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PubMed:27193099 JSONTXT

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21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 842-848 funRiceGene:361 denotes stress
M_1 1122-1128 funRiceGene:361 denotes stress
M_2 1405-1422 funRiceGene:374, xzyao:5921 denotes plant development
M_3 797-822 xzyao:3569 denotes plant hormonal regulation
M_4 1099-1107 PO:0008037, funRiceGene:218 denotes seedling
M_5 217-223 WTO:0000021, funRiceGene:221 denotes growth
M_6 211-223 funRiceGene:44, xzyao:2989 denotes plant growth
M_7 1411-1422 WTO:0000011, funRiceGene:359 denotes development
M_8 925-932 WTO:0000218, funRiceGene:356 denotes drought
M_9 883-886 hunflair:NA:Chemical denotes ABA
M_10 1369-1388 hunflair:NA:Gene denotes LecRLKs gene family
M_11 169-176 hunflair:NA:Gene denotes LecRLKs
M_12 662-669 hunflair:NA:Gene denotes LecRLKs
M_13 717-724 hunflair:NA:Gene denotes LecRLKs
M_14 1369-1376 hunflair:NA:Gene denotes LecRLKs
M_15 90-129 hunflair:NA:Gene denotes lectin receptor-like kinase gene family
M_16 133-137 hunflair:NA:Species denotes rice
M_17 657-661 hunflair:NA:Species denotes rice
M_18 1094-1098 hunflair:NA:Species denotes rice
M_19 1400-1404 hunflair:NA:Species denotes rice
M_20 139-167 hunflair:NA:Gene denotes Lectin receptor-like kinases
M_21 1181-1187 hunflair:NA:Gene denotes LecRLK
M_22 133-137 pubtator:4530:Species denotes rice
M_23 657-661 pubtator:4530:Species denotes rice
M_24 1094-1098 pubtator:4530:Species denotes rice
M_25 1400-1404 pubtator:4530:Species denotes rice

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 90-117 http://identifiers.org/oryzabase.gene/15001 denotes lectin receptor-like kinase
T2 139-145 http://identifiers.org/oryzabase.gene/946 denotes Lectin
T3 139-145 http://identifiers.org/oryzabase.gene/13738 denotes Lectin

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 883-886 http://identifiers.org/oryzabase.gene/6003 denotes ABA

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 834-858 cand:PECO:0001037-oxidative stress exposure denotes various stress responses
M_1 834-858 cand:PECO:0001036-chemical stress exposure denotes various stress responses
M_2 834-858 cand:PECO:0001038-osmotic stress exposure denotes various stress responses
M_3 834-858 cand:TO:0000482-chemical stress sensitivity denotes various stress responses
M_4 834-858 cand:funRiceGene:141-oxidative stress denotes various stress responses
M_5 834-858 cand:funRiceGene:326-cold stress denotes various stress responses
M_6 834-858 cand:funRiceGene:442-drought stress response denotes various stress responses
M_7 834-858 cand:funRiceGene:105-Heat Stress Response denotes various stress responses
M_8 834-858 cand:funRiceGene:488-reticulum stress response denotes various stress responses
M_9 834-858 cand:funRiceGene:14-jasmonate response denotes various stress responses
M_10 834-858 cand:funRiceGene:43-stress response denotes various stress responses
M_11 888-912 cand:PO:0000008-root-derived cultured plant cell denotes root-specific expression
M_12 888-912 cand:PO:0025261-pericycle cell denotes root-specific expression
M_13 888-912 cand:PO:0000063-leaf procambial cell denotes root-specific expression
M_14 888-912 cand:PO:0000007-leaf-derived cultured plant cell denotes root-specific expression
M_15 888-912 cand:funRiceGene:21-auxin-mediated root development denotes root-specific expression
M_16 888-912 cand:PO:0025259-leaf procambium denotes root-specific expression
M_17 888-912 cand:WTO:0000535-grain specific weight denotes root-specific expression
M_18 888-912 cand:PO:0030090-root periderm scar denotes root-specific expression
M_19 888-912 cand:TO:0020069-spike exsertion denotes root-specific expression
M_20 888-912 cand:WTO:0000065-anther extrusion denotes root-specific expression
M_21 888-912 cand:funRiceGene:97-osmotic stress denotes root-specific expression
M_22 717-724 GeneID:NA denotes LecRLKs
T13429 1099-1107 PO:0008037, funRiceGene:218 denotes seedling
T18110 1405-1422 funRiceGene:374, xzyao:18955 denotes plant development
T28898 294-309 xzyao:22593 denotes gene regulation
T8227 511-526 xzyao:22593 denotes gene regulation
T14876 321-339 xzyao:17662 denotes cellular functions
T77019 768-779 WTO:0000011, funRiceGene:359 denotes development
T78120 1411-1422 WTO:0000011, funRiceGene:359 denotes development
T95882 111-117 funRiceGene:512 denotes kinase
T92333 111-117 funRiceGene:139 denotes kinase
T67754 888-892 PO:0009005, funRiceGene:362 denotes root
T48838 842-858 xzyao:18351 denotes stress responses
T34504 29-52 xzyao:23355 denotes cis-regulatory elements
T68830 1029-1052 xzyao:23355 denotes cis-regulatory elements
T6617 278-298 xzyao:29757 denotes transcriptional gene
T59019 495-515 xzyao:29757 denotes transcriptional gene
T34534 797-822 xzyao:18932 denotes plant hormonal regulation
T3646 217-223 WTO:0000021, funRiceGene:221 denotes growth
T54569 761-767 WTO:0000021, funRiceGene:221 denotes growth
T90826 97-117 xzyao:42281 denotes receptor-like kinase
T72039 860-877 xzyao:34870 denotes hormonal response
T71143 1094-1107 xzyao:22122 denotes rice seedling
T65770 267-273 funRiceGene:361 denotes stress
T66089 842-848 funRiceGene:361 denotes stress
M_23 1122-1128 funRiceGene:361 denotes stress
M_24 1429-1435 funRiceGene:361 denotes stress
M_25 834-858 xzyao:34425 denotes various stress responses
M_26 883-886 funRiceGene:140 denotes ABA
M_27 925-932 WTO:0000218, funRiceGene:356 denotes drought
M_28 211-223 funRiceGene:44, xzyao:29681 denotes plant growth
M_29 755-767 funRiceGene:44, xzyao:29681 denotes plant growth
M_30 781-795 xzyao:30656 denotes light response
M_31 228-251 xzyao:7465 denotes developmental processes
M_32 888-912 xzyao:29460 denotes root-specific expression
M_33 1400-1422 xzyao:10802 denotes rice plant development
M_34 1122-1139 xzyao:35373 denotes stress conditions
M_35 1400-1410 xzyao:28048 denotes rice plant
M_36 443-464 xzyao:36100 denotes environmental stimuli
M_37 139-167 hunflair:NA:Gene denotes Lectin receptor-like kinases
M_38 90-129 hunflair:NA:Gene denotes lectin receptor-like kinase gene family
M_39 883-886 hunflair:NA:Chemical denotes ABA
M_40 169-176 hunflair:NA:Gene denotes LecRLKs
M_41 662-669 hunflair:NA:Gene denotes LecRLKs
M_42 717-724 hunflair:NA:Gene denotes LecRLKs
M_43 1369-1376 hunflair:NA:Gene denotes LecRLKs
M_44 1181-1187 hunflair:NA:Gene denotes LecRLK
M_45 133-137 hunflair:NA:Species denotes rice
M_46 657-661 hunflair:NA:Species denotes rice
M_47 1094-1098 hunflair:NA:Species denotes rice
M_48 1400-1404 hunflair:NA:Species denotes rice
M_49 1369-1388 hunflair:NA:Gene denotes LecRLKs gene family
M_50 133-137 pubtator:4530:Species denotes rice
M_51 657-661 pubtator:4530:Species denotes rice
M_52 1094-1098 pubtator:4530:Species denotes rice
M_53 1400-1404 pubtator:4530:Species denotes rice

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 1369-1388 hunflair:NA:Gene denotes LecRLKs gene family
M_1 883-886 hunflair:NA:Chemical denotes ABA
M_2 1181-1187 hunflair:NA:Gene denotes LecRLK
M_3 133-137 hunflair:NA:Species denotes rice
M_4 657-661 hunflair:NA:Species denotes rice
M_5 1094-1098 hunflair:NA:Species denotes rice
M_6 1400-1404 hunflair:NA:Species denotes rice
M_7 139-167 hunflair:NA:Gene denotes Lectin receptor-like kinases
M_8 169-176 hunflair:NA:Gene denotes LecRLKs
M_9 662-669 hunflair:NA:Gene denotes LecRLKs
M_10 717-724 hunflair:NA:Gene denotes LecRLKs
M_11 1369-1376 hunflair:NA:Gene denotes LecRLKs
M_12 90-129 hunflair:NA:Gene denotes lectin receptor-like kinase gene family

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 90-117 http://identifiers.org/oryzabase.gene/15001 denotes lectin receptor-like kinase
T2 139-145 http://identifiers.org/oryzabase.gene/946 denotes Lectin
T3 883-886 http://identifiers.org/oryzabase.gene/6003 denotes ABA
T81468 90-96 http://identifiers.org/ricegap/LOC_Os04g09390 denotes lectin
T23159 97-117 http://identifiers.org/ricegap/LOC_Os10g04730 denotes receptor-like kinase
T2826 139-145 http://identifiers.org/ricegap/LOC_Os04g09390 denotes Lectin
T4 146-167 http://identifiers.org/ricegap/LOC_Os10g04730 denotes receptor-like kinases
T5 883-886 http://identifiers.org/ricegap/LOC_Os11g06720 denotes ABA
T6 883-886 http://identifiers.org/ricegap/LOC_Os04g34600 denotes ABA
T7 883-886 http://identifiers.org/ricegap/LOC_Os02g33820 denotes ABA
T8 883-886 http://identifiers.org/ricegap/LOC_Os01g73250 denotes ABA
T9 883-886 http://identifiers.org/ricegap/LOC_Os01g72910 denotes ABA
T10 883-886 http://identifiers.org/ricegap/LOC_Os01g72900 denotes ABA
T58744 90-96 http://identifiers.org/rapdb.locus/Os04g0173800 denotes lectin
T21303 97-117 http://identifiers.org/rapdb.locus/Os10g0136500 denotes receptor-like kinase
T30599 139-145 http://identifiers.org/rapdb.locus/Os04g0173800 denotes Lectin
T13317 146-167 http://identifiers.org/rapdb.locus/Os10g0136500 denotes receptor-like kinases
T59190 883-886 http://identifiers.org/rapdb.locus/Os11g0167800 denotes ABA
T97860 883-886 http://identifiers.org/rapdb.locus/Os04g0423400 denotes ABA
T19636 883-886 http://identifiers.org/rapdb.locus/Os02g0543000 denotes ABA
T84446 883-886 http://identifiers.org/rapdb.locus/Os01g0963600 denotes ABA
T97729 883-886 http://identifiers.org/rapdb.locus/Os01g0959200 denotes ABA
T90134 883-886 http://identifiers.org/rapdb.locus/Os01g0959100 denotes ABA
T58945 90-96 http://identifiers.org/uniprot/Q9XFF2 denotes lectin
T65295 97-117 http://identifiers.org/uniprot/Q33B66 denotes receptor-like kinase
M_0 1369-1388 hunflair:NA:Gene denotes LecRLKs gene family
M_1 883-886 hunflair:NA:Chemical denotes ABA
M_2 1181-1187 hunflair:NA:Gene denotes LecRLK
M_3 133-137 hunflair:NA:Species denotes rice
M_4 657-661 hunflair:NA:Species denotes rice
M_5 1094-1098 hunflair:NA:Species denotes rice
M_6 1400-1404 hunflair:NA:Species denotes rice
M_7 139-167 hunflair:NA:Gene denotes Lectin receptor-like kinases
M_8 169-176 hunflair:NA:Gene denotes LecRLKs
M_9 662-669 hunflair:NA:Gene denotes LecRLKs
M_10 717-724 hunflair:NA:Gene denotes LecRLKs
M_11 1369-1376 hunflair:NA:Gene denotes LecRLKs
M_12 90-129 hunflair:NA:Gene denotes lectin receptor-like kinase gene family

OryzaGP

Id Subject Object Predicate Lexical cue
T1 90-96 gene denotes lectin
T2 139-145 gene denotes Lectin

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-138 Sentence denotes Prediction and validation of cis-regulatory elements in 5' upstream regulatory regions of lectin receptor-like kinase gene family in rice.
T2 139-274 Sentence denotes Lectin receptor-like kinases (LecRLKs) play crucial roles in regulating plant growth and developmental processes in response to stress.
T3 275-465 Sentence denotes In transcriptional gene regulation for normal cellular functions, cis-acting regulatory elements (CREs) direct the temporal and spatial gene expression with respect to environmental stimuli.
T4 466-582 Sentence denotes A complete insightful of the transcriptional gene regulation system relies on effective functional analysis of CREs.
T5 583-704 Sentence denotes Here, we analyzed the potential putative CREs present in the promoters of rice LecRLKs genes by using PlantCARE database.
T6 705-993 Sentence denotes The CREs in LecRLKs promoters are associated with plant growth/development, light response, plant hormonal regulation processes, various stress responses, hormonal response like ABA, root-specific expression responsive, drought responsive, and cell and organ specific regulatory elements.
T7 994-1071 Sentence denotes The effect of methylation on these cis-regulatory elements was also analyzed.
T8 1072-1267 Sentence denotes Real-time analysis of rice seedling under various stress conditions showed the expression levels of selected LecRLK genes superimposing the number of different CREs present in 5' upstream region.
T9 1268-1436 Sentence denotes The overall results showed that the possible CREs function in the selective expression/regulation of LecRLKs gene family and during rice plant development under stress.