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LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
11139 0-4 GeneOrGeneProduct denotes MOL1 NCBIGene:835209
11140 44-55 OrganismTaxon denotes Arabidopsis NCBITaxon:3702
11141 276-287 GeneOrGeneProduct denotes CLE peptide NCBIGene:820713|NCBIGene:821957|NCBIGene:832170
11142 292-332 GeneOrGeneProduct denotes leucine-rich repeat receptor-like kinase NCBIGene:835209|NCBIGene:836269
11143 334-341 GeneOrGeneProduct denotes LRR-RLK NCBIGene:835209|NCBIGene:836269
11144 505-512 GeneOrGeneProduct denotes LRR-RLK NCBIGene:835209|NCBIGene:836269
11145 513-517 GeneOrGeneProduct denotes MOL1 NCBIGene:835209
11146 558-578 OrganismTaxon denotes Arabidopsis thaliana NCBITaxon:3702
11147 633-637 GeneOrGeneProduct denotes MOL1 NCBIGene:835209
11148 718-723 GeneOrGeneProduct denotes CLE41 NCBIGene:822075
11149 724-727 GeneOrGeneProduct denotes PXY NCBIGene:836269
11150 774-778 GeneOrGeneProduct denotes MOL1 NCBIGene:835209
11151 813-818 GeneOrGeneProduct denotes CLE41 NCBIGene:822075
11152 819-822 GeneOrGeneProduct denotes PXY NCBIGene:836269
11153 871-875 GeneOrGeneProduct denotes MOL1 NCBIGene:835209
11154 964-968 GeneOrGeneProduct denotes MOL1 NCBIGene:835209
11155 973-976 GeneOrGeneProduct denotes PXY NCBIGene:836269
11156 983-991 GeneOrGeneProduct denotes LRR-RLKs NCBIGene:835209|NCBIGene:836269
11157 1088-1092 GeneOrGeneProduct denotes MOL1 NCBIGene:835209
11158 1101-1104 GeneOrGeneProduct denotes PXY NCBIGene:836269
11159 1123-1127 GeneOrGeneProduct denotes CLV1 NCBIGene:843915
11160 1207-1211 GeneOrGeneProduct denotes mol1 NCBIGene:835209
11161 1241-1245 GeneOrGeneProduct denotes MOL1 NCBIGene:835209
11162 1293-1301 ChemicalEntity denotes ethylene MESH:D005030
11163 1306-1319 ChemicalEntity denotes jasmonic acid MESH:C011006
11164 1408-1419 OrganismTaxon denotes Arabidopsis NCBITaxon:3702

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-56 Sentence denotes MOL1 is required for cambium homeostasis in Arabidopsis.
T2 57-167 Sentence denotes Plants maintain pools of pluripotent stem cells which allow them to constantly produce new tissues and organs.
T3 168-352 Sentence denotes Stem cell homeostasis in shoot and root tips depends on negative regulation by ligand-receptor pairs of the CLE peptide and leucine-rich repeat receptor-like kinase (LRR-RLK) families.
T4 353-482 Sentence denotes However, regulation of the cambium, the stem cell niche required for lateral growth of shoots and roots, is poorly characterized.
T5 483-579 Sentence denotes Here we show that the LRR-RLK MOL1 is necessary for cambium homeostasis in Arabidopsis thaliana.
T6 580-745 Sentence denotes By employing promoter reporter lines, we reveal that MOL1 is active in a domain that is distinct from the domain of the positively acting CLE41/PXY signaling module.
T7 746-933 Sentence denotes In particular, we show that MOL1 acts in an opposing manner to the CLE41/PXY module and that changing the domain or level of MOL1 expression both result in disturbed cambium organization.
T8 934-1074 Sentence denotes Underlining discrete roles of MOL1 and PXY, both LRR-RLKs are not able to replace each other when their expression domains are interchanged.
T9 1075-1168 Sentence denotes Furthermore, MOL1 but not PXY is able to rescue CLV1 deficiency in the shoot apical meristem.
T10 1169-1425 Sentence denotes By identifying genes mis-expressed in mol1 mutants, we demonstrate that MOL1 represses genes associated with stress-related ethylene and jasmonic acid hormone signaling pathways which have known roles in coordinating lateral growth of the Arabidopsis stem.
T11 1426-1712 Sentence denotes Our findings provide evidence that common regulatory mechanisms in different plant stem cell niches are adapted to specific niche anatomies and emphasize the importance of a complex spatial organization of intercellular signaling cascades for a strictly bidirectional tissue production.

LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 44-55 OrganismTaxon denotes Arabidopsis NCBItxid:3701
T2 57-63 OrganismTaxon denotes Plants NCBItxid:3193
T3 203-207 OrganismTaxon denotes root NCBItxid:1
T4 558-578 OrganismTaxon denotes Arabidopsis thaliana NCBItxid:3702
T5 1408-1419 OrganismTaxon denotes Arabidopsis NCBItxid:3701

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes MOL1
T2 57-63 GeneOrGeneProduct denotes Plants
T3 99-104 GeneOrGeneProduct denotes cells
T4 117-121 GeneOrGeneProduct denotes them
T5 173-177 GeneOrGeneProduct denotes cell
T6 203-207 GeneOrGeneProduct denotes root
T7 233-243 GeneOrGeneProduct denotes regulation
T8 254-262 GeneOrGeneProduct denotes receptor
T9 263-268 GeneOrGeneProduct denotes pairs
T10 292-332 GeneOrGeneProduct denotes leucine-rich repeat receptor-like kinase
T11 334-341 GeneOrGeneProduct denotes LRR-RLK
T12 362-372 GeneOrGeneProduct denotes regulation
T13 398-402 GeneOrGeneProduct denotes cell
T14 422-429 GeneOrGeneProduct denotes lateral
T15 430-436 GeneOrGeneProduct denotes growth
T16 451-456 GeneOrGeneProduct denotes roots
T17 505-512 GeneOrGeneProduct denotes LRR-RLK
T18 513-517 GeneOrGeneProduct denotes MOL1
T19 611-616 GeneOrGeneProduct denotes lines
T20 633-637 GeneOrGeneProduct denotes MOL1
T21 641-647 GeneOrGeneProduct denotes active
T22 711-717 GeneOrGeneProduct denotes acting
T23 718-723 GeneOrGeneProduct denotes CLE41
T24 774-778 GeneOrGeneProduct denotes MOL1
T25 779-783 GeneOrGeneProduct denotes acts
T26 813-818 GeneOrGeneProduct denotes CLE41
T27 871-875 GeneOrGeneProduct denotes MOL1
T28 964-968 GeneOrGeneProduct denotes MOL1
T29 1021-1026 GeneOrGeneProduct denotes other
T30 1088-1092 GeneOrGeneProduct denotes MOL1
T31 1123-1127 GeneOrGeneProduct denotes CLV1
T32 1152-1167 GeneOrGeneProduct denotes apical meristem
T33 1207-1211 GeneOrGeneProduct denotes mol1
T34 1212-1219 GeneOrGeneProduct denotes mutants
T35 1241-1245 GeneOrGeneProduct denotes MOL1
T36 1315-1319 GeneOrGeneProduct denotes acid
T37 1320-1327 GeneOrGeneProduct denotes hormone
T38 1386-1393 GeneOrGeneProduct denotes lateral
T39 1394-1400 GeneOrGeneProduct denotes growth
T40 1430-1438 GeneOrGeneProduct denotes findings
T41 1503-1508 GeneOrGeneProduct denotes plant
T42 1514-1518 GeneOrGeneProduct denotes cell
T43 1608-1615 GeneOrGeneProduct denotes spatial
T44 1701-1711 GeneOrGeneProduct denotes production

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes MOL1
T2 173-177 GeneOrGeneProduct denotes cell
T3 254-262 GeneOrGeneProduct denotes receptor
T4 292-332 GeneOrGeneProduct denotes leucine-rich repeat receptor-like kinase
T5 334-341 GeneOrGeneProduct denotes LRR-RLK
T6 398-402 GeneOrGeneProduct denotes cell
T7 430-436 GeneOrGeneProduct denotes growth
T8 505-512 GeneOrGeneProduct denotes LRR-RLK
T9 513-517 GeneOrGeneProduct denotes MOL1
T10 611-616 GeneOrGeneProduct denotes lines
T11 633-637 GeneOrGeneProduct denotes MOL1
T12 718-723 GeneOrGeneProduct denotes CLE41
T13 774-778 GeneOrGeneProduct denotes MOL1
T14 813-818 GeneOrGeneProduct denotes CLE41
T15 871-875 GeneOrGeneProduct denotes MOL1
T16 964-968 GeneOrGeneProduct denotes MOL1
T17 1021-1026 GeneOrGeneProduct denotes other
T18 1088-1092 GeneOrGeneProduct denotes MOL1
T19 1123-1127 GeneOrGeneProduct denotes CLV1
T20 1152-1167 GeneOrGeneProduct denotes apical meristem
T21 1241-1245 GeneOrGeneProduct denotes MOL1
T22 1315-1319 GeneOrGeneProduct denotes acid
T23 1320-1327 GeneOrGeneProduct denotes hormone
T24 1394-1400 GeneOrGeneProduct denotes growth
T25 1503-1508 GeneOrGeneProduct denotes plant
T26 1514-1518 GeneOrGeneProduct denotes cell
T27 1608-1615 GeneOrGeneProduct denotes spatial

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 0-4 GeneOrGeneProduct denotes MOL1
T2 292-332 GeneOrGeneProduct denotes leucine-rich repeat receptor-like kinase
T3 334-341 GeneOrGeneProduct denotes LRR-RLK
T4 505-512 GeneOrGeneProduct denotes LRR-RLK
T5 513-517 GeneOrGeneProduct denotes MOL1
T6 633-637 GeneOrGeneProduct denotes MOL1
T7 718-723 GeneOrGeneProduct denotes CLE41
T8 774-778 GeneOrGeneProduct denotes MOL1
T9 813-818 GeneOrGeneProduct denotes CLE41
T10 871-875 GeneOrGeneProduct denotes MOL1
T11 964-968 GeneOrGeneProduct denotes MOL1
T12 1088-1092 GeneOrGeneProduct denotes MOL1
T13 1123-1127 GeneOrGeneProduct denotes CLV1
T14 1152-1167 GeneOrGeneProduct denotes apical meristem
T15 1241-1245 GeneOrGeneProduct denotes MOL1
T16 1503-1508 GeneOrGeneProduct denotes plant

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 276-279 DiseaseOrPhenotypicFeature denotes CLE 0013662|0007536
T3 300-304 DiseaseOrPhenotypicFeature denotes rich 0015404

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 292-299 ChemicalEntity denotes leucine http://purl.obolibrary.org/obo/CHEBI_25017
T2 1293-1301 ChemicalEntity denotes ethylene C036216|http://purl.obolibrary.org/obo/CHEBI_29362
T4 1306-1319 ChemicalEntity denotes jasmonic acid C011006|http://purl.obolibrary.org/obo/CHEBI_18292

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 44-55 OrganismTaxon denotes Arabidopsis
T2 57-63 OrganismTaxon denotes Plants
T3 203-207 OrganismTaxon denotes root
T4 558-578 OrganismTaxon denotes Arabidopsis thaliana
T5 1408-1419 OrganismTaxon denotes Arabidopsis

LitCoin-training-merged

Id Subject Object Predicate Lexical cue ID:
T4 1306-1319 ChemicalEntity denotes jasmonic acid http://purl.obolibrary.org/obo/CHEBI_18292|C011006
T2 1293-1301 ChemicalEntity denotes ethylene http://purl.obolibrary.org/obo/CHEBI_29362|C036216
T1 292-299 ChemicalEntity denotes leucine http://purl.obolibrary.org/obo/CHEBI_25017
T16 1503-1508 GeneOrGeneProduct denotes plant
T15 1241-1245 GeneOrGeneProduct denotes MOL1
T14 1152-1167 GeneOrGeneProduct denotes apical meristem
T13 1123-1127 GeneOrGeneProduct denotes CLV1
T12 1088-1092 GeneOrGeneProduct denotes MOL1
T11 964-968 GeneOrGeneProduct denotes MOL1
T10 871-875 GeneOrGeneProduct denotes MOL1
T9 813-818 GeneOrGeneProduct denotes CLE41
T8 774-778 GeneOrGeneProduct denotes MOL1
T7 718-723 GeneOrGeneProduct denotes CLE41
T6 633-637 GeneOrGeneProduct denotes MOL1
T5 513-517 GeneOrGeneProduct denotes MOL1
T95245 505-512 GeneOrGeneProduct denotes LRR-RLK
T3 334-341 GeneOrGeneProduct denotes LRR-RLK
T68968 292-332 GeneOrGeneProduct denotes leucine-rich repeat receptor-like kinase
T71170 0-4 GeneOrGeneProduct denotes MOL1
T54106 1408-1419 OrganismTaxon denotes Arabidopsis
T23940 558-578 OrganismTaxon denotes Arabidopsis thaliana
T69510 203-207 OrganismTaxon denotes root
T57425 57-63 OrganismTaxon denotes Plants
T2247 44-55 OrganismTaxon denotes Arabidopsis