PubMed:27173828
Annnotations
GoldHamster
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-31 | P02301 | denotes | Embryonic |
| T2 | 22-31 | PR:000029532 | denotes | Embryonic |
| T3 | 71-81 | UBERON:0002532 | denotes | Blastocyst |
| T4 | 71-81 | UBERON:0000358 | denotes | Blastocyst |
| T5 | 120-129 | P02301 | denotes | embryonic |
| T6 | 120-129 | PR:000029532 | denotes | embryonic |
| T8 | 151-154 | PR:Q8LLD0 | denotes | pre |
| T10 | 151-154 | UBERON:0001782 | denotes | pre |
| T9 | 151-154 | SO:0002045 | denotes | pre |
| T7 | 151-154 | GO:0003904 | denotes | pre |
| T11 | 254-263 | P02301 | denotes | embryonic |
| T12 | 254-263 | PR:000029532 | denotes | embryonic |
| T13 | 313-328 | UBERON:0000087 | denotes | inner cell mass |
| T14 | 330-333 | UBERON:2000033 | denotes | ICM |
| T15 | 330-333 | UBERON:0000087 | denotes | ICM |
| T16 | 366-376 | UBERON:0002532 | denotes | blastocyst |
| T17 | 366-376 | UBERON:0000358 | denotes | blastocyst |
| T19 | 393-423 | P48798 | denotes | basic fibroblast growth factor |
| T20 | 393-423 | Q60487 | denotes | basic fibroblast growth factor |
| T22 | 393-423 | P15655 | denotes | basic fibroblast growth factor |
| T23 | 393-423 | P03969 | denotes | basic fibroblast growth factor |
| T24 | 393-423 | P13109 | denotes | basic fibroblast growth factor |
| T25 | 393-423 | Q5IS69 | denotes | basic fibroblast growth factor |
| T26 | 393-423 | P48800 | denotes | basic fibroblast growth factor |
| T27 | 393-423 | P12226 | denotes | basic fibroblast growth factor |
| T28 | 393-423 | P09038 | denotes | basic fibroblast growth factor |
| T29 | 393-423 | P48799 | denotes | basic fibroblast growth factor |
| T30 | 393-423 | PR:000007489 | denotes | basic fibroblast growth factor |
| T31 | 393-423 | P20003 | denotes | basic fibroblast growth factor |
| T18 | 393-423 | D016222 | denotes | basic fibroblast growth factor |
| T21 | 393-423 | D016222 | denotes | basic fibroblast growth factor |
| T32 | 399-409 | CL:0000057 | denotes | fibroblast |
| T34 | 399-423 | GO:0005104 | denotes | fibroblast growth factor |
| T41 | 425-429 | P48798 | denotes | bFGF |
| T42 | 425-429 | Q60487 | denotes | bFGF |
| T43 | 425-429 | P15655 | denotes | bFGF |
| T44 | 425-429 | P03969 | denotes | bFGF |
| T45 | 425-429 | P13109 | denotes | bFGF |
| T46 | 425-429 | Q5IS69 | denotes | bFGF |
| T47 | 425-429 | P48800 | denotes | bFGF |
| T48 | 425-429 | P12226 | denotes | bFGF |
| T49 | 425-429 | P09038 | denotes | bFGF |
| T50 | 425-429 | P48799 | denotes | bFGF |
| T51 | 425-429 | PR:000007489 | denotes | bFGF |
| T52 | 425-429 | P20003 | denotes | bFGF |
| T53 | 524-532 | PR:P48775 | denotes | to human |
| T54 | 527-532 | D006801 | denotes | human |
| T55 | 533-542 | P02301 | denotes | embryonic |
| T56 | 533-542 | PR:000029532 | denotes | embryonic |
| T57 | 555-558 | D017681 | denotes | hES |
| T58 | 570-576 | D012377 | denotes | rodent |
| T59 | 577-585 | UBERON:0002532 | denotes | epiblast |
| T60 | 620-640 | P19147 | denotes | alkaline phosphatase |
| T61 | 620-640 | P83456 | denotes | alkaline phosphatase |
| T63 | 620-640 | PR:000023540 | denotes | alkaline phosphatase |
| T64 | 620-640 | O60109 | denotes | alkaline phosphatase |
| T65 | 620-640 | P21948 | denotes | alkaline phosphatase |
| T66 | 620-640 | P00634 | denotes | alkaline phosphatase |
| T67 | 620-640 | P86348 | denotes | alkaline phosphatase |
| T68 | 620-640 | P81800 | denotes | alkaline phosphatase |
| T69 | 620-640 | Q05205 | denotes | alkaline phosphatase |
| T62 | 620-640 | D000469 | denotes | alkaline phosphatase |
| T70 | 629-640 | GO:0016791 | denotes | phosphatase |
| T74 | 698-702 | P20263 | denotes | OCT4 |
| T75 | 698-702 | Q5TM49 | denotes | OCT4 |
| T76 | 698-702 | Q9TSV5 | denotes | OCT4 |
| T77 | 698-702 | PR:P20263 | denotes | OCT4 |
| T78 | 698-702 | PR:Q01860 | denotes | OCT4 |
| T79 | 698-702 | PR:Q9LHQ6 | denotes | OCT4 |
| T80 | 698-702 | Q01860 | denotes | OCT4 |
| T81 | 698-702 | PR:000013044 | denotes | OCT4 |
| T82 | 704-709 | PR:A7Y7W3 | denotes | NANOG |
| T83 | 704-709 | PR:Q80Z64 | denotes | NANOG |
| T84 | 704-709 | PR:000010968 | denotes | NANOG |
| T85 | 704-709 | PR:Q9H9S0 | denotes | NANOG |
| T97 | 711-715 | Q6IUU3 | denotes | SOX2 |
| T98 | 711-715 | PR:P48432 | denotes | SOX2 |
| T99 | 711-715 | PR:P48431 | denotes | SOX2 |
| T100 | 711-715 | PR:Q6P0E1 | denotes | SOX2 |
| T101 | 711-715 | PR:000015426 | denotes | SOX2 |
| T102 | 711-715 | PR:Q21305 | denotes | SOX2 |
| T103 | 711-715 | PR:P48430 | denotes | SOX2 |
| T104 | 711-715 | PR:Q6IUU3 | denotes | SOX2 |
| T105 | 717-721 | PR:P31142 | denotes | SSEA |
| T106 | 717-721 | PR:000033007 | denotes | SSEA |
| T107 | 717-723 | C066584 | denotes | SSEA-4 |
| T108 | 717-723 | C066584 | denotes | SSEA-4 |
| T111 | 725-730 | PR:Q54T85 | denotes | TRA-1 |
| T112 | 725-730 | Q9NRQ2 | denotes | TRA-1 |
| T113 | 725-730 | PR:P41148 | denotes | TRA-1 |
| T114 | 725-730 | PR:Q66HD0 | denotes | TRA-1 |
| T115 | 725-730 | PR:Q29092 | denotes | TRA-1 |
| T116 | 725-730 | PR:P38811 | denotes | TRA-1 |
| T117 | 725-730 | PR:Q8I8U7 | denotes | TRA-1 |
| T118 | 725-730 | PR:P14625 | denotes | TRA-1 |
| T119 | 725-730 | PR:000012884 | denotes | TRA-1 |
| T120 | 725-730 | PR:P34708 | denotes | TRA-1 |
| T121 | 725-730 | PR:Q9HFE8 | denotes | TRA-1 |
| T122 | 725-730 | Q9JJ00 | denotes | TRA-1 |
| T123 | 725-730 | PR:Q98867 | denotes | TRA-1 |
| T124 | 725-730 | PR:P08113 | denotes | TRA-1 |
| T125 | 725-730 | PR:000012887 | denotes | TRA-1 |
| T126 | 725-730 | PR:000008801 | denotes | TRA-1 |
| T127 | 725-730 | PR:P08110 | denotes | TRA-1 |
| T130 | 739-744 | PR:Q54T85 | denotes | TRA-1 |
| T131 | 739-744 | Q9NRQ2 | denotes | TRA-1 |
| T132 | 739-744 | PR:P41148 | denotes | TRA-1 |
| T133 | 739-744 | PR:Q66HD0 | denotes | TRA-1 |
| T134 | 739-744 | PR:Q29092 | denotes | TRA-1 |
| T135 | 739-744 | PR:P38811 | denotes | TRA-1 |
| T136 | 739-744 | PR:Q8I8U7 | denotes | TRA-1 |
| T137 | 739-744 | PR:P14625 | denotes | TRA-1 |
| T138 | 739-744 | PR:000012884 | denotes | TRA-1 |
| T139 | 739-744 | PR:P34708 | denotes | TRA-1 |
| T140 | 739-744 | PR:Q9HFE8 | denotes | TRA-1 |
| T141 | 739-744 | Q9JJ00 | denotes | TRA-1 |
| T142 | 739-744 | PR:Q98867 | denotes | TRA-1 |
| T143 | 739-744 | PR:P08113 | denotes | TRA-1 |
| T144 | 739-744 | PR:000012887 | denotes | TRA-1 |
| T145 | 739-744 | PR:000008801 | denotes | TRA-1 |
| T146 | 739-744 | PR:P08110 | denotes | TRA-1 |
| T147 | 796-799 | Q41249 | denotes | PCR |
| T148 | 796-799 | O66148 | denotes | PCR |
| T149 | 796-799 | Q59987 | denotes | PCR |
| T150 | 796-799 | Q01289 | denotes | PCR |
| T151 | 796-799 | O80333 | denotes | PCR |
| T152 | 796-799 | P15904 | denotes | PCR |
| T153 | 796-799 | Q9SDT1 | denotes | PCR |
| T154 | 796-799 | Q39617 | denotes | PCR |
| T155 | 834-847 | UBERON:0014374 | denotes | embryoid body |
| T156 | 854-863 | D013724 | denotes | teratomas |
| T157 | 854-863 | D013724 | denotes | teratomas |
| T158 | 1000-1005 | PR:Q9WTQ2 | denotes | PODXL |
| T159 | 1000-1005 | PR:Q9R0M4 | denotes | PODXL |
| T160 | 1000-1005 | PR:O00592 | denotes | PODXL |
| T161 | 1000-1005 | PR:000012955 | denotes | PODXL |
| T162 | 1000-1005 | PR:O57604 | denotes | PODXL |
| T163 | 1007-1010 | CVCL_B501 | denotes | REX |
| T164 | 1007-1011 | P0C205 | denotes | REX1 |
| T165 | 1007-1011 | PR:000017644 | denotes | REX1 |
| T166 | 1007-1011 | PR:Q96MM3 | denotes | REX1 |
| T167 | 1007-1011 | P0C206 | denotes | REX1 |
| T168 | 1007-1011 | PR:P53331 | denotes | REX1 |
| T169 | 1007-1011 | Q96MM3 | denotes | REX1 |
| T170 | 1007-1011 | P0C207 | denotes | REX1 |
| T171 | 1007-1011 | PR:P22227 | denotes | REX1 |
| T172 | 1007-1011 | P0C208 | denotes | REX1 |
| T173 | 1007-1011 | P22227 | denotes | REX1 |
| T185 | 1013-1017 | Q6IUU3 | denotes | SOX2 |
| T186 | 1013-1017 | PR:P48432 | denotes | SOX2 |
| T187 | 1013-1017 | PR:P48431 | denotes | SOX2 |
| T188 | 1013-1017 | PR:Q6P0E1 | denotes | SOX2 |
| T189 | 1013-1017 | PR:000015426 | denotes | SOX2 |
| T190 | 1013-1017 | PR:Q21305 | denotes | SOX2 |
| T191 | 1013-1017 | PR:P48430 | denotes | SOX2 |
| T192 | 1013-1017 | PR:Q6IUU3 | denotes | SOX2 |
| T193 | 1019-1023 | PR:Q13887 | denotes | KLF5 |
| T194 | 1019-1023 | PR:000009365 | denotes | KLF5 |
| T195 | 1019-1023 | PR:Q9Z0Z7 | denotes | KLF5 |
| T198 | 1028-1031 | CVCL_6694 | denotes | NR6 |
| T199 | 1028-1033 | PR:Q64249 | denotes | NR6A1 |
| T200 | 1028-1033 | PR:Q15406 | denotes | NR6A1 |
| T201 | 1028-1033 | PR:000011413 | denotes | NR6A1 |
| T204 | 1082-1091 | P02301 | denotes | embryonic |
| T205 | 1082-1091 | PR:000029532 | denotes | embryonic |
| T206 | 1105-1108 | CHEBI:55310 | denotes | PEF |
| T209 | 1129-1133 | P20263 | denotes | OCT4 |
| T210 | 1129-1133 | Q5TM49 | denotes | OCT4 |
| T211 | 1129-1133 | Q9TSV5 | denotes | OCT4 |
| T212 | 1129-1133 | PR:P20263 | denotes | OCT4 |
| T213 | 1129-1133 | PR:Q01860 | denotes | OCT4 |
| T214 | 1129-1133 | PR:Q9LHQ6 | denotes | OCT4 |
| T215 | 1129-1133 | Q01860 | denotes | OCT4 |
| T216 | 1129-1133 | PR:000013044 | denotes | OCT4 |
| T217 | 1135-1139 | PR:P70324 | denotes | TBX3 |
| T218 | 1135-1139 | PR:000016151 | denotes | TBX3 |
| T219 | 1135-1139 | PR:Q7TST9 | denotes | TBX3 |
| T220 | 1135-1139 | PR:O15119 | denotes | TBX3 |
| T221 | 1141-1144 | CVCL_B501 | denotes | REX |
| T222 | 1141-1145 | P0C205 | denotes | REX1 |
| T223 | 1141-1145 | PR:000017644 | denotes | REX1 |
| T224 | 1141-1145 | PR:Q96MM3 | denotes | REX1 |
| T225 | 1141-1145 | P0C206 | denotes | REX1 |
| T226 | 1141-1145 | PR:P53331 | denotes | REX1 |
| T227 | 1141-1145 | Q96MM3 | denotes | REX1 |
| T228 | 1141-1145 | P0C207 | denotes | REX1 |
| T229 | 1141-1145 | PR:P22227 | denotes | REX1 |
| T230 | 1141-1145 | P0C208 | denotes | REX1 |
| T231 | 1141-1145 | P22227 | denotes | REX1 |
| T232 | 1147-1150 | CHEBI:32386 | denotes | LIN |
| T241 | 1147-1153 | Q5EB47 | denotes | LIN28A |
| T242 | 1147-1153 | Q45KJ5 | denotes | LIN28A |
| T243 | 1147-1153 | Q8JHC4 | denotes | LIN28A |
| T244 | 1147-1153 | PR:Q45KJ5 | denotes | LIN28A |
| T245 | 1147-1153 | Q8K3Y3 | denotes | LIN28A |
| T246 | 1147-1153 | PR:Q8K3Y3 | denotes | LIN28A |
| T247 | 1147-1153 | Q9H9Z2 | denotes | LIN28A |
| T248 | 1147-1153 | PR:000009820 | denotes | LIN28A |
| T249 | 1147-1153 | PR:Q9H9Z2 | denotes | LIN28A |
| T250 | 1147-1153 | Q803L0 | denotes | LIN28A |
| T251 | 1147-1153 | PR:Q803L0 | denotes | LIN28A |
| T254 | 1158-1163 | PR:Q9CQS7 | denotes | DPPA5 |
| T255 | 1158-1163 | PR:000006847 | denotes | DPPA5 |
| T256 | 1158-1163 | PR:000006668 | denotes | DPPA5 |
| T257 | 1158-1163 | PR:A6NC42 | denotes | DPPA5 |
| T258 | 1212-1215 | UBERON:2000033 | denotes | ICM |
| T259 | 1212-1215 | UBERON:0000087 | denotes | ICM |
| T260 | 1219-1229 | UBERON:0002532 | denotes | blastocyst |
| T261 | 1219-1229 | UBERON:0000358 | denotes | blastocyst |
| T262 | 1263-1272 | P02301 | denotes | embryonic |
| T263 | 1263-1272 | PR:000029532 | denotes | embryonic |
| T264 | 1331-1341 | UBERON:0002532 | denotes | blastocyst |
| T265 | 1331-1341 | UBERON:0000358 | denotes | blastocyst |
Goldhamster2_Cellosaurus
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 184-187 | CVCL_6758|Undefined_cell_line_type|Cricetulus griseus | denotes | has |
| T2 | 184-187 | CVCL_E689|Transformed_cell_line|Homo sapiens | denotes | has |
| T3 | 197-198 | CVCL_6479|Finite_cell_line|Mus musculus | denotes | a |
| T4 | 216-218 | CVCL_5M23|Cancer_cell_line|Mesocricetus auratus | denotes | we |
| T5 | 642-644 | CVCL_E457|Transformed_cell_line|Homo sapiens | denotes | AP |
| T6 | 646-654 | CVCL_C410|Hybridoma|Mus musculus | denotes | activity |
| T7 | 731-733 | CVCL_C917|Induced_pluripotent_stem_cell|Homo sapiens | denotes | 60 |
| T8 | 849-851 | CVCL_WY97|Cancer_cell_line|Homo sapiens | denotes | EB |
PubMed_ArguminSci
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 97-209 | DRI_Background | denotes | Efficient isolation of embryonic stem (ES) cells from pre-implantation porcine embryos has remained a challenge. |
| T2 | 210-431 | DRI_Approach | denotes | Here, we describe the derivation of porcine embryonic stem-like cells (pESLCs) by seeding the isolated inner cell mass (ICM) from in vitro-produced porcine blastocyst into α-MEM with basic fibroblast growth factor (bFGF). |
| T3 | 432-597 | DRI_Approach | denotes | The pESL cells kept the normal karyotype and displayed flatten clones, similar in phenotype to human embryonic stem cells (hES cells) and rodent epiblast stem cells. |
| T4 | 598-800 | DRI_Background | denotes | These cells exhibited alkaline phosphatase (AP) activity and expressed pluripotency markers such as OCT4, NANOG, SOX2, SSEA-4, TRA-1-60, and TRA-1-81 as determined by both immunofluorescence and RT-PCR. |
| T5 | 801-928 | DRI_Background | denotes | Additionally, these cells formed embryoid body (EB), teratomas and also differentiated into 3 germ layers in vitro and in vivo. |
| T6 | 929-1230 | DRI_Outcome | denotes | Microarray analysis showed the expression of the pluripotency markers, PODXL, REX1, SOX2, KLF5 and NR6A1, was significantly higher compared with porcine embryonic fibroblasts (PEF), but expression of OCT4, TBX3, REX1, LIN28A and DPPA5, was lower compared to the whole blastocysts or ICM of blastocyst. |
| T7 | 1231-1315 | DRI_Outcome | denotes | Our results showed that porcine embryonic stem-like cells can be established from in |
| T8 | 1348-1412 | DRI_Outcome | denotes | embryos, which promote porcine naive ES cells to be established. |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 717-723 | Glycan | denotes | SSEA-4 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G84263XI |
mondo_disease
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 854-863 | Disease | denotes | teratomas | http://purl.obolibrary.org/obo/MONDO_0002601|http://purl.obolibrary.org/obo/MONDO_0003516 |
Anatomy-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 32-36 | Body_part | denotes | Stem | http://purl.obolibrary.org/obo/MAT_0000239 |
| T2 | 71-81 | Body_part | denotes | Blastocyst | http://purl.obolibrary.org/obo/MAT_0000067|http://purl.obolibrary.org/obo/MAT_0000396 |
| T4 | 88-95 | Body_part | denotes | Embryos | http://purl.obolibrary.org/obo/MAT_0000226 |
| T5 | 130-134 | Body_part | denotes | stem | http://purl.obolibrary.org/obo/MAT_0000239 |
| T6 | 176-183 | Body_part | denotes | embryos | http://purl.obolibrary.org/obo/MAT_0000226 |
| T7 | 264-268 | Body_part | denotes | stem | http://purl.obolibrary.org/obo/MAT_0000239 |
| T8 | 313-328 | Body_part | denotes | inner cell mass | http://purl.obolibrary.org/obo/MAT_0000250 |
| T9 | 330-333 | Body_part | denotes | ICM | http://purl.obolibrary.org/obo/MAT_0000250 |
| T10 | 366-376 | Body_part | denotes | blastocyst | http://purl.obolibrary.org/obo/MAT_0000067|http://purl.obolibrary.org/obo/MAT_0000396 |
| T12 | 543-553 | Body_part | denotes | stem cells | http://purl.obolibrary.org/obo/MAT_0000185 |
| T13 | 577-585 | Body_part | denotes | epiblast | http://purl.obolibrary.org/obo/MAT_0000067 |
| T14 | 586-596 | Body_part | denotes | stem cells | http://purl.obolibrary.org/obo/MAT_0000185 |
| T15 | 1197-1208 | Body_part | denotes | blastocysts | http://purl.obolibrary.org/obo/MAT_0000067|http://purl.obolibrary.org/obo/MAT_0000396 |
| T17 | 1212-1215 | Body_part | denotes | ICM | http://purl.obolibrary.org/obo/MAT_0000250 |
| T18 | 1219-1229 | Body_part | denotes | blastocyst | http://purl.obolibrary.org/obo/MAT_0000067|http://purl.obolibrary.org/obo/MAT_0000396 |
| T20 | 1273-1277 | Body_part | denotes | stem | http://purl.obolibrary.org/obo/MAT_0000239 |
| T21 | 1331-1341 | Body_part | denotes | blastocyst | http://purl.obolibrary.org/obo/MAT_0000067|http://purl.obolibrary.org/obo/MAT_0000396 |
| T23 | 1348-1355 | Body_part | denotes | embryos | http://purl.obolibrary.org/obo/MAT_0000226 |
Glycan-GlyCosmos
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 717-723 | Glycan | denotes | SSEA-4 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G84263XI |
GlyCosmos-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 717-723 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | SSEA-4 | http://www.glycoepitope.jp/epitopes/EP0044 |
| T2 | 725-733 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | TRA-1-60 | http://www.glycoepitope.jp/epitopes/AN0727 |
| T3 | 739-747 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | TRA-1-81 | http://www.glycoepitope.jp/epitopes/AN0728 |
GlyCosmos15-CL
| Id | Subject | Object | Predicate | Lexical cue | cl_id |
|---|---|---|---|---|---|
| T1 | 399-409 | Cell | denotes | fibroblast | http://purl.obolibrary.org/obo/CL:0000057 |
| T2 | 533-553 | Cell | denotes | embryonic stem cells | http://purl.obolibrary.org/obo/CL:0002322 |
| T3 | 586-596 | Cell | denotes | stem cells | http://purl.obolibrary.org/obo/CL:0000034 |
| T4 | 1082-1103 | Cell | denotes | embryonic fibroblasts | http://purl.obolibrary.org/obo/CL:2000042 |
GlyCosmos15-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 71-81 | Body_part | denotes | Blastocyst | http://purl.obolibrary.org/obo/UBERON_0000358|http://purl.obolibrary.org/obo/UBERON_0002532 |
| T3 | 313-328 | Body_part | denotes | inner cell mass | http://purl.obolibrary.org/obo/UBERON_0000087 |
| T4 | 330-333 | Body_part | denotes | ICM | http://purl.obolibrary.org/obo/UBERON_0000087 |
| T5 | 366-376 | Body_part | denotes | blastocyst | http://purl.obolibrary.org/obo/UBERON_0000358|http://purl.obolibrary.org/obo/UBERON_0002532 |
| T7 | 399-409 | Body_part | denotes | fibroblast | http://purl.obolibrary.org/obo/CL_0000057 |
| T8 | 543-553 | Body_part | denotes | stem cells | http://purl.obolibrary.org/obo/CL_0000034 |
| T9 | 577-585 | Body_part | denotes | epiblast | http://purl.obolibrary.org/obo/UBERON_0002532 |
| T10 | 586-596 | Body_part | denotes | stem cells | http://purl.obolibrary.org/obo/CL_0000034 |
| T11 | 834-847 | Body_part | denotes | embryoid body | http://purl.obolibrary.org/obo/UBERON_0014374 |
| T12 | 849-851 | Body_part | denotes | EB | http://purl.obolibrary.org/obo/UBERON_0014374 |
| T13 | 895-906 | Body_part | denotes | germ layers | http://purl.obolibrary.org/obo/UBERON_0000923 |
| T14 | 1082-1103 | Body_part | denotes | embryonic fibroblasts | http://purl.obolibrary.org/obo/CL_2000042 |
| T15 | 1197-1208 | Body_part | denotes | blastocysts | http://purl.obolibrary.org/obo/UBERON_0000358|http://purl.obolibrary.org/obo/UBERON_0002532 |
| T17 | 1212-1215 | Body_part | denotes | ICM | http://purl.obolibrary.org/obo/UBERON_0000087 |
| T18 | 1219-1229 | Body_part | denotes | blastocyst | http://purl.obolibrary.org/obo/UBERON_0000358|http://purl.obolibrary.org/obo/UBERON_0002532 |
| T20 | 1331-1341 | Body_part | denotes | blastocyst | http://purl.obolibrary.org/obo/UBERON_0000358|http://purl.obolibrary.org/obo/UBERON_0002532 |
GlyCosmos15-Taxon
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 527-532 | Organism | denotes | human | 9606 |
GlyCosmos15-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 717-723 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | SSEA-4 | http://www.glycoepitope.jp/epitopes/EP0044 |
| T2 | 725-733 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | TRA-1-60 | http://www.glycoepitope.jp/epitopes/AN0727 |
| T3 | 739-747 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | TRA-1-81 | http://www.glycoepitope.jp/epitopes/AN0728 |
GlyCosmos15-Sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-96 | Sentence | denotes | Derivation of Porcine Embryonic Stem-Like Cells from In Vitro-Produced Blastocyst-Stage Embryos. |
| T2 | 97-209 | Sentence | denotes | Efficient isolation of embryonic stem (ES) cells from pre-implantation porcine embryos has remained a challenge. |
| T3 | 210-431 | Sentence | denotes | Here, we describe the derivation of porcine embryonic stem-like cells (pESLCs) by seeding the isolated inner cell mass (ICM) from in vitro-produced porcine blastocyst into α-MEM with basic fibroblast growth factor (bFGF). |
| T4 | 432-597 | Sentence | denotes | The pESL cells kept the normal karyotype and displayed flatten clones, similar in phenotype to human embryonic stem cells (hES cells) and rodent epiblast stem cells. |
| T5 | 598-800 | Sentence | denotes | These cells exhibited alkaline phosphatase (AP) activity and expressed pluripotency markers such as OCT4, NANOG, SOX2, SSEA-4, TRA-1-60, and TRA-1-81 as determined by both immunofluorescence and RT-PCR. |
| T6 | 801-928 | Sentence | denotes | Additionally, these cells formed embryoid body (EB), teratomas and also differentiated into 3 germ layers in vitro and in vivo. |
| T7 | 929-1230 | Sentence | denotes | Microarray analysis showed the expression of the pluripotency markers, PODXL, REX1, SOX2, KLF5 and NR6A1, was significantly higher compared with porcine embryonic fibroblasts (PEF), but expression of OCT4, TBX3, REX1, LIN28A and DPPA5, was lower compared to the whole blastocysts or ICM of blastocyst. |
| T8 | 1231-1412 | Sentence | denotes | Our results showed that porcine embryonic stem-like cells can be established from in vitro-produced blastocyst-stage embryos, which promote porcine naive ES cells to be established. |
GlyCosmos15-FMA
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 71-81 | Body_part | denotes | Blastocyst | FMA:83041 |
| T2 | 88-95 | Body_part | denotes | Embryos | FMA:296970 |
| T3 | 176-183 | Body_part | denotes | embryos | FMA:296970 |
| T4 | 313-328 | Body_part | denotes | inner cell mass | FMA:86557 |
| T5 | 330-333 | Body_part | denotes | ICM | FMA:86557 |
| T6 | 366-376 | Body_part | denotes | blastocyst | FMA:83041 |
| T7 | 399-409 | Body_part | denotes | fibroblast | FMA:63877 |
| T8 | 533-553 | Body_part | denotes | embryonic stem cells | FMA:82841 |
| T9 | 577-585 | Body_part | denotes | epiblast | FMA:296704 |
| T10 | 586-596 | Body_part | denotes | stem cells | FMA:63368 |
| T11 | 895-906 | Body_part | denotes | germ layers | FMA:293071|FMA:69069 |
| T13 | 1092-1103 | Body_part | denotes | fibroblasts | FMA:63877 |
| T14 | 1197-1208 | Body_part | denotes | blastocysts | FMA:83041 |
| T15 | 1212-1215 | Body_part | denotes | ICM | FMA:86557 |
| T16 | 1219-1229 | Body_part | denotes | blastocyst | FMA:83041 |
| T17 | 1331-1341 | Body_part | denotes | blastocyst | FMA:83041 |
| T18 | 1348-1355 | Body_part | denotes | embryos | FMA:296970 |
GlyCosmos15-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 32-36 | Body_part | denotes | Stem | http://purl.obolibrary.org/obo/MAT_0000239 |
| T2 | 71-81 | Body_part | denotes | Blastocyst | http://purl.obolibrary.org/obo/MAT_0000067|http://purl.obolibrary.org/obo/MAT_0000396 |
| T4 | 88-95 | Body_part | denotes | Embryos | http://purl.obolibrary.org/obo/MAT_0000226 |
| T5 | 130-134 | Body_part | denotes | stem | http://purl.obolibrary.org/obo/MAT_0000239 |
| T6 | 176-183 | Body_part | denotes | embryos | http://purl.obolibrary.org/obo/MAT_0000226 |
| T7 | 264-268 | Body_part | denotes | stem | http://purl.obolibrary.org/obo/MAT_0000239 |
| T8 | 313-328 | Body_part | denotes | inner cell mass | http://purl.obolibrary.org/obo/MAT_0000250 |
| T9 | 330-333 | Body_part | denotes | ICM | http://purl.obolibrary.org/obo/MAT_0000250 |
| T10 | 366-376 | Body_part | denotes | blastocyst | http://purl.obolibrary.org/obo/MAT_0000067|http://purl.obolibrary.org/obo/MAT_0000396 |
| T12 | 543-553 | Body_part | denotes | stem cells | http://purl.obolibrary.org/obo/MAT_0000185 |
| T13 | 577-585 | Body_part | denotes | epiblast | http://purl.obolibrary.org/obo/MAT_0000067 |
| T14 | 586-596 | Body_part | denotes | stem cells | http://purl.obolibrary.org/obo/MAT_0000185 |
| T15 | 1197-1208 | Body_part | denotes | blastocysts | http://purl.obolibrary.org/obo/MAT_0000067|http://purl.obolibrary.org/obo/MAT_0000396 |
| T17 | 1212-1215 | Body_part | denotes | ICM | http://purl.obolibrary.org/obo/MAT_0000250 |
| T18 | 1219-1229 | Body_part | denotes | blastocyst | http://purl.obolibrary.org/obo/MAT_0000067|http://purl.obolibrary.org/obo/MAT_0000396 |
| T20 | 1273-1277 | Body_part | denotes | stem | http://purl.obolibrary.org/obo/MAT_0000239 |
| T21 | 1331-1341 | Body_part | denotes | blastocyst | http://purl.obolibrary.org/obo/MAT_0000067|http://purl.obolibrary.org/obo/MAT_0000396 |
| T23 | 1348-1355 | Body_part | denotes | embryos | http://purl.obolibrary.org/obo/MAT_0000226 |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 527-532 | OrganismTaxon | denotes | human | 9606 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 71-81 | Body_part | denotes | Blastocyst | http://purl.obolibrary.org/obo/UBERON_0000358|http://purl.obolibrary.org/obo/UBERON_0002532 |
| T3 | 313-328 | Body_part | denotes | inner cell mass | http://purl.obolibrary.org/obo/UBERON_0000087 |
| T4 | 330-333 | Body_part | denotes | ICM | http://purl.obolibrary.org/obo/UBERON_0000087 |
| T5 | 366-376 | Body_part | denotes | blastocyst | http://purl.obolibrary.org/obo/UBERON_0000358|http://purl.obolibrary.org/obo/UBERON_0002532 |
| T7 | 399-409 | Body_part | denotes | fibroblast | http://purl.obolibrary.org/obo/CL_0000057 |
| T8 | 543-553 | Body_part | denotes | stem cells | http://purl.obolibrary.org/obo/CL_0000034 |
| T9 | 577-585 | Body_part | denotes | epiblast | http://purl.obolibrary.org/obo/UBERON_0002532 |
| T10 | 586-596 | Body_part | denotes | stem cells | http://purl.obolibrary.org/obo/CL_0000034 |
| T11 | 834-847 | Body_part | denotes | embryoid body | http://purl.obolibrary.org/obo/UBERON_0014374 |
| T12 | 849-851 | Body_part | denotes | EB | http://purl.obolibrary.org/obo/UBERON_0014374 |
| T13 | 895-906 | Body_part | denotes | germ layers | http://purl.obolibrary.org/obo/UBERON_0000923 |
| T14 | 1082-1103 | Body_part | denotes | embryonic fibroblasts | http://purl.obolibrary.org/obo/CL_2000042 |
| T15 | 1197-1208 | Body_part | denotes | blastocysts | http://purl.obolibrary.org/obo/UBERON_0000358|http://purl.obolibrary.org/obo/UBERON_0002532 |
| T17 | 1212-1215 | Body_part | denotes | ICM | http://purl.obolibrary.org/obo/UBERON_0000087 |
| T18 | 1219-1229 | Body_part | denotes | blastocyst | http://purl.obolibrary.org/obo/UBERON_0000358|http://purl.obolibrary.org/obo/UBERON_0002532 |
| T20 | 1331-1341 | Body_part | denotes | blastocyst | http://purl.obolibrary.org/obo/UBERON_0000358|http://purl.obolibrary.org/obo/UBERON_0002532 |
CL-cell
| Id | Subject | Object | Predicate | Lexical cue | cl_id |
|---|---|---|---|---|---|
| T1 | 399-409 | Cell | denotes | fibroblast | http://purl.obolibrary.org/obo/CL:0000057 |
| T2 | 533-553 | Cell | denotes | embryonic stem cells | http://purl.obolibrary.org/obo/CL:0002322 |
| T3 | 586-596 | Cell | denotes | stem cells | http://purl.obolibrary.org/obo/CL:0000034 |
| T4 | 1082-1103 | Cell | denotes | embryonic fibroblasts | http://purl.obolibrary.org/obo/CL:2000042 |