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LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 989-994 OrganismTaxon denotes human NCBItxid:9606
T2 1345-1354 OrganismTaxon denotes erythroid NCBItxid:94794

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T11 1097-1375 Sentence denotes We identified the minimal region of the MT1G promoter that confers inducibility by sorafenib to a 133 base pair region containing an Anti-oxidant Response Element (ARE) and showed the essential role of the transcription factor NRF2 (Nuclear factor erythroid 2-Related Factor 2).
T1 0-116 Sentence denotes Metallothionein-1 as a biomarker of altered redox metabolism in hepatocellular carcinoma cells exposed to sorafenib.
T2 117-128 Sentence denotes BACKGROUND:
T3 129-294 Sentence denotes Sorafenib, a kinase inhibitor active against various solid tumours, induces oxidative stress and ferroptosis, a new form of oxidative necrosis, in some cancer cells.
T4 295-417 Sentence denotes Clinically-applicable biomarkers that reflect the impact of sorafenib on the redox metabolism of cancer cells are lacking.
T5 418-426 Sentence denotes METHODS:
T6 427-637 Sentence denotes We used gene expression microarrays, real-time PCR, immunoblot, protein-specific ELISA, and gene reporter constructs encoding the enzyme luciferase to study the response of a panel of cancer cells to sorafenib.
T7 638-796 Sentence denotes Tumour explants prepared from surgical hepatocellular carcinoma (HCC) samples and serum samples obtained from HCC patients receiving sorafenib were also used.
T8 797-805 Sentence denotes RESULTS:
T9 806-926 Sentence denotes We observed that genes of the metallothionein-1 (MT1) family are induced in the HCC cell line Huh7 exposed to sorafenib.
T10 927-1096 Sentence denotes Sorafenib increased the expression of MT1G mRNA in a panel of human cancer cells, an effect that was not observed with eight other clinically-approved kinase inhibitors.
T12 1376-1522 Sentence denotes We examined the clinical relevance of our findings by analysing the regulation of MT1G in five tumour explants prepared from surgical HCC samples.
T13 1523-1692 Sentence denotes Finally, we showed that the protein levels of MT1 increase in the serum of some HCC patients receiving sorafenib, and found an association with reduced overall survival.
T14 1693-1704 Sentence denotes CONCLUSION:
T15 1705-1847 Sentence denotes These findings indicate that MT1 constitute a biomarker adapted for exploring the impact of sorafenib on the redox metabolism of cancer cells.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
11324 0-17 GeneOrGeneProduct denotes Metallothionein-1 NCBIGene:4495
11325 64-88 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma MESH:D006528
11326 106-115 ChemicalEntity denotes sorafenib MESH:D000077157
11327 129-138 ChemicalEntity denotes Sorafenib MESH:D000077157
11328 188-195 DiseaseOrPhenotypicFeature denotes tumours MESH:D009369
11329 263-271 DiseaseOrPhenotypicFeature denotes necrosis MESH:D009336
11330 281-287 DiseaseOrPhenotypicFeature denotes cancer MESH:D009369
11331 355-364 ChemicalEntity denotes sorafenib MESH:D000077157
11332 392-398 DiseaseOrPhenotypicFeature denotes cancer MESH:D009369
11333 611-617 DiseaseOrPhenotypicFeature denotes cancer MESH:D009369
11334 627-636 ChemicalEntity denotes sorafenib MESH:D000077157
11335 638-644 DiseaseOrPhenotypicFeature denotes Tumour MESH:D009369
11336 677-701 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma MESH:D006528
11337 703-706 DiseaseOrPhenotypicFeature denotes HCC MESH:D006528
11338 748-751 DiseaseOrPhenotypicFeature denotes HCC MESH:D006528
11339 752-760 OrganismTaxon denotes patients NCBITaxon:9606
11340 771-780 ChemicalEntity denotes sorafenib MESH:D000077157
11341 836-853 GeneOrGeneProduct denotes metallothionein-1 NCBIGene:4495
11342 855-858 GeneOrGeneProduct denotes MT1 NCBIGene:4495
11343 886-889 DiseaseOrPhenotypicFeature denotes HCC MESH:D006528
11344 900-904 CellLine denotes Huh7 NCBITaxon:9606
11345 916-925 ChemicalEntity denotes sorafenib MESH:D000077157
11346 927-936 ChemicalEntity denotes Sorafenib MESH:D000077157
11347 965-969 GeneOrGeneProduct denotes MT1G NCBIGene:4495
11348 989-994 OrganismTaxon denotes human NCBITaxon:9606
11349 995-1001 DiseaseOrPhenotypicFeature denotes cancer MESH:D009369
11350 1137-1141 GeneOrGeneProduct denotes MT1G NCBIGene:4495
11351 1180-1189 ChemicalEntity denotes sorafenib MESH:D000077157
11352 1324-1328 GeneOrGeneProduct denotes NRF2 NCBIGene:4780
11353 1330-1373 GeneOrGeneProduct denotes Nuclear factor erythroid 2-Related Factor 2 NCBIGene:4780
11354 1458-1462 GeneOrGeneProduct denotes MT1G NCBIGene:4495
11355 1471-1477 DiseaseOrPhenotypicFeature denotes tumour MESH:D009369
11356 1510-1513 DiseaseOrPhenotypicFeature denotes HCC MESH:D006528
11357 1569-1572 GeneOrGeneProduct denotes MT1 NCBIGene:4495
11358 1603-1606 DiseaseOrPhenotypicFeature denotes HCC MESH:D006528
11359 1607-1615 OrganismTaxon denotes patients NCBITaxon:9606
11360 1626-1635 ChemicalEntity denotes sorafenib MESH:D000077157
11361 1734-1737 GeneOrGeneProduct denotes MT1 NCBIGene:4495
11362 1797-1806 ChemicalEntity denotes sorafenib MESH:D000077157
11363 1834-1840 DiseaseOrPhenotypicFeature denotes cancer MESH:D009369

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 64-88 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma 0007256
T2 79-88 DiseaseOrPhenotypicFeature denotes carcinoma 0004993
T3 281-287 DiseaseOrPhenotypicFeature denotes cancer 0004992
T4 392-398 DiseaseOrPhenotypicFeature denotes cancer 0004992
T5 611-617 DiseaseOrPhenotypicFeature denotes cancer 0004992
T6 677-701 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma 0007256
T7 692-701 DiseaseOrPhenotypicFeature denotes carcinoma 0004993
T8 995-1001 DiseaseOrPhenotypicFeature denotes cancer 0004992
T9 1834-1840 DiseaseOrPhenotypicFeature denotes cancer 0004992

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 0-17 GeneOrGeneProduct denotes Metallothionein-1
T2 89-94 GeneOrGeneProduct denotes cells
T3 142-158 GeneOrGeneProduct denotes kinase inhibitor
T4 159-165 GeneOrGeneProduct denotes active
T5 197-204 GeneOrGeneProduct denotes induces
T6 288-293 GeneOrGeneProduct denotes cells
T7 345-351 GeneOrGeneProduct denotes impact
T8 399-404 GeneOrGeneProduct denotes cells
T9 409-416 GeneOrGeneProduct denotes lacking
T10 418-425 GeneOrGeneProduct denotes METHODS
T11 464-473 GeneOrGeneProduct denotes real-time
T12 491-498 GeneOrGeneProduct denotes protein
T13 557-563 GeneOrGeneProduct denotes enzyme
T14 564-574 GeneOrGeneProduct denotes luciferase
T15 618-623 GeneOrGeneProduct denotes cells
T16 836-853 GeneOrGeneProduct denotes metallothionein-1
T17 855-858 GeneOrGeneProduct denotes MT1
T18 871-878 GeneOrGeneProduct denotes induced
T19 890-894 GeneOrGeneProduct denotes cell
T20 895-899 GeneOrGeneProduct denotes line
T21 900-904 GeneOrGeneProduct denotes Huh7
T22 965-969 GeneOrGeneProduct denotes MT1G
T23 970-974 GeneOrGeneProduct denotes mRNA
T24 1002-1007 GeneOrGeneProduct denotes cells
T25 1052-1057 GeneOrGeneProduct denotes other
T26 1078-1084 GeneOrGeneProduct denotes kinase
T27 1085-1095 GeneOrGeneProduct denotes inhibitors
T28 1137-1141 GeneOrGeneProduct denotes MT1G
T29 1164-1176 GeneOrGeneProduct denotes inducibility
T30 1199-1203 GeneOrGeneProduct denotes base
T31 1204-1208 GeneOrGeneProduct denotes pair
T32 1303-1323 GeneOrGeneProduct denotes transcription factor
T33 1324-1328 GeneOrGeneProduct denotes NRF2
T34 1330-1344 GeneOrGeneProduct denotes Nuclear factor
T35 1365-1371 GeneOrGeneProduct denotes Factor
T36 1418-1426 GeneOrGeneProduct denotes findings
T37 1444-1454 GeneOrGeneProduct denotes regulation
T38 1458-1462 GeneOrGeneProduct denotes MT1G
T39 1551-1558 GeneOrGeneProduct denotes protein
T40 1569-1572 GeneOrGeneProduct denotes MT1
T41 1667-1674 GeneOrGeneProduct denotes reduced
T42 1711-1719 GeneOrGeneProduct denotes findings
T43 1734-1737 GeneOrGeneProduct denotes MT1
T44 1787-1793 GeneOrGeneProduct denotes impact
T45 1841-1846 GeneOrGeneProduct denotes cells

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 0-17 GeneOrGeneProduct denotes Metallothionein-1
T2 142-158 GeneOrGeneProduct denotes kinase inhibitor
T3 345-351 GeneOrGeneProduct denotes impact
T4 464-473 GeneOrGeneProduct denotes real-time
T5 491-498 GeneOrGeneProduct denotes protein
T6 557-563 GeneOrGeneProduct denotes enzyme
T7 564-574 GeneOrGeneProduct denotes luciferase
T8 836-853 GeneOrGeneProduct denotes metallothionein-1
T9 855-858 GeneOrGeneProduct denotes MT1
T10 890-894 GeneOrGeneProduct denotes cell
T11 900-904 GeneOrGeneProduct denotes Huh7
T12 965-969 GeneOrGeneProduct denotes MT1G
T13 970-974 GeneOrGeneProduct denotes mRNA
T14 1052-1057 GeneOrGeneProduct denotes other
T15 1078-1084 GeneOrGeneProduct denotes kinase
T16 1085-1095 GeneOrGeneProduct denotes inhibitors
T17 1137-1141 GeneOrGeneProduct denotes MT1G
T18 1303-1323 GeneOrGeneProduct denotes transcription factor
T19 1324-1328 GeneOrGeneProduct denotes NRF2
T20 1330-1344 GeneOrGeneProduct denotes Nuclear factor
T21 1365-1371 GeneOrGeneProduct denotes Factor
T22 1458-1462 GeneOrGeneProduct denotes MT1G
T23 1551-1558 GeneOrGeneProduct denotes protein
T24 1569-1572 GeneOrGeneProduct denotes MT1
T25 1667-1674 GeneOrGeneProduct denotes reduced
T26 1734-1737 GeneOrGeneProduct denotes MT1
T27 1787-1793 GeneOrGeneProduct denotes impact

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 64-88 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma D006528
T2 188-195 DiseaseOrPhenotypicFeature denotes tumours DISEASE
T3 263-271 DiseaseOrPhenotypicFeature denotes necrosis D009336
T4 281-287 DiseaseOrPhenotypicFeature denotes cancer D009369
T5 392-398 DiseaseOrPhenotypicFeature denotes cancer D009369
T6 611-617 DiseaseOrPhenotypicFeature denotes cancer D009369
T7 638-644 DiseaseOrPhenotypicFeature denotes Tumour DISEASE
T8 677-701 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma D006528
T9 703-706 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T11 748-751 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T13 886-889 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T15 995-1001 DiseaseOrPhenotypicFeature denotes cancer D009369
T16 1471-1477 DiseaseOrPhenotypicFeature denotes tumour DISEASE
T17 1510-1513 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T19 1603-1606 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T21 1834-1840 DiseaseOrPhenotypicFeature denotes cancer D009369

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 0-17 GeneOrGeneProduct denotes Metallothionein-1
T2 142-158 GeneOrGeneProduct denotes kinase inhibitor
T3 836-853 GeneOrGeneProduct denotes metallothionein-1
T4 855-858 GeneOrGeneProduct denotes MT1
T5 900-904 GeneOrGeneProduct denotes Huh7
T6 965-969 GeneOrGeneProduct denotes MT1G
T7 1078-1095 GeneOrGeneProduct denotes kinase inhibitors
T8 1137-1141 GeneOrGeneProduct denotes MT1G
T9 1324-1328 GeneOrGeneProduct denotes NRF2
T10 1330-1344 GeneOrGeneProduct denotes Nuclear factor
T11 1458-1462 GeneOrGeneProduct denotes MT1G
T12 1569-1572 GeneOrGeneProduct denotes MT1
T13 1734-1737 GeneOrGeneProduct denotes MT1

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 64-88 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma 0007256
T2 677-701 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma 0007256
T3 703-706 DiseaseOrPhenotypicFeature denotes HCC 0007256
T4 748-751 DiseaseOrPhenotypicFeature denotes HCC 0007256
T5 886-889 DiseaseOrPhenotypicFeature denotes HCC 0007256
T6 1510-1513 DiseaseOrPhenotypicFeature denotes HCC 0007256
T7 1603-1606 DiseaseOrPhenotypicFeature denotes HCC 0007256

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 64-88 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma D006528
T2 188-195 DiseaseOrPhenotypicFeature denotes tumours DISEASE
T3 263-271 DiseaseOrPhenotypicFeature denotes necrosis D009336
T4 281-287 DiseaseOrPhenotypicFeature denotes cancer D009369
T5 392-398 DiseaseOrPhenotypicFeature denotes cancer D009369
T6 611-617 DiseaseOrPhenotypicFeature denotes cancer D009369
T7 638-644 DiseaseOrPhenotypicFeature denotes Tumour DISEASE
T8 677-701 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma D006528
T9 703-706 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T11 748-751 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T13 886-889 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T15 995-1001 DiseaseOrPhenotypicFeature denotes cancer D009369
T16 1471-1477 DiseaseOrPhenotypicFeature denotes tumour DISEASE
T17 1510-1513 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T19 1603-1606 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T21 1834-1840 DiseaseOrPhenotypicFeature denotes cancer D009369

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 64-88 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma D006528
T2 188-195 DiseaseOrPhenotypicFeature denotes tumours DISEASE
T3 281-287 DiseaseOrPhenotypicFeature denotes cancer D009369
T4 392-398 DiseaseOrPhenotypicFeature denotes cancer D009369
T5 611-617 DiseaseOrPhenotypicFeature denotes cancer D009369
T6 638-644 DiseaseOrPhenotypicFeature denotes Tumour DISEASE
T7 677-701 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma D006528
T8 703-706 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T10 748-751 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T12 886-889 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T14 995-1001 DiseaseOrPhenotypicFeature denotes cancer D009369
T15 1471-1477 DiseaseOrPhenotypicFeature denotes tumour DISEASE
T16 1510-1513 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T18 1603-1606 DiseaseOrPhenotypicFeature denotes HCC DISEASE|D006528
T20 1834-1840 DiseaseOrPhenotypicFeature denotes cancer D009369

LitCoin_CellLine

Id Subject Object Predicate Lexical cue cellosaurus_accession_id
T1 900-904 CellLine denotes Huh7 CVCL_0336

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 752-760 OrganismTaxon denotes patients
T2 989-994 OrganismTaxon denotes human
T3 1345-1354 OrganismTaxon denotes erythroid
T4 1607-1615 OrganismTaxon denotes patients

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 0-15 ChemicalEntity denotes Metallothionein ChemicalEntity
T2 106-115 ChemicalEntity denotes sorafenib D000077157|http://purl.obolibrary.org/obo/CHEBI_50924
T4 129-138 ChemicalEntity denotes Sorafenib D000077157|http://purl.obolibrary.org/obo/CHEBI_50924
T6 355-364 ChemicalEntity denotes sorafenib D000077157|http://purl.obolibrary.org/obo/CHEBI_50924
T8 627-636 ChemicalEntity denotes sorafenib D000077157|http://purl.obolibrary.org/obo/CHEBI_50924
T10 771-780 ChemicalEntity denotes sorafenib D000077157|http://purl.obolibrary.org/obo/CHEBI_50924
T12 836-851 ChemicalEntity denotes metallothionein ChemicalEntity
T13 916-925 ChemicalEntity denotes sorafenib D000077157|http://purl.obolibrary.org/obo/CHEBI_50924
T15 927-936 ChemicalEntity denotes Sorafenib D000077157|http://purl.obolibrary.org/obo/CHEBI_50924
T17 1180-1189 ChemicalEntity denotes sorafenib D000077157|http://purl.obolibrary.org/obo/CHEBI_50924
T19 1230-1242 ChemicalEntity denotes Anti-oxidant ChemicalEntity
T20 1626-1635 ChemicalEntity denotes sorafenib D000077157|http://purl.obolibrary.org/obo/CHEBI_50924
T22 1797-1806 ChemicalEntity denotes sorafenib D000077157|http://purl.obolibrary.org/obo/CHEBI_50924

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID: cellosaurus_accession_id
T1 900-904 CellLine denotes Huh7 CVCL_0336
T22 1797-1806 ChemicalEntity denotes sorafenib http://purl.obolibrary.org/obo/CHEBI_50924|D000077157
T20 1626-1635 ChemicalEntity denotes sorafenib http://purl.obolibrary.org/obo/CHEBI_50924|D000077157
T19 1230-1242 ChemicalEntity denotes Anti-oxidant ChemicalEntity
T17 1180-1189 ChemicalEntity denotes sorafenib http://purl.obolibrary.org/obo/CHEBI_50924|D000077157
T15 927-936 ChemicalEntity denotes Sorafenib http://purl.obolibrary.org/obo/CHEBI_50924|D000077157
T13 916-925 ChemicalEntity denotes sorafenib http://purl.obolibrary.org/obo/CHEBI_50924|D000077157
T12 836-851 ChemicalEntity denotes metallothionein ChemicalEntity
T10 771-780 ChemicalEntity denotes sorafenib http://purl.obolibrary.org/obo/CHEBI_50924|D000077157
T8 627-636 ChemicalEntity denotes sorafenib http://purl.obolibrary.org/obo/CHEBI_50924|D000077157
T6 355-364 ChemicalEntity denotes sorafenib http://purl.obolibrary.org/obo/CHEBI_50924|D000077157
T4 129-138 ChemicalEntity denotes Sorafenib http://purl.obolibrary.org/obo/CHEBI_50924|D000077157
T2 106-115 ChemicalEntity denotes sorafenib http://purl.obolibrary.org/obo/CHEBI_50924|D000077157
T91597 0-15 ChemicalEntity denotes Metallothionein ChemicalEntity
T33532 1734-1737 GeneOrGeneProduct denotes MT1
T66692 1569-1572 GeneOrGeneProduct denotes MT1
T11 1458-1462 GeneOrGeneProduct denotes MT1G
T11649 1330-1344 GeneOrGeneProduct denotes Nuclear factor
T9 1324-1328 GeneOrGeneProduct denotes NRF2
T61570 1137-1141 GeneOrGeneProduct denotes MT1G
T7 1078-1095 GeneOrGeneProduct denotes kinase inhibitors
T71714 965-969 GeneOrGeneProduct denotes MT1G
T5 900-904 GeneOrGeneProduct denotes Huh7
T14010 855-858 GeneOrGeneProduct denotes MT1
T3 836-853 GeneOrGeneProduct denotes metallothionein-1
T54816 142-158 GeneOrGeneProduct denotes kinase inhibitor
T81538 0-17 GeneOrGeneProduct denotes Metallothionein-1
T98655 1834-1840 DiseaseOrPhenotypicFeature denotes cancer D009369
T18 1603-1606 DiseaseOrPhenotypicFeature denotes HCC D006528|DISEASE
T16 1510-1513 DiseaseOrPhenotypicFeature denotes HCC D006528|DISEASE
T9866 1471-1477 DiseaseOrPhenotypicFeature denotes tumour DISEASE
T14 995-1001 DiseaseOrPhenotypicFeature denotes cancer D009369
T78776 886-889 DiseaseOrPhenotypicFeature denotes HCC D006528|DISEASE
T55000 748-751 DiseaseOrPhenotypicFeature denotes HCC D006528|DISEASE
T87883 703-706 DiseaseOrPhenotypicFeature denotes HCC D006528|DISEASE
T93319 677-701 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma D006528
T617 638-644 DiseaseOrPhenotypicFeature denotes Tumour DISEASE
T3023 611-617 DiseaseOrPhenotypicFeature denotes cancer D009369
T50206 392-398 DiseaseOrPhenotypicFeature denotes cancer D009369
T39241 281-287 DiseaseOrPhenotypicFeature denotes cancer D009369
T22881 188-195 DiseaseOrPhenotypicFeature denotes tumours DISEASE
T28839 64-88 DiseaseOrPhenotypicFeature denotes hepatocellular carcinoma D006528
T40254 1607-1615 OrganismTaxon denotes patients
T33957 1345-1354 OrganismTaxon denotes erythroid
T75696 989-994 OrganismTaxon denotes human
T55587 752-760 OrganismTaxon denotes patients