PubMed:27795673
Annnotations
21k_plant_trait_mention
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 260-287 | xzyao:14832 | denotes | starch biosynthesis enzymes |
| M_1 | 652-666 | TO:0000696, xzyao:2819 | denotes | starch content |
| M_2 | 932-952 | xzyao:16488 | denotes | gene complementation |
| M_3 | 119-125 | funRiceGene:143 | denotes | starch |
| M_4 | 260-266 | funRiceGene:143 | denotes | starch |
| M_5 | 338-344 | funRiceGene:143 | denotes | starch |
| M_6 | 527-533 | funRiceGene:143 | denotes | starch |
| M_7 | 652-658 | funRiceGene:143 | denotes | starch |
| M_8 | 1217-1223 | funRiceGene:143 | denotes | starch |
| M_9 | 1405-1411 | funRiceGene:143 | denotes | starch |
| M_10 | 1217-1232 | xzyao:11334 | denotes | starch granules |
| M_11 | 534-543 | funRiceGene:525 | denotes | branching |
| M_12 | 1135-1144 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_13 | 109-118 | funRiceGene:269 | denotes | resistant |
| M_14 | 328-337 | funRiceGene:269 | denotes | resistant |
| M_15 | 642-651 | funRiceGene:269 | denotes | resistant |
| M_16 | 1395-1404 | funRiceGene:269 | denotes | resistant |
| M_17 | 260-279 | funRiceGene:102, xzyao:10310 | denotes | starch biosynthesis |
| M_18 | 847-856 | funRiceGene:504 | denotes | flowering |
| M_19 | 787-801 | xzyao:972 | denotes | immature seeds |
| M_20 | 181-194 | hunflair:NA:Disease | denotes | colon cancers |
| M_21 | 372-384 | hunflair:NA:Species | denotes | Oryza sativa |
| M_22 | 584-588 | hunflair:NA:Gene | denotes | SBE3 |
| M_23 | 196-204 | hunflair:NA:Disease | denotes | diarrhea |
| M_24 | 9-19 | hunflair:NA:Chemical | denotes | amino acid |
| M_25 | 89-93 | hunflair:NA:Species | denotes | rice |
| M_26 | 366-370 | hunflair:NA:Species | denotes | rice |
| M_27 | 459-463 | hunflair:NA:Species | denotes | rice |
| M_28 | 522-526 | hunflair:NA:Species | denotes | rice |
| M_29 | 674-678 | hunflair:NA:Species | denotes | rice |
| M_30 | 895-899 | hunflair:NA:Species | denotes | rice |
| M_31 | 32-40 | hunflair:NA:Gene | denotes | OsSBEIIb |
| M_32 | 989-997 | hunflair:NA:Gene | denotes | OsSBEIIb |
| M_33 | 1348-1356 | hunflair:NA:Gene | denotes | OsSBEIIb |
| M_34 | 171-179 | hunflair:NA:Disease | denotes | diabetes |
| M_35 | 439-446 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_36 | 591-598 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_37 | 1007-1014 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_38 | 1319-1326 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_39 | 210-244 | hunflair:NA:Disease | denotes | chronic renal and hepatic diseases |
| M_40 | 556-562 | hunflair:NA:Gene | denotes | SBEIIb |
| M_41 | 196-204 | pubtator:MESH:D003967:Disease | denotes | diarrhea |
| M_42 | 171-179 | pubtator:MESH:D003920:Disease | denotes | diabetes |
| M_43 | 181-194 | pubtator:MESH:D015179:Disease | denotes | colon cancers |
| M_44 | 89-93 | pubtator:4530:Species | denotes | rice |
| M_45 | 366-370 | pubtator:4530:Species | denotes | rice |
| M_46 | 459-463 | pubtator:4530:Species | denotes | rice |
| M_47 | 522-526 | pubtator:4530:Species | denotes | rice |
| M_48 | 674-678 | pubtator:4530:Species | denotes | rice |
| M_49 | 895-899 | pubtator:4530:Species | denotes | rice |
| M_50 | 210-244 | pubtator:MESH:D051436:Disease | denotes | chronic renal and hepatic diseases |
| M_51 | 372-386 | pubtator:4530:Species | denotes | Oryza sativa L |
pqqtest_sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 372-384 | xzyao:1553 | denotes | Oryza sativa |
| M_1 | 847-856 | funRiceGene:504 | denotes | flowering |
| M_2 | 56-65 | funRiceGene:269 | denotes | resistant |
| M_3 | 109-118 | funRiceGene:269 | denotes | resistant |
| M_4 | 328-337 | funRiceGene:269 | denotes | resistant |
| M_5 | 642-651 | funRiceGene:269 | denotes | resistant |
| M_6 | 1395-1404 | funRiceGene:269 | denotes | resistant |
| M_7 | 1217-1232 | xzyao:2609 | denotes | starch granules |
| M_8 | 444-451 | xzyao:43419 | denotes | rs gene |
| M_9 | 534-550 | xzyao:2611 | denotes | branching enzyme |
| M_10 | 312-324 | xzyao:37575 | denotes | high content |
| M_11 | 1096-1100 | PO:0009010, funRiceGene:180 | denotes | seed |
| M_12 | 787-801 | xzyao:9646 | denotes | immature seeds |
| M_13 | 260-279 | funRiceGene:102, xzyao:20491 | denotes | starch biosynthesis |
| M_14 | 652-666 | TO:0000696, xzyao:25563 | denotes | starch content |
| M_15 | 836-856 | xzyao:36072 | denotes | days after flowering |
| M_16 | 66-72 | funRiceGene:143 | denotes | starch |
| M_17 | 119-125 | funRiceGene:143 | denotes | starch |
| M_18 | 260-266 | funRiceGene:143 | denotes | starch |
| M_19 | 338-344 | funRiceGene:143 | denotes | starch |
| M_20 | 527-533 | funRiceGene:143 | denotes | starch |
| M_21 | 652-658 | funRiceGene:143 | denotes | starch |
| M_22 | 1217-1223 | funRiceGene:143 | denotes | starch |
| M_23 | 1405-1411 | funRiceGene:143 | denotes | starch |
| M_24 | 66-85 | xzyao:23223 | denotes | starch accumulation |
| M_25 | 534-543 | funRiceGene:525 | denotes | branching |
| M_26 | 527-550 | xzyao:3088 | denotes | starch branching enzyme |
| M_27 | 1135-1144 | PO:0009089, funRiceGene:253 | denotes | endosperm |
| M_28 | 9-19 | xzyao:10364 | denotes | amino acid |
| M_29 | 181-194 | hunflair:NA:Disease | denotes | colon cancers |
| M_30 | 210-244 | hunflair:NA:Disease | denotes | chronic renal and hepatic diseases |
| M_31 | 171-179 | hunflair:NA:Disease | denotes | diabetes |
| M_32 | 9-19 | hunflair:NA:Chemical | denotes | amino acid |
| M_33 | 196-204 | hunflair:NA:Disease | denotes | diarrhea |
| M_34 | 439-446 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_35 | 591-598 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_36 | 1007-1014 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_37 | 1319-1326 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_38 | 556-562 | hunflair:NA:Gene | denotes | SBEIIb |
| M_39 | 372-384 | hunflair:NA:Species | denotes | Oryza sativa |
| M_40 | 32-40 | hunflair:NA:Gene | denotes | OsSBEIIb |
| M_41 | 989-997 | hunflair:NA:Gene | denotes | OsSBEIIb |
| M_42 | 1348-1356 | hunflair:NA:Gene | denotes | OsSBEIIb |
| M_43 | 89-93 | hunflair:NA:Species | denotes | rice |
| M_44 | 366-370 | hunflair:NA:Species | denotes | rice |
| M_45 | 459-463 | hunflair:NA:Species | denotes | rice |
| M_46 | 522-526 | hunflair:NA:Species | denotes | rice |
| M_47 | 674-678 | hunflair:NA:Species | denotes | rice |
| M_48 | 895-899 | hunflair:NA:Species | denotes | rice |
| M_49 | 584-588 | hunflair:NA:Gene | denotes | SBE3 |
| M_50 | 196-204 | pubtator:MESH:D003967:Disease | denotes | diarrhea |
| M_51 | 171-179 | pubtator:MESH:D003920:Disease | denotes | diabetes |
| M_52 | 372-386 | pubtator:4530:Species | denotes | Oryza sativa L |
| M_53 | 89-93 | pubtator:4530:Species | denotes | rice |
| M_54 | 366-370 | pubtator:4530:Species | denotes | rice |
| M_55 | 459-463 | pubtator:4530:Species | denotes | rice |
| M_56 | 522-526 | pubtator:4530:Species | denotes | rice |
| M_57 | 674-678 | pubtator:4530:Species | denotes | rice |
| M_58 | 895-899 | pubtator:4530:Species | denotes | rice |
| M_59 | 181-194 | pubtator:MESH:D015179:Disease | denotes | colon cancers |
| M_60 | 210-244 | pubtator:MESH:D051436:Disease | denotes | chronic renal and hepatic diseases |
OryzaGP_2021_v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 32-40 | http://identifiers.org/oryzabase.gene/503 | denotes | OsSBEIIb |
| T2 | 439-443 | http://identifiers.org/oryzabase.gene/503 | denotes | sbe3 |
| T3 | 556-562 | http://identifiers.org/oryzabase.gene/503 | denotes | SBEIIb |
| T4 | 584-588 | http://identifiers.org/oryzabase.gene/503 | denotes | SBE3 |
| T5 | 591-595 | http://identifiers.org/oryzabase.gene/503 | denotes | sbe3 |
| T6 | 989-997 | http://identifiers.org/oryzabase.gene/503 | denotes | OsSBEIIb |
| T7 | 1007-1011 | http://identifiers.org/oryzabase.gene/503 | denotes | sbe3 |
| T8 | 1319-1323 | http://identifiers.org/oryzabase.gene/503 | denotes | sbe3 |
| T9 | 1348-1356 | http://identifiers.org/oryzabase.gene/503 | denotes | OsSBEIIb |
| T93738 | 32-40 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | OsSBEIIb |
| T39713 | 439-443 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | sbe3 |
| T83113 | 556-562 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | SBEIIb |
| T91146 | 584-588 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | SBE3 |
| T50397 | 591-595 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | sbe3 |
| T24045 | 989-997 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | OsSBEIIb |
| T61767 | 1007-1011 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | sbe3 |
| T8297 | 1319-1323 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | sbe3 |
| T95578 | 1348-1356 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | OsSBEIIb |
OryzaGP_2021_FLAIR
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 181-194 | hunflair:NA:Disease | denotes | colon cancers |
| M_1 | 372-384 | hunflair:NA:Species | denotes | Oryza sativa |
| M_2 | 9-19 | hunflair:NA:Chemical | denotes | amino acid |
| M_3 | 89-93 | hunflair:NA:Species | denotes | rice |
| M_4 | 366-370 | hunflair:NA:Species | denotes | rice |
| M_5 | 459-463 | hunflair:NA:Species | denotes | rice |
| M_6 | 522-526 | hunflair:NA:Species | denotes | rice |
| M_7 | 674-678 | hunflair:NA:Species | denotes | rice |
| M_8 | 895-899 | hunflair:NA:Species | denotes | rice |
| M_9 | 196-204 | hunflair:NA:Disease | denotes | diarrhea |
| M_10 | 171-179 | hunflair:NA:Disease | denotes | diabetes |
| M_11 | 439-446 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_12 | 591-598 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_13 | 1007-1014 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_14 | 1319-1326 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_15 | 584-588 | hunflair:NA:Gene | denotes | SBE3 |
| M_16 | 556-562 | hunflair:NA:Gene | denotes | SBEIIb |
| M_17 | 32-40 | hunflair:NA:Gene | denotes | OsSBEIIb |
| M_18 | 989-997 | hunflair:NA:Gene | denotes | OsSBEIIb |
| M_19 | 1348-1356 | hunflair:NA:Gene | denotes | OsSBEIIb |
| M_20 | 210-244 | hunflair:NA:Disease | denotes | chronic renal and hepatic diseases |
OryzaGP_2021
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 32-40 | http://identifiers.org/oryzabase.gene/503 | denotes | OsSBEIIb |
| T2 | 439-443 | http://identifiers.org/oryzabase.gene/503 | denotes | sbe3 |
| T3 | 444-446 | http://identifiers.org/oryzabase.gene/760 | denotes | rs |
| T4 | 556-562 | http://identifiers.org/oryzabase.gene/503 | denotes | SBEIIb |
| T5 | 584-588 | http://identifiers.org/oryzabase.gene/503 | denotes | SBE3 |
| T6 | 591-595 | http://identifiers.org/oryzabase.gene/503 | denotes | sbe3 |
| T7 | 596-598 | http://identifiers.org/oryzabase.gene/760 | denotes | rs |
| T8 | 989-997 | http://identifiers.org/oryzabase.gene/503 | denotes | OsSBEIIb |
| T9 | 1007-1011 | http://identifiers.org/oryzabase.gene/503 | denotes | sbe3 |
| T10 | 1012-1014 | http://identifiers.org/oryzabase.gene/760 | denotes | rs |
| T11 | 1319-1323 | http://identifiers.org/oryzabase.gene/503 | denotes | sbe3 |
| T12 | 1324-1326 | http://identifiers.org/oryzabase.gene/760 | denotes | rs |
| T13 | 1348-1356 | http://identifiers.org/oryzabase.gene/503 | denotes | OsSBEIIb |
| T35559 | 32-40 | http://identifiers.org/ricegap/LOC_Os02g32660 | denotes | OsSBEIIb |
| T16559 | 439-443 | http://identifiers.org/ricegap/LOC_Os02g32660 | denotes | sbe3 |
| T22207 | 444-446 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | rs |
| T18158 | 556-562 | http://identifiers.org/ricegap/LOC_Os02g32660 | denotes | SBEIIb |
| T73490 | 584-588 | http://identifiers.org/ricegap/LOC_Os02g32660 | denotes | SBE3 |
| T19268 | 591-595 | http://identifiers.org/ricegap/LOC_Os02g32660 | denotes | sbe3 |
| T67390 | 596-598 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | rs |
| T13014 | 989-997 | http://identifiers.org/ricegap/LOC_Os02g32660 | denotes | OsSBEIIb |
| T58603 | 1007-1011 | http://identifiers.org/ricegap/LOC_Os02g32660 | denotes | sbe3 |
| T94843 | 1012-1014 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | rs |
| T83664 | 1319-1323 | http://identifiers.org/ricegap/LOC_Os02g32660 | denotes | sbe3 |
| T95676 | 1324-1326 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | rs |
| T63686 | 1348-1356 | http://identifiers.org/ricegap/LOC_Os02g32660 | denotes | OsSBEIIb |
| T42857 | 32-40 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | OsSBEIIb |
| T7606 | 439-443 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | sbe3 |
| T4035 | 444-446 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | rs |
| T77788 | 556-562 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | SBEIIb |
| T45906 | 584-588 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | SBE3 |
| T21394 | 591-595 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | sbe3 |
| T4052 | 596-598 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | rs |
| T77546 | 989-997 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | OsSBEIIb |
| T29660 | 1007-1011 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | sbe3 |
| T50586 | 1012-1014 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | rs |
| T57560 | 1319-1323 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | sbe3 |
| T76845 | 1324-1326 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | rs |
| T59182 | 1348-1356 | http://identifiers.org/rapdb.locus/Os02g0528200 | denotes | OsSBEIIb |
| T26977 | 32-40 | http://identifiers.org/uniprot/Q6H6P8 | denotes | OsSBEIIb |
| T96352 | 439-443 | http://identifiers.org/uniprot/Q6H6P8 | denotes | sbe3 |
| T47919 | 556-562 | http://identifiers.org/uniprot/Q6H6P8 | denotes | SBEIIb |
| T88676 | 584-588 | http://identifiers.org/uniprot/Q6H6P8 | denotes | SBE3 |
| T61137 | 591-595 | http://identifiers.org/uniprot/Q6H6P8 | denotes | sbe3 |
| T6188 | 989-997 | http://identifiers.org/uniprot/Q6H6P8 | denotes | OsSBEIIb |
| T51533 | 1007-1011 | http://identifiers.org/uniprot/Q6H6P8 | denotes | sbe3 |
| T77818 | 1319-1323 | http://identifiers.org/uniprot/Q6H6P8 | denotes | sbe3 |
| T57978 | 1348-1356 | http://identifiers.org/uniprot/Q6H6P8 | denotes | OsSBEIIb |
| M_0 | 181-194 | hunflair:NA:Disease | denotes | colon cancers |
| M_1 | 372-384 | hunflair:NA:Species | denotes | Oryza sativa |
| M_2 | 9-19 | hunflair:NA:Chemical | denotes | amino acid |
| M_3 | 89-93 | hunflair:NA:Species | denotes | rice |
| M_4 | 366-370 | hunflair:NA:Species | denotes | rice |
| M_5 | 459-463 | hunflair:NA:Species | denotes | rice |
| M_6 | 522-526 | hunflair:NA:Species | denotes | rice |
| M_7 | 674-678 | hunflair:NA:Species | denotes | rice |
| M_8 | 895-899 | hunflair:NA:Species | denotes | rice |
| M_9 | 196-204 | hunflair:NA:Disease | denotes | diarrhea |
| M_10 | 171-179 | hunflair:NA:Disease | denotes | diabetes |
| M_11 | 439-446 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_12 | 591-598 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_13 | 1007-1014 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_14 | 1319-1326 | hunflair:NA:Gene | denotes | sbe3-rs |
| M_15 | 584-588 | hunflair:NA:Gene | denotes | SBE3 |
| M_16 | 556-562 | hunflair:NA:Gene | denotes | SBEIIb |
| M_17 | 32-40 | hunflair:NA:Gene | denotes | OsSBEIIb |
| M_18 | 989-997 | hunflair:NA:Gene | denotes | OsSBEIIb |
| M_19 | 1348-1356 | hunflair:NA:Gene | denotes | OsSBEIIb |
| M_20 | 210-244 | hunflair:NA:Disease | denotes | chronic renal and hepatic diseases |
OryzaGP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 32-40 | gene | denotes | OsSBEIIb |
| T2 | 527-550 | gene | denotes | starch branching enzyme |
| T3 | 989-997 | gene | denotes | OsSBEIIb |
| T4 | 1348-1357 | gene | denotes | OsSBEIIb, |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-94 | Sentence | denotes | A single amino acid mutation of OsSBEIIb contributes to resistant starch accumulation in rice. |
| T2 | 95-245 | Sentence | denotes | Foods rich in resistant starch can help prevent various diseases, including diabetes, colon cancers, diarrhea, and chronic renal and hepatic diseases. |
| T3 | 246-389 | Sentence | denotes | Variations in starch biosynthesis enzymes could contribute to the high content of resistant starch in some cultivars of rice (Oryza sativa L.). |
| T4 | 390-684 | Sentence | denotes | Our previously published work indicated that the sbe3-rs gene in the rice mutant line, 'Jiangtangdao1' was a putative allele of the rice starch branching enzyme gene SBEIIb (previously known as SBE3); sbe3-rs might control the biosynthesis of the high resistant starch content in the rice line. |
| T5 | 685-918 | Sentence | denotes | Biomolecular analysis showed that the activity of SBEs was significantly lower in soluble extracts of immature seeds harvested from 'Jiangtangdao1' 15 days after flowering than in the extracts of the wild-type rice line 'Huaqingdao'. |
| T6 | 919-1038 | Sentence | denotes | We performed gene complementation assays by introducing the wild-type OsSBEIIb into the sbe3-rs mutant 'Jiangtangdao1'. |
| T7 | 1039-1116 | Sentence | denotes | The genetically complemented lines demonstrated restored seed-related traits. |
| T8 | 1117-1284 | Sentence | denotes | The structures of endosperm amylopectin and the morphological and physicochemical properties of the starch granules in the transformants recovered to wild-type levels. |
| T9 | 1285-1431 | Sentence | denotes | This study provides evidence that sbe3-rs is a novel allele of OsSBEIIb, responsible for biosynthesis of high resistant starch in 'Jiangtangdao1'. |