> top > docs > PubMed:2770692 > annotations

PubMed:2770692 JSONTXT

Annnotations TAB JSON ListView MergeView

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 49-60 http://identifiers.org/oryzabase.gene/757 denotes chloroplast
T2 49-60 http://identifiers.org/oryzabase.gene/7333 denotes chloroplast
T3 49-60 http://identifiers.org/oryzabase.gene/730 denotes chloroplast
T4 49-60 http://identifiers.org/oryzabase.gene/6056 denotes chloroplast
T5 217-228 http://identifiers.org/oryzabase.gene/757 denotes chloroplast
T6 217-228 http://identifiers.org/oryzabase.gene/7333 denotes chloroplast
T7 217-228 http://identifiers.org/oryzabase.gene/730 denotes chloroplast
T8 217-228 http://identifiers.org/oryzabase.gene/6056 denotes chloroplast
T9 311-313 http://identifiers.org/oryzabase.gene/870 denotes bp
T10 442-453 http://identifiers.org/oryzabase.gene/757 denotes chloroplast
T11 442-453 http://identifiers.org/oryzabase.gene/7333 denotes chloroplast
T12 442-453 http://identifiers.org/oryzabase.gene/730 denotes chloroplast
T13 442-453 http://identifiers.org/oryzabase.gene/6056 denotes chloroplast
T14 779-785 http://identifiers.org/oryzabase.gene/11165 denotes absent
T15 951-962 http://identifiers.org/oryzabase.gene/757 denotes chloroplast
T16 951-962 http://identifiers.org/oryzabase.gene/7333 denotes chloroplast
T17 951-962 http://identifiers.org/oryzabase.gene/730 denotes chloroplast
T18 951-962 http://identifiers.org/oryzabase.gene/6056 denotes chloroplast
T11748 49-60 http://identifiers.org/ricegap/LOC_Os09g17740 denotes chloroplast
T1271 49-60 http://identifiers.org/ricegap/LOC_Os06g51084 denotes chloroplast
T34863 49-60 http://identifiers.org/ricegap/LOC_Os06g12450 denotes chloroplast
T41300 49-60 http://identifiers.org/ricegap/LOC_Os04g56400 denotes chloroplast
T10547 217-228 http://identifiers.org/ricegap/LOC_Os09g17740 denotes chloroplast
T95479 217-228 http://identifiers.org/ricegap/LOC_Os06g51084 denotes chloroplast
T33352 217-228 http://identifiers.org/ricegap/LOC_Os06g12450 denotes chloroplast
T3095 217-228 http://identifiers.org/ricegap/LOC_Os04g56400 denotes chloroplast
T60314 442-453 http://identifiers.org/ricegap/LOC_Os09g17740 denotes chloroplast
T75460 442-453 http://identifiers.org/ricegap/LOC_Os06g51084 denotes chloroplast
T9899 442-453 http://identifiers.org/ricegap/LOC_Os06g12450 denotes chloroplast
T32506 442-453 http://identifiers.org/ricegap/LOC_Os04g56400 denotes chloroplast
T34562 779-785 http://identifiers.org/ricegap/LOC_Os02g34850 denotes absent
T37656 951-962 http://identifiers.org/ricegap/LOC_Os09g17740 denotes chloroplast
T93382 951-962 http://identifiers.org/ricegap/LOC_Os06g51084 denotes chloroplast
T55990 951-962 http://identifiers.org/ricegap/LOC_Os06g12450 denotes chloroplast
T67666 951-962 http://identifiers.org/ricegap/LOC_Os04g56400 denotes chloroplast
T96446 49-60 http://identifiers.org/rapdb.locus/Os09g0346500 denotes chloroplast
T28291 49-60 http://identifiers.org/rapdb.locus/Os06g0726400 denotes chloroplast
T84031 49-60 http://identifiers.org/rapdb.locus/Os06g0229800 denotes chloroplast
T77058 49-60 http://identifiers.org/rapdb.locus/Os04g0659100 denotes chloroplast
T13261 217-228 http://identifiers.org/rapdb.locus/Os09g0346500 denotes chloroplast
T13328 217-228 http://identifiers.org/rapdb.locus/Os06g0726400 denotes chloroplast
T77585 217-228 http://identifiers.org/rapdb.locus/Os06g0229800 denotes chloroplast
T82745 217-228 http://identifiers.org/rapdb.locus/Os04g0659100 denotes chloroplast
T67397 442-453 http://identifiers.org/rapdb.locus/Os09g0346500 denotes chloroplast
T12063 442-453 http://identifiers.org/rapdb.locus/Os06g0726400 denotes chloroplast
T64106 442-453 http://identifiers.org/rapdb.locus/Os06g0229800 denotes chloroplast
T83143 442-453 http://identifiers.org/rapdb.locus/Os04g0659100 denotes chloroplast
T61625 779-785 http://identifiers.org/rapdb.locus/Os02g0554000 denotes absent
T60173 951-962 http://identifiers.org/rapdb.locus/Os09g0346500 denotes chloroplast
T21414 951-962 http://identifiers.org/rapdb.locus/Os06g0726400 denotes chloroplast
T44907 951-962 http://identifiers.org/rapdb.locus/Os06g0229800 denotes chloroplast
T21996 951-962 http://identifiers.org/rapdb.locus/Os04g0659100 denotes chloroplast
T99202 49-60 http://identifiers.org/uniprot/Q0DDE3 denotes chloroplast
T23992 49-60 http://identifiers.org/uniprot/Q01HZ7 denotes chloroplast
T53022 49-60 http://identifiers.org/uniprot/Q01401 denotes chloroplast
T59131 49-60 http://identifiers.org/uniprot/P14655-2 denotes chloroplast
T88803 49-60 http://identifiers.org/uniprot/P14655 denotes chloroplast
T54556 49-60 http://identifiers.org/uniprot/P12330 denotes chloroplast
T81898 49-60 http://identifiers.org/uniprot/D0TZI4 denotes chloroplast
T44766 49-60 http://identifiers.org/uniprot/A3BFK2 denotes chloroplast
T29535 217-228 http://identifiers.org/uniprot/Q0DDE3 denotes chloroplast
T58173 217-228 http://identifiers.org/uniprot/Q01HZ7 denotes chloroplast
T96302 217-228 http://identifiers.org/uniprot/Q01401 denotes chloroplast
T667 217-228 http://identifiers.org/uniprot/P14655-2 denotes chloroplast
T79768 217-228 http://identifiers.org/uniprot/P14655 denotes chloroplast
T12674 217-228 http://identifiers.org/uniprot/P12330 denotes chloroplast
T82768 217-228 http://identifiers.org/uniprot/D0TZI4 denotes chloroplast
T74969 217-228 http://identifiers.org/uniprot/A3BFK2 denotes chloroplast
T19762 442-453 http://identifiers.org/uniprot/Q0DDE3 denotes chloroplast
T99837 442-453 http://identifiers.org/uniprot/Q01HZ7 denotes chloroplast
T19 442-453 http://identifiers.org/uniprot/Q01401 denotes chloroplast
T20 442-453 http://identifiers.org/uniprot/P14655-2 denotes chloroplast
T21 442-453 http://identifiers.org/uniprot/P14655 denotes chloroplast
T22 442-453 http://identifiers.org/uniprot/P12330 denotes chloroplast
T23 442-453 http://identifiers.org/uniprot/D0TZI4 denotes chloroplast
T24 442-453 http://identifiers.org/uniprot/A3BFK2 denotes chloroplast
T25 951-962 http://identifiers.org/uniprot/Q0DDE3 denotes chloroplast
T26 951-962 http://identifiers.org/uniprot/Q01HZ7 denotes chloroplast
T27 951-962 http://identifiers.org/uniprot/Q01401 denotes chloroplast
T28 951-962 http://identifiers.org/uniprot/P14655-2 denotes chloroplast
T29 951-962 http://identifiers.org/uniprot/P14655 denotes chloroplast
T30 951-962 http://identifiers.org/uniprot/P12330 denotes chloroplast
T31 951-962 http://identifiers.org/uniprot/D0TZI4 denotes chloroplast
T32 951-962 http://identifiers.org/uniprot/A3BFK2 denotes chloroplast
M_0 465-470 hunflair:NA:Species denotes dicot
M_1 481-498 hunflair:NA:Species denotes Nicotiana tabacum
M_2 35-47 hunflair:NA:Species denotes Oryza sativa
M_3 257-269 hunflair:NA:Species denotes Oryza sativa
M_4 675-685 hunflair:NA:Species denotes N. tabacum
M_5 472-479 hunflair:NA:Species denotes tobacco
M_6 626-633 hunflair:NA:Species denotes tobacco
M_7 902-909 hunflair:NA:Species denotes tobacco
M_8 1060-1067 hunflair:NA:Species denotes tobacco
M_9 29-33 hunflair:NA:Species denotes rice
M_10 251-255 hunflair:NA:Species denotes rice
M_11 408-412 hunflair:NA:Species denotes rice
M_12 617-621 hunflair:NA:Species denotes rice
M_13 733-737 hunflair:NA:Species denotes rice
M_14 789-793 hunflair:NA:Species denotes rice
M_15 518-539 hunflair:NA:Species denotes Marchantia polymorpha
M_16 690-703 hunflair:NA:Species denotes M. polymorpha

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 465-470 hunflair:NA:Species denotes dicot
M_1 481-498 hunflair:NA:Species denotes Nicotiana tabacum
M_2 35-47 hunflair:NA:Species denotes Oryza sativa
M_3 257-269 hunflair:NA:Species denotes Oryza sativa
M_4 675-685 hunflair:NA:Species denotes N. tabacum
M_5 472-479 hunflair:NA:Species denotes tobacco
M_6 626-633 hunflair:NA:Species denotes tobacco
M_7 902-909 hunflair:NA:Species denotes tobacco
M_8 1060-1067 hunflair:NA:Species denotes tobacco
M_9 29-33 hunflair:NA:Species denotes rice
M_10 251-255 hunflair:NA:Species denotes rice
M_11 408-412 hunflair:NA:Species denotes rice
M_12 617-621 hunflair:NA:Species denotes rice
M_13 733-737 hunflair:NA:Species denotes rice
M_14 789-793 hunflair:NA:Species denotes rice
M_15 518-539 hunflair:NA:Species denotes Marchantia polymorpha
M_16 690-703 hunflair:NA:Species denotes M. polymorpha

OryzaGP

Id Subject Object Predicate Lexical cue
T1 34-207 gene denotes (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. T
T2 568-572 gene denotes tRNA
T3 951-962 gene denotes chloroplast

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-205 Sentence denotes The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals.
T2 206-314 Sentence denotes The entire chloroplast genome of the monocot rice (Oryza sativa) has been sequenced and comprises 134525 bp.
T3 315-541 Sentence denotes Predicted genes have been identified along with open reading frames (ORFs) conserved between rice and the previously sequenced chloroplast genomes, a dicot, tobacco (Nicotiana tabacum), and a liverwort (Marchantia polymorpha).
T4 542-634 Sentence denotes The same complement of 30 tRNA and 4 rRNA genes has been conserved between rice and tobacco.
T5 635-738 Sentence denotes Most ORFs extensively conserved between N. tabacum and M. polymorpha are also conserved intact in rice.
T6 739-838 Sentence denotes However, several such ORFs are entirely absent in rice, or present only in severely truncated form.
T7 839-910 Sentence denotes Structural changes are also apparent in the genome relative to tobacco.
T8 911-1196 Sentence denotes The inverted repeats, characteristic of chloroplast genome structure, have expanded outward to include several genes present only once per genome in tobacco and liverwort and the large single copy region has undergone a series of inversions which predate the divergence of the cereals.
T9 1197-1512 Sentence denotes A chimeric tRNA pseudogene overlaps an apparent endpoint of the largest inversion, and a model invoking illegitimate recombination between tRNA genes is proposed which accounts simultaneously for the origin of this pseudogene, the large inversion and the creation of repeated sequences near the inversion endpoints.