Body_part denotes immune system FMA:9825
T4 1211-1224 Body_part denotes immune system FMA:9825

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 48-62 OrganismTaxon denotes Pestalotiopsis 37840
T2 136-140 OrganismTaxon denotes rice 4530
T3 554-568 OrganismTaxon denotes Pestalotiopsis 37840
T4 608-615 OrganismTaxon denotes E. coli 562
T5 924-928 OrganismTaxon denotes rice 4530
T6 1289-1294 OrganismTaxon denotes fungi 4751

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 247-260 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T2 393-406 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T3 1106-1119 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405
T4 1211-1224 Body_part denotes immune system http://purl.obolibrary.org/obo/UBERON_0002405