PubMed:26883028
Annnotations
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 188-191 | Glycan_Motif | denotes | Gb3 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00059MO |
| T2 | 917-920 | Glycan_Motif | denotes | SM3 | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G20044TD |
Glycosmos6-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 188-191 | http://www.glycoepitope.jp/epitopes/EP0071 | denotes | Gb3 |
| T2 | 917-920 | http://www.glycoepitope.jp/epitopes/EP0079 | denotes | SM3 |
Glycosmos6-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 547-553 | http://purl.obolibrary.org/obo/MAT_0000119 | denotes | kidney |
| T2 | 668-674 | http://purl.obolibrary.org/obo/MAT_0000119 | denotes | kidney |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-159 | Sentence | denotes | Immunization of A4galt-deficient mice with glycosphingolipids from renal cell cancers resulted in the generation of anti-sulfoglycolipid monoclonal antibodies. |
| TextSentencer_T2 | 160-423 | Sentence | denotes | In this study, we immunized Gb3/CD77 synthase gene (A4galt) knockout (KO) mice with glycosphingolipids (GSLs) extracted from 3 renal cell cancer (RCC) cell lines to raise monoclonal antibodies (mAbs) reactive with globo-series GSLs specifically expressed in RCCs. |
| TextSentencer_T3 | 424-560 | Sentence | denotes | Although a number of mAbs reactive with globo-series GSLs were generated, they reacted with both RCC cell lines and normal kidney cells. |
| TextSentencer_T4 | 561-772 | Sentence | denotes | When we analyzed recognized antigens by mAbs that were specifically reactive with RCC, but not with normal kidney cells at least on the cell surface, many of them turned out to be reactive with sulfoglycolipids. |
| TextSentencer_T5 | 773-944 | Sentence | denotes | Eight out of 11 RCC-specific mAbs were reactive with SM2 alone, and the other 3 mAbs were more broadly reactive with sulfated glycolipids, i.e. SM3 and SM4 as well as SM2. |
| TextSentencer_T6 | 945-1094 | Sentence | denotes | In the immunohistochemistry, these anti-sulfoglycolipids mAbs showed RCC-specific reaction, with no or minimal reaction with adjacent normal tissues. |
| TextSentencer_T7 | 1095-1279 | Sentence | denotes | Thus, immunization of A4galt KO mice with RCC-derived GSLs resulted in the generation of anti sulfated GSL mAbs, and these mAbs may be applicable for the therapeutics for RCC patients. |
| T1 | 0-159 | Sentence | denotes | Immunization of A4galt-deficient mice with glycosphingolipids from renal cell cancers resulted in the generation of anti-sulfoglycolipid monoclonal antibodies. |
| T2 | 160-423 | Sentence | denotes | In this study, we immunized Gb3/CD77 synthase gene (A4galt) knockout (KO) mice with glycosphingolipids (GSLs) extracted from 3 renal cell cancer (RCC) cell lines to raise monoclonal antibodies (mAbs) reactive with globo-series GSLs specifically expressed in RCCs. |
| T3 | 424-560 | Sentence | denotes | Although a number of mAbs reactive with globo-series GSLs were generated, they reacted with both RCC cell lines and normal kidney cells. |
| T4 | 561-772 | Sentence | denotes | When we analyzed recognized antigens by mAbs that were specifically reactive with RCC, but not with normal kidney cells at least on the cell surface, many of them turned out to be reactive with sulfoglycolipids. |
| T5 | 773-944 | Sentence | denotes | Eight out of 11 RCC-specific mAbs were reactive with SM2 alone, and the other 3 mAbs were more broadly reactive with sulfated glycolipids, i.e. SM3 and SM4 as well as SM2. |
| T6 | 945-1094 | Sentence | denotes | In the immunohistochemistry, these anti-sulfoglycolipids mAbs showed RCC-specific reaction, with no or minimal reaction with adjacent normal tissues. |
| T7 | 1095-1279 | Sentence | denotes | Thus, immunization of A4galt KO mice with RCC-derived GSLs resulted in the generation of anti sulfated GSL mAbs, and these mAbs may be applicable for the therapeutics for RCC patients. |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 188-191 | https://glytoucan.org/Structures/Glycans/G00059MO | denotes | Gb3 |
| T2 | 917-920 | https://glytoucan.org/Structures/Glycans/G20044TD | denotes | SM3 |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 188-191 | Glycan | denotes | Gb3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00059MO |
| T2 | 917-920 | Glycan | denotes | SM3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G20044TD |
HP-phenotype
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 298-304 | Phenotype | denotes | cancer | HP:0002664 |
mondo_disease
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 67-85 | Disease | denotes | renal cell cancers | http://purl.obolibrary.org/obo/MONDO_0003007|http://purl.obolibrary.org/obo/MONDO_0005549 |
| T3 | 287-304 | Disease | denotes | renal cell cancer | http://purl.obolibrary.org/obo/MONDO_0003007|http://purl.obolibrary.org/obo/MONDO_0005549 |
| T5 | 306-309 | Disease | denotes | RCC | http://purl.obolibrary.org/obo/MONDO_0005086|http://purl.obolibrary.org/obo/MONDO_0005549|http://purl.obolibrary.org/obo/MONDO_0007763|http://purl.obolibrary.org/obo/MONDO_0044874|http://purl.obolibrary.org/obo/MONDO_0003007 |
| T10 | 521-524 | Disease | denotes | RCC | http://purl.obolibrary.org/obo/MONDO_0005086|http://purl.obolibrary.org/obo/MONDO_0005549|http://purl.obolibrary.org/obo/MONDO_0007763|http://purl.obolibrary.org/obo/MONDO_0044874|http://purl.obolibrary.org/obo/MONDO_0003007 |
| T15 | 643-646 | Disease | denotes | RCC | http://purl.obolibrary.org/obo/MONDO_0005086|http://purl.obolibrary.org/obo/MONDO_0005549|http://purl.obolibrary.org/obo/MONDO_0007763|http://purl.obolibrary.org/obo/MONDO_0044874|http://purl.obolibrary.org/obo/MONDO_0003007 |
| T20 | 789-792 | Disease | denotes | RCC | http://purl.obolibrary.org/obo/MONDO_0005086|http://purl.obolibrary.org/obo/MONDO_0005549|http://purl.obolibrary.org/obo/MONDO_0007763|http://purl.obolibrary.org/obo/MONDO_0044874|http://purl.obolibrary.org/obo/MONDO_0003007 |
| T25 | 1014-1017 | Disease | denotes | RCC | http://purl.obolibrary.org/obo/MONDO_0005086|http://purl.obolibrary.org/obo/MONDO_0005549|http://purl.obolibrary.org/obo/MONDO_0007763|http://purl.obolibrary.org/obo/MONDO_0044874|http://purl.obolibrary.org/obo/MONDO_0003007 |
| T30 | 1137-1140 | Disease | denotes | RCC | http://purl.obolibrary.org/obo/MONDO_0005086|http://purl.obolibrary.org/obo/MONDO_0005549|http://purl.obolibrary.org/obo/MONDO_0007763|http://purl.obolibrary.org/obo/MONDO_0044874|http://purl.obolibrary.org/obo/MONDO_0003007 |
| T35 | 1266-1269 | Disease | denotes | RCC | http://purl.obolibrary.org/obo/MONDO_0005086|http://purl.obolibrary.org/obo/MONDO_0005549|http://purl.obolibrary.org/obo/MONDO_0007763|http://purl.obolibrary.org/obo/MONDO_0044874|http://purl.obolibrary.org/obo/MONDO_0003007 |
Glycan-GlyCosmos
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 188-191 | Glycan | denotes | Gb3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G00059MO |
| T2 | 917-920 | Glycan | denotes | SM3 | https://api.glycosmos.org/wurcs2image/latest/png/binary/G20044TD |
GlyCosmos-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 188-191 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | Gb3 | http://www.glycoepitope.jp/epitopes/EP0071 |
| T2 | 917-920 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | SM3 | http://www.glycoepitope.jp/epitopes/EP0079 |
GlyCosmos15-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 298-304 | Phenotype | denotes | cancer | HP:0002664 |
GlyCosmos15-CL
| Id | Subject | Object | Predicate | Lexical cue | cl_id |
|---|---|---|---|---|---|
| T1 | 547-559 | Cell | denotes | kidney cells | http://purl.obolibrary.org/obo/CL:1000497 |
| T2 | 668-680 | Cell | denotes | kidney cells | http://purl.obolibrary.org/obo/CL:1000497 |
GlyCosmos15-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 547-559 | Body_part | denotes | kidney cells | http://purl.obolibrary.org/obo/CL_1000497 |
| T2 | 668-680 | Body_part | denotes | kidney cells | http://purl.obolibrary.org/obo/CL_1000497 |
GlyCosmos15-Taxon
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 33-37 | Organism | denotes | mice | 10088 |
| T2 | 234-238 | Organism | denotes | mice | 10088 |
| T3 | 1127-1131 | Organism | denotes | mice | 10088 |
| T4 | 1270-1278 | Organism | denotes | patients | 9606 |
GlyCosmos15-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 188-191 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | Gb3 | http://www.glycoepitope.jp/epitopes/EP0071 |
| T2 | 917-920 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | SM3 | http://www.glycoepitope.jp/epitopes/EP0079 |
GlyCosmos15-Sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-159 | Sentence | denotes | Immunization of A4galt-deficient mice with glycosphingolipids from renal cell cancers resulted in the generation of anti-sulfoglycolipid monoclonal antibodies. |
| T2 | 160-423 | Sentence | denotes | In this study, we immunized Gb3/CD77 synthase gene (A4galt) knockout (KO) mice with glycosphingolipids (GSLs) extracted from 3 renal cell cancer (RCC) cell lines to raise monoclonal antibodies (mAbs) reactive with globo-series GSLs specifically expressed in RCCs. |
| T3 | 424-560 | Sentence | denotes | Although a number of mAbs reactive with globo-series GSLs were generated, they reacted with both RCC cell lines and normal kidney cells. |
| T4 | 561-772 | Sentence | denotes | When we analyzed recognized antigens by mAbs that were specifically reactive with RCC, but not with normal kidney cells at least on the cell surface, many of them turned out to be reactive with sulfoglycolipids. |
| T5 | 773-944 | Sentence | denotes | Eight out of 11 RCC-specific mAbs were reactive with SM2 alone, and the other 3 mAbs were more broadly reactive with sulfated glycolipids, i.e. SM3 and SM4 as well as SM2. |
| T6 | 945-1094 | Sentence | denotes | In the immunohistochemistry, these anti-sulfoglycolipids mAbs showed RCC-specific reaction, with no or minimal reaction with adjacent normal tissues. |
| T7 | 1095-1279 | Sentence | denotes | Thus, immunization of A4galt KO mice with RCC-derived GSLs resulted in the generation of anti sulfated GSL mAbs, and these mAbs may be applicable for the therapeutics for RCC patients. |
GlyCosmos15-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 67-85 | Disease | denotes | renal cell cancers | MONDO:0003007|MONDO:0005549 |
| T3 | 287-304 | Disease | denotes | renal cell cancer | MONDO:0003007|MONDO:0005549 |
| T5 | 306-309 | Disease | denotes | RCC | MONDO:0003007|MONDO:0005549 |
| T7 | 521-524 | Disease | denotes | RCC | MONDO:0003007|MONDO:0005549 |
| T9 | 643-646 | Disease | denotes | RCC | MONDO:0003007|MONDO:0005549 |
| T11 | 789-792 | Disease | denotes | RCC | MONDO:0003007|MONDO:0005549 |
| T13 | 1014-1017 | Disease | denotes | RCC | MONDO:0003007|MONDO:0005549 |
| T15 | 1137-1140 | Disease | denotes | RCC | MONDO:0003007|MONDO:0005549 |
| T17 | 1266-1269 | Disease | denotes | RCC | MONDO:0003007|MONDO:0005549 |
GlyCosmos15-FMA
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 67-77 | Body_part | denotes | renal cell | FMA:86785 |
| T2 | 287-297 | Body_part | denotes | renal cell | FMA:86785 |
| T3 | 547-553 | Body_part | denotes | kidney | FMA:7203 |
| T4 | 668-674 | Body_part | denotes | kidney | FMA:7203 |
| T5 | 697-709 | Body_part | denotes | cell surface | FMA:67653 |
| T6 | 1086-1093 | Body_part | denotes | tissues | FMA:9637 |
GlyCosmos15-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 547-553 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/MAT_0000119 |
| T2 | 668-674 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/MAT_0000119 |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 33-37 | OrganismTaxon | denotes | mice | 10088 |
| T2 | 234-238 | OrganismTaxon | denotes | mice | 10088 |
| T3 | 1127-1131 | OrganismTaxon | denotes | mice | 10088 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 547-559 | Body_part | denotes | kidney cells | http://purl.obolibrary.org/obo/CL_1000497 |
| T2 | 668-680 | Body_part | denotes | kidney cells | http://purl.obolibrary.org/obo/CL_1000497 |
Anatomy-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 547-553 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/MAT_0000119 |
| T2 | 668-674 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/MAT_0000119 |
CL-cell
| Id | Subject | Object | Predicate | Lexical cue | cl_id |
|---|---|---|---|---|---|
| T1 | 547-559 | Cell | denotes | kidney cells | http://purl.obolibrary.org/obo/CL:1000497 |
| T2 | 668-680 | Cell | denotes | kidney cells | http://purl.obolibrary.org/obo/CL:1000497 |