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21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 1013-1019 funRiceGene:361 denotes stress
M_1 1150-1156 funRiceGene:361 denotes stress
M_2 1240-1246 funRiceGene:361 denotes stress
M_3 1275-1281 funRiceGene:361 denotes stress
M_4 1324-1330 funRiceGene:361 denotes stress
M_5 2108-2114 funRiceGene:361 denotes stress
M_6 446-455 funRiceGene:214 denotes tolerance
M_7 1511-1520 funRiceGene:214 denotes tolerance
M_8 531-540 funRiceGene:507 denotes seedlings
M_9 1161-1168 funRiceGene:445 denotes defence
M_10 364-368 WTO:0000152 denotes heat
M_11 2091-2095 WTO:0000152 denotes heat
M_12 1604-1608 PO:0025034, funRiceGene:469 denotes leaf
M_13 1597-1608 xzyao:12249 denotes mature leaf
M_14 1005-1019 funRiceGene:22, xzyao:11632 denotes drought stress
M_15 1316-1330 funRiceGene:22, xzyao:11632 denotes drought stress
M_16 1503-1520 TO:0000276, funRiceGene:56, xzyao:15993 denotes drought tolerance
M_17 1161-1177 funRiceGene:426, xzyao:10587 denotes defence response
M_18 633-640 WTO:0000218, funRiceGene:356 denotes drought
M_19 1005-1012 WTO:0000218, funRiceGene:356 denotes drought
M_20 1316-1323 WTO:0000218, funRiceGene:356 denotes drought
M_21 1503-1510 WTO:0000218, funRiceGene:356 denotes drought
M_22 1694-1701 WTO:0000218, funRiceGene:356 denotes drought
M_23 1713-1720 WTO:0000218, funRiceGene:356 denotes drought
M_24 2100-2114 funRiceGene:37, xzyao:11179 denotes osmotic stress
M_25 49-53 hunflair:NA:Species denotes rice
M_26 380-384 hunflair:NA:Species denotes rice
M_27 1471-1475 hunflair:NA:Species denotes rice
M_28 2138-2147 hunflair:NA:Chemical denotes porphyrin
M_29 1367-1378 hunflair:NA:Chemical denotes chlorophyll
M_30 2152-2163 hunflair:NA:Chemical denotes chlorophyll
M_31 187-201 hunflair:NA:Gene denotes ClpD1 protease
M_32 1985-1999 hunflair:NA:Gene denotes ClpD1 protease
M_33 483-490 hunflair:NA:Gene denotes IAC1131
M_34 1055-1062 hunflair:NA:Gene denotes IAC1131
M_35 1542-1556 pubtator:MESH:D014869:Disease denotes water deficits
M_36 1367-1378 pubtator:MESH:D002734:Chemical denotes chlorophyll
M_37 2152-2163 pubtator:MESH:D002734:Chemical denotes chlorophyll
M_38 49-53 pubtator:4530:Species denotes rice
M_39 380-384 pubtator:4530:Species denotes rice
M_40 1471-1475 pubtator:4530:Species denotes rice
M_41 2138-2147 pubtator:MESH:D011166:Chemical denotes porphyrin
M_42 215-219 pubtator:4530:Species denotes Rice

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 187-192 http://identifiers.org/oryzabase.gene/8950 denotes ClpD1
T2 886-888 http://identifiers.org/oryzabase.gene/2945 denotes GO
T3 1985-1990 http://identifiers.org/oryzabase.gene/8950 denotes ClpD1
T33133 187-192 http://identifiers.org/rapdb.locus/Os02g0526400 denotes ClpD1
T1869 886-888 http://identifiers.org/rapdb.locus/Os03g0790600 denotes GO
T12478 1985-1990 http://identifiers.org/rapdb.locus/Os02g0526400 denotes ClpD1

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 380-394 xzyao:4696 denotes rice cultivars
M_1 1005-1030 xzyao:7744 denotes drought stress resistance
M_2 1020-1030 funRiceGene:228 denotes resistance
M_3 1240-1256 xzyao:18351 denotes stress responses
M_4 2108-2123 funRiceGene:25, xzyao:5394 denotes stress response
M_5 1161-1168 funRiceGene:445 denotes defence
M_6 2164-2185 xzyao:9281 denotes biosynthesis pathways
M_7 686-699 xzyao:19228 denotes Mature leaves
M_8 2100-2114 funRiceGene:37, xzyao:28782 denotes osmotic stress
M_9 1161-1177 funRiceGene:426, xzyao:40974 denotes defence response
M_10 871-884 xzyao:3712 denotes Gene Ontology
M_11 1005-1019 funRiceGene:22, xzyao:11796 denotes drought stress
M_12 1316-1330 funRiceGene:22, xzyao:11796 denotes drought stress
M_13 364-368 WTO:0000152 denotes heat
M_14 2091-2095 WTO:0000152 denotes heat
M_15 164-183 xzyao:7117 denotes increased abundance
M_16 1604-1608 PO:0025034, funRiceGene:469 denotes leaf
M_17 1013-1030 xzyao:8041 denotes stress resistance
M_18 1282-1298 xzyao:11659 denotes tolerant variety
M_19 376-384 xzyao:34142 denotes Two rice
M_20 1467-1475 xzyao:34142 denotes two rice
M_21 1013-1019 funRiceGene:361 denotes stress
M_22 1150-1156 funRiceGene:361 denotes stress
M_23 1240-1246 funRiceGene:361 denotes stress
M_24 1275-1281 funRiceGene:361 denotes stress
M_25 1324-1330 funRiceGene:361 denotes stress
M_26 2108-2114 funRiceGene:361 denotes stress
M_27 531-540 funRiceGene:507 denotes seedlings
M_28 135-159 xzyao:14590 denotes photosynthetic machinery
M_29 2237-2261 xzyao:14590 denotes photosynthetic machinery
M_30 77-94 TO:0000276, funRiceGene:56, xzyao:34997 denotes drought tolerance
M_31 1503-1520 TO:0000276, funRiceGene:56, xzyao:34997 denotes drought tolerance
M_32 77-84 WTO:0000218, funRiceGene:356 denotes drought
M_33 459-466 WTO:0000218, funRiceGene:356 denotes drought
M_34 633-640 WTO:0000218, funRiceGene:356 denotes drought
M_35 1005-1012 WTO:0000218, funRiceGene:356 denotes drought
M_36 1316-1323 WTO:0000218, funRiceGene:356 denotes drought
M_37 1503-1510 WTO:0000218, funRiceGene:356 denotes drought
M_38 1694-1701 WTO:0000218, funRiceGene:356 denotes drought
M_39 1713-1720 WTO:0000218, funRiceGene:356 denotes drought
M_40 2026-2033 WTO:0000218, funRiceGene:356 denotes drought
M_41 1935-1948 xzyao:11465 denotes water deficit
M_42 1005-1020 funRiceGene:411 denotes drought stress
M_43 1316-1331 funRiceGene:411 denotes drought stress
M_44 85-94 funRiceGene:214 denotes tolerance
M_45 446-455 funRiceGene:214 denotes tolerance
M_46 1511-1520 funRiceGene:214 denotes tolerance
M_47 1367-1391 xzyao:43327 denotes chlorophyll biosynthesis
M_48 2152-2176 xzyao:43327 denotes chlorophyll biosynthesis
M_49 187-201 hunflair:NA:Gene denotes ClpD1 protease
M_50 1985-1999 hunflair:NA:Gene denotes ClpD1 protease
M_51 1367-1378 hunflair:NA:Chemical denotes chlorophyll
M_52 2152-2163 hunflair:NA:Chemical denotes chlorophyll
M_53 2138-2147 hunflair:NA:Chemical denotes porphyrin
M_54 483-490 hunflair:NA:Gene denotes IAC1131
M_55 1055-1062 hunflair:NA:Gene denotes IAC1131
M_56 49-53 hunflair:NA:Species denotes rice
M_57 380-384 hunflair:NA:Species denotes rice
M_58 1471-1475 hunflair:NA:Species denotes rice
M_59 2138-2147 pubtator:MESH:D011166:Chemical denotes porphyrin
M_60 215-219 pubtator:4530:Species denotes Rice
M_61 1542-1556 pubtator:MESH:D014869:Disease denotes water deficits
M_62 1367-1378 pubtator:MESH:D002734:Chemical denotes chlorophyll
M_63 2152-2163 pubtator:MESH:D002734:Chemical denotes chlorophyll
M_64 49-53 pubtator:4530:Species denotes rice
M_65 380-384 pubtator:4530:Species denotes rice
M_66 1471-1475 pubtator:4530:Species denotes rice

sentences

Id Subject Object Predicate Lexical cue
T1 0-202 Sentence denotes Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease.
T2 203-214 Sentence denotes UNLABELLED:
T3 215-286 Sentence denotes Rice is the major staple food for more than half of world's population.
T4 287-375 Sentence denotes As global climate changes, we are observing more floods, droughts and severe heat waves.
T5 376-516 Sentence denotes Two rice cultivars with contrasting genetic backgrounds and levels of tolerance to drought, Nipponbare and IAC1131, were used in this study.
T6 517-685 Sentence denotes Four-week-old seedlings of both cultivars were grown in large soil volumes and then exposed to moderate and extreme drought for 7days, followed by 3days of re-watering.
T7 686-870 Sentence denotes Mature leaves were harvested from plants from each treatment for protein extraction and subsequent shotgun proteomic analysis, with validation of selected proteins by western blotting.
T8 871-1031 Sentence denotes Gene Ontology (GO) annotations of differentially expressed proteins provide insights into the metabolic pathways that are involved in drought stress resistance.
T9 1032-1195 Sentence denotes Our data indicate that IAC1131 appears to be better able to cope with stressful conditions by upregulating a suite of stress and defence response related proteins.
T10 1196-1437 Sentence denotes Nipponbare, in contrast, lacks the range of stress responses shown by the more stress tolerant variety, and responds to drought stress by initiating a partial shutdown of chlorophyll biosynthesis in an apparent attempt to preserve resources.
T11 1438-1451 Sentence denotes SIGNIFICANCE:
T12 1452-1617 Sentence denotes In this study, two rice genotypes with contrasting drought tolerance were exposed to soil water deficits, and proteomic changes were observed in mature leaf laminae.
T13 1618-1756 Sentence denotes Plants were well watered and then switched to conditions of either moderate drought or extreme drought followed by three days of recovery.
T14 1757-1863 Sentence denotes Proteins were identified and quantified using both label-free and Tandem Mass Tag multiplexing approaches.
T15 1864-1949 Sentence denotes Several biochemical pathways were significantly altered in response to water deficit.
T16 1950-2124 Sentence denotes Most notably, the up-regulation of ClpD1 protease responded strongly in the drought-tolerant landrace; this protein is typically involved in heat and osmotic stress response.
T17 2125-2262 Sentence denotes In contrast, porphyrin and chlorophyll biosynthesis pathways were down-regulated, indicating suppression of the photosynthetic machinery.
T1 0-202 Sentence denotes Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease.
T2 203-214 Sentence denotes UNLABELLED:
T3 215-286 Sentence denotes Rice is the major staple food for more than half of world's population.
T4 287-375 Sentence denotes As global climate changes, we are observing more floods, droughts and severe heat waves.
T5 376-516 Sentence denotes Two rice cultivars with contrasting genetic backgrounds and levels of tolerance to drought, Nipponbare and IAC1131, were used in this study.
T6 517-685 Sentence denotes Four-week-old seedlings of both cultivars were grown in large soil volumes and then exposed to moderate and extreme drought for 7days, followed by 3days of re-watering.
T7 686-870 Sentence denotes Mature leaves were harvested from plants from each treatment for protein extraction and subsequent shotgun proteomic analysis, with validation of selected proteins by western blotting.
T8 871-1031 Sentence denotes Gene Ontology (GO) annotations of differentially expressed proteins provide insights into the metabolic pathways that are involved in drought stress resistance.
T9 1032-1195 Sentence denotes Our data indicate that IAC1131 appears to be better able to cope with stressful conditions by upregulating a suite of stress and defence response related proteins.
T10 1196-1437 Sentence denotes Nipponbare, in contrast, lacks the range of stress responses shown by the more stress tolerant variety, and responds to drought stress by initiating a partial shutdown of chlorophyll biosynthesis in an apparent attempt to preserve resources.
T11 1438-1451 Sentence denotes SIGNIFICANCE:
T12 1452-1617 Sentence denotes In this study, two rice genotypes with contrasting drought tolerance were exposed to soil water deficits, and proteomic changes were observed in mature leaf laminae.
T13 1618-1756 Sentence denotes Plants were well watered and then switched to conditions of either moderate drought or extreme drought followed by three days of recovery.
T14 1757-1863 Sentence denotes Proteins were identified and quantified using both label-free and Tandem Mass Tag multiplexing approaches.
T15 1864-1949 Sentence denotes Several biochemical pathways were significantly altered in response to water deficit.
T16 1950-2124 Sentence denotes Most notably, the up-regulation of ClpD1 protease responded strongly in the drought-tolerant landrace; this protein is typically involved in heat and osmotic stress response.
T17 2125-2262 Sentence denotes In contrast, porphyrin and chlorophyll biosynthesis pathways were down-regulated, indicating suppression of the photosynthetic machinery.

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 1367-1378 hunflair:NA:Chemical denotes chlorophyll
M_1 2152-2163 hunflair:NA:Chemical denotes chlorophyll
M_2 483-490 hunflair:NA:Gene denotes IAC1131
M_3 1055-1062 hunflair:NA:Gene denotes IAC1131
M_4 49-53 hunflair:NA:Species denotes rice
M_5 380-384 hunflair:NA:Species denotes rice
M_6 1471-1475 hunflair:NA:Species denotes rice
M_7 2138-2147 hunflair:NA:Chemical denotes porphyrin
M_8 187-201 hunflair:NA:Gene denotes ClpD1 protease
M_9 1985-1999 hunflair:NA:Gene denotes ClpD1 protease

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 187-192 http://identifiers.org/oryzabase.gene/8950 denotes ClpD1
T2 673-675 http://identifiers.org/oryzabase.gene/8905 denotes re
T3 886-888 http://identifiers.org/oryzabase.gene/2945 denotes GO
T4 1985-1990 http://identifiers.org/oryzabase.gene/8950 denotes ClpD1
T44287 187-192 http://identifiers.org/ricegap/LOC_Os02g32520 denotes ClpD1
T42778 886-888 http://identifiers.org/ricegap/LOC_Os03g57670 denotes GO
T25093 886-888 http://identifiers.org/ricegap/LOC_Os03g57660 denotes GO
T43888 920-938 http://identifiers.org/ricegap/LOC_Os06g47230 denotes expressed proteins
T5 920-938 http://identifiers.org/ricegap/LOC_Os05g08980 denotes expressed proteins
T6 920-938 http://identifiers.org/ricegap/LOC_Os03g35920 denotes expressed proteins
T7 920-938 http://identifiers.org/ricegap/LOC_Os02g07240 denotes expressed proteins
T8 920-938 http://identifiers.org/ricegap/LOC_Os01g04080 denotes expressed proteins
T9 1985-1990 http://identifiers.org/ricegap/LOC_Os02g32520 denotes ClpD1
T10947 187-192 http://identifiers.org/rapdb.locus/Os02g0526400 denotes ClpD1
T52687 673-675 http://identifiers.org/rapdb.locus/Os04g0164900 denotes re
T35840 886-888 http://identifiers.org/rapdb.locus/Os03g0790600 denotes GO
T18633 920-938 http://identifiers.org/rapdb.locus/Os06g0686700 denotes expressed proteins
T9639 920-938 http://identifiers.org/rapdb.locus/Os05g0182700 denotes expressed proteins
T60790 920-938 http://identifiers.org/rapdb.locus/Os03g0558700 denotes expressed proteins
T15080 920-938 http://identifiers.org/rapdb.locus/Os02g0168900 denotes expressed proteins
T74095 920-938 http://identifiers.org/rapdb.locus/Os01g0132200 denotes expressed proteins
T20512 1985-1990 http://identifiers.org/rapdb.locus/Os02g0526400 denotes ClpD1
T69350 187-192 http://identifiers.org/uniprot/A3A7I6 denotes ClpD1
T31025 886-888 http://identifiers.org/uniprot/Q852M4 denotes GO
T78130 886-888 http://identifiers.org/refseq/NP_001120724.1 denotes GO
T75649 1985-1990 http://identifiers.org/uniprot/A3A7I6 denotes ClpD1
M_0 1367-1378 hunflair:NA:Chemical denotes chlorophyll
M_1 2152-2163 hunflair:NA:Chemical denotes chlorophyll
M_2 483-490 hunflair:NA:Gene denotes IAC1131
M_3 1055-1062 hunflair:NA:Gene denotes IAC1131
M_4 49-53 hunflair:NA:Species denotes rice
M_5 380-384 hunflair:NA:Species denotes rice
M_6 1471-1475 hunflair:NA:Species denotes rice
M_7 2138-2147 hunflair:NA:Chemical denotes porphyrin
M_8 187-201 hunflair:NA:Gene denotes ClpD1 protease
M_9 1985-1999 hunflair:NA:Gene denotes ClpD1 protease

OryzaGP

Id Subject Object Predicate Lexical cue
T1 187-192 gene denotes ClpD1

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-202 Sentence denotes Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease.
T2 203-214 Sentence denotes UNLABELLED:
T3 215-286 Sentence denotes Rice is the major staple food for more than half of world's population.
T4 287-375 Sentence denotes As global climate changes, we are observing more floods, droughts and severe heat waves.
T5 376-516 Sentence denotes Two rice cultivars with contrasting genetic backgrounds and levels of tolerance to drought, Nipponbare and IAC1131, were used in this study.
T6 517-685 Sentence denotes Four-week-old seedlings of both cultivars were grown in large soil volumes and then exposed to moderate and extreme drought for 7days, followed by 3days of re-watering.
T7 686-870 Sentence denotes Mature leaves were harvested from plants from each treatment for protein extraction and subsequent shotgun proteomic analysis, with validation of selected proteins by western blotting.
T8 871-1031 Sentence denotes Gene Ontology (GO) annotations of differentially expressed proteins provide insights into the metabolic pathways that are involved in drought stress resistance.
T9 1032-1195 Sentence denotes Our data indicate that IAC1131 appears to be better able to cope with stressful conditions by upregulating a suite of stress and defence response related proteins.
T10 1196-1437 Sentence denotes Nipponbare, in contrast, lacks the range of stress responses shown by the more stress tolerant variety, and responds to drought stress by initiating a partial shutdown of chlorophyll biosynthesis in an apparent attempt to preserve resources.
T11 1438-1451 Sentence denotes SIGNIFICANCE:
T12 1452-1617 Sentence denotes In this study, two rice genotypes with contrasting drought tolerance were exposed to soil water deficits, and proteomic changes were observed in mature leaf laminae.
T13 1618-1756 Sentence denotes Plants were well watered and then switched to conditions of either moderate drought or extreme drought followed by three days of recovery.
T14 1757-1863 Sentence denotes Proteins were identified and quantified using both label-free and Tandem Mass Tag multiplexing approaches.
T15 1864-1949 Sentence denotes Several biochemical pathways were significantly altered in response to water deficit.
T16 1950-2124 Sentence denotes Most notably, the up-regulation of ClpD1 protease responded strongly in the drought-tolerant landrace; this protein is typically involved in heat and osmotic stress response.
T17 2125-2262 Sentence denotes In contrast, porphyrin and chlorophyll biosynthesis pathways were down-regulated, indicating suppression of the photosynthetic machinery.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-202 Sentence denotes Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease.
T2 203-214 Sentence denotes UNLABELLED:
T3 215-286 Sentence denotes Rice is the major staple food for more than half of world's population.
T4 287-375 Sentence denotes As global climate changes, we are observing more floods, droughts and severe heat waves.
T5 376-516 Sentence denotes Two rice cultivars with contrasting genetic backgrounds and levels of tolerance to drought, Nipponbare and IAC1131, were used in this study.
T6 517-685 Sentence denotes Four-week-old seedlings of both cultivars were grown in large soil volumes and then exposed to moderate and extreme drought for 7days, followed by 3days of re-watering.
T7 686-870 Sentence denotes Mature leaves were harvested from plants from each treatment for protein extraction and subsequent shotgun proteomic analysis, with validation of selected proteins by western blotting.
T8 871-1031 Sentence denotes Gene Ontology (GO) annotations of differentially expressed proteins provide insights into the metabolic pathways that are involved in drought stress resistance.
T9 1032-1195 Sentence denotes Our data indicate that IAC1131 appears to be better able to cope with stressful conditions by upregulating a suite of stress and defence response related proteins.
T10 1196-1437 Sentence denotes Nipponbare, in contrast, lacks the range of stress responses shown by the more stress tolerant variety, and responds to drought stress by initiating a partial shutdown of chlorophyll biosynthesis in an apparent attempt to preserve resources.
T11 1438-1451 Sentence denotes SIGNIFICANCE:
T12 1452-1617 Sentence denotes In this study, two rice genotypes with contrasting drought tolerance were exposed to soil water deficits, and proteomic changes were observed in mature leaf laminae.
T13 1618-1756 Sentence denotes Plants were well watered and then switched to conditions of either moderate drought or extreme drought followed by three days of recovery.
T14 1757-1863 Sentence denotes Proteins were identified and quantified using both label-free and Tandem Mass Tag multiplexing approaches.
T15 1864-1949 Sentence denotes Several biochemical pathways were significantly altered in response to water deficit.
T16 1950-2124 Sentence denotes Most notably, the up-regulation of ClpD1 protease responded strongly in the drought-tolerant landrace; this protein is typically involved in heat and osmotic stress response.
T17 2125-2262 Sentence denotes In contrast, porphyrin and chlorophyll biosynthesis pathways were down-regulated, indicating suppression of the photosynthetic machinery.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-202 Sentence denotes Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease.
T2 203-214 Sentence denotes UNLABELLED:
T3 215-286 Sentence denotes Rice is the major staple food for more than half of world's population.
T4 287-375 Sentence denotes As global climate changes, we are observing more floods, droughts and severe heat waves.
T5 376-516 Sentence denotes Two rice cultivars with contrasting genetic backgrounds and levels of tolerance to drought, Nipponbare and IAC1131, were used in this study.
T6 517-685 Sentence denotes Four-week-old seedlings of both cultivars were grown in large soil volumes and then exposed to moderate and extreme drought for 7days, followed by 3days of re-watering.
T7 686-870 Sentence denotes Mature leaves were harvested from plants from each treatment for protein extraction and subsequent shotgun proteomic analysis, with validation of selected proteins by western blotting.
T8 871-1031 Sentence denotes Gene Ontology (GO) annotations of differentially expressed proteins provide insights into the metabolic pathways that are involved in drought stress resistance.
T9 1032-1195 Sentence denotes Our data indicate that IAC1131 appears to be better able to cope with stressful conditions by upregulating a suite of stress and defence response related proteins.
T10 1196-1437 Sentence denotes Nipponbare, in contrast, lacks the range of stress responses shown by the more stress tolerant variety, and responds to drought stress by initiating a partial shutdown of chlorophyll biosynthesis in an apparent attempt to preserve resources.
T11 1438-1451 Sentence denotes SIGNIFICANCE:
T12 1452-1617 Sentence denotes In this study, two rice genotypes with contrasting drought tolerance were exposed to soil water deficits, and proteomic changes were observed in mature leaf laminae.
T13 1618-1756 Sentence denotes Plants were well watered and then switched to conditions of either moderate drought or extreme drought followed by three days of recovery.
T14 1757-1863 Sentence denotes Proteins were identified and quantified using both label-free and Tandem Mass Tag multiplexing approaches.
T15 1864-1949 Sentence denotes Several biochemical pathways were significantly altered in response to water deficit.
T16 1950-2124 Sentence denotes Most notably, the up-regulation of ClpD1 protease responded strongly in the drought-tolerant landrace; this protein is typically involved in heat and osmotic stress response.
T17 2125-2262 Sentence denotes In contrast, porphyrin and chlorophyll biosynthesis pathways were down-regulated, indicating suppression of the photosynthetic machinery.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-202 Sentence denotes Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease.
T2 203-214 Sentence denotes UNLABELLED:
T3 215-286 Sentence denotes Rice is the major staple food for more than half of world's population.
T4 287-375 Sentence denotes As global climate changes, we are observing more floods, droughts and severe heat waves.
T5 376-516 Sentence denotes Two rice cultivars with contrasting genetic backgrounds and levels of tolerance to drought, Nipponbare and IAC1131, were used in this study.
T6 517-685 Sentence denotes Four-week-old seedlings of both cultivars were grown in large soil volumes and then exposed to moderate and extreme drought for 7days, followed by 3days of re-watering.
T7 686-870 Sentence denotes Mature leaves were harvested from plants from each treatment for protein extraction and subsequent shotgun proteomic analysis, with validation of selected proteins by western blotting.
T8 871-1031 Sentence denotes Gene Ontology (GO) annotations of differentially expressed proteins provide insights into the metabolic pathways that are involved in drought stress resistance.
T9 1032-1195 Sentence denotes Our data indicate that IAC1131 appears to be better able to cope with stressful conditions by upregulating a suite of stress and defence response related proteins.
T10 1196-1437 Sentence denotes Nipponbare, in contrast, lacks the range of stress responses shown by the more stress tolerant variety, and responds to drought stress by initiating a partial shutdown of chlorophyll biosynthesis in an apparent attempt to preserve resources.
T11 1438-1451 Sentence denotes SIGNIFICANCE:
T12 1452-1617 Sentence denotes In this study, two rice genotypes with contrasting drought tolerance were exposed to soil water deficits, and proteomic changes were observed in mature leaf laminae.
T13 1618-1756 Sentence denotes Plants were well watered and then switched to conditions of either moderate drought or extreme drought followed by three days of recovery.
T14 1757-1863 Sentence denotes Proteins were identified and quantified using both label-free and Tandem Mass Tag multiplexing approaches.
T15 1864-1949 Sentence denotes Several biochemical pathways were significantly altered in response to water deficit.
T16 1950-2124 Sentence denotes Most notably, the up-regulation of ClpD1 protease responded strongly in the drought-tolerant landrace; this protein is typically involved in heat and osmotic stress response.
T17 2125-2262 Sentence denotes In contrast, porphyrin and chlorophyll biosynthesis pathways were down-regulated, indicating suppression of the photosynthetic machinery.

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 49-53 OrganismTaxon denotes rice 4530
T2 215-219 OrganismTaxon denotes Rice 4530
T3 380-384 OrganismTaxon denotes rice 4530
T4 1471-1475 OrganismTaxon denotes rice 4530
T5 1609-1616 OrganismTaxon denotes laminae 79514

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1609-1616 Body_part denotes laminae http://purl.obolibrary.org/obo/UBERON_0004529