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DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
26825466-4#40#43#gene948 613-616 gene948 denotes FAT
26825466-4#40#43#gene2195 613-616 gene2195 denotes FAT
26825466-4#40#43#gene948 613-616 gene948 denotes FAT
26825466-4#40#43#gene2195 613-616 gene2195 denotes FAT
26825466-4#161#165#gene999 734-738 gene999 denotes CDH1
26825466-4#183#187#gene1000 756-760 gene1000 denotes CDH2
26825466-4#82#95#diseaseC0006142 655-668 diseaseC0006142 denotes breast cancer
26825466-4#82#95#diseaseC0678222 655-668 diseaseC0678222 denotes breast cancer
26825466-4#82#95#diseaseC0006142 655-668 diseaseC0006142 denotes breast cancer
26825466-4#82#95#diseaseC0678222 655-668 diseaseC0678222 denotes breast cancer
26825466-4#331#342#diseaseC0027627 904-915 diseaseC0027627 denotes metastasize
26825466-4#82#95#diseaseC0006142 655-668 diseaseC0006142 denotes breast cancer
26825466-4#82#95#diseaseC0678222 655-668 diseaseC0678222 denotes breast cancer
26825466-4#331#342#diseaseC0027627 904-915 diseaseC0027627 denotes metastasize
26825466-4#82#95#diseaseC0006142 655-668 diseaseC0006142 denotes breast cancer
26825466-4#82#95#diseaseC0678222 655-668 diseaseC0678222 denotes breast cancer
26825466-4#331#342#diseaseC0027627 904-915 diseaseC0027627 denotes metastasize
40#43#gene94882#95#diseaseC0006142 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene94882#95#diseaseC0678222 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene94882#95#diseaseC0006142 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene94882#95#diseaseC0678222 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene948331#342#diseaseC0027627 26825466-4#40#43#gene948 26825466-4#331#342#diseaseC0027627 associated_with FAT,metastasize
40#43#gene94882#95#diseaseC0006142 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene94882#95#diseaseC0678222 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene948331#342#diseaseC0027627 26825466-4#40#43#gene948 26825466-4#331#342#diseaseC0027627 associated_with FAT,metastasize
40#43#gene94882#95#diseaseC0006142 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene94882#95#diseaseC0678222 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene948331#342#diseaseC0027627 26825466-4#40#43#gene948 26825466-4#331#342#diseaseC0027627 associated_with FAT,metastasize
40#43#gene219582#95#diseaseC0006142 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene219582#95#diseaseC0678222 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene219582#95#diseaseC0006142 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene219582#95#diseaseC0678222 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene2195331#342#diseaseC0027627 26825466-4#40#43#gene2195 26825466-4#331#342#diseaseC0027627 associated_with FAT,metastasize
40#43#gene219582#95#diseaseC0006142 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene219582#95#diseaseC0678222 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene2195331#342#diseaseC0027627 26825466-4#40#43#gene2195 26825466-4#331#342#diseaseC0027627 associated_with FAT,metastasize
40#43#gene219582#95#diseaseC0006142 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene219582#95#diseaseC0678222 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene2195331#342#diseaseC0027627 26825466-4#40#43#gene2195 26825466-4#331#342#diseaseC0027627 associated_with FAT,metastasize
40#43#gene94882#95#diseaseC0006142 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene94882#95#diseaseC0678222 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene94882#95#diseaseC0006142 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene94882#95#diseaseC0678222 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene948331#342#diseaseC0027627 26825466-4#40#43#gene948 26825466-4#331#342#diseaseC0027627 associated_with FAT,metastasize
40#43#gene94882#95#diseaseC0006142 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene94882#95#diseaseC0678222 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene948331#342#diseaseC0027627 26825466-4#40#43#gene948 26825466-4#331#342#diseaseC0027627 associated_with FAT,metastasize
40#43#gene94882#95#diseaseC0006142 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene94882#95#diseaseC0678222 26825466-4#40#43#gene948 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene948331#342#diseaseC0027627 26825466-4#40#43#gene948 26825466-4#331#342#diseaseC0027627 associated_with FAT,metastasize
40#43#gene219582#95#diseaseC0006142 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene219582#95#diseaseC0678222 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene219582#95#diseaseC0006142 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene219582#95#diseaseC0678222 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene2195331#342#diseaseC0027627 26825466-4#40#43#gene2195 26825466-4#331#342#diseaseC0027627 associated_with FAT,metastasize
40#43#gene219582#95#diseaseC0006142 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene219582#95#diseaseC0678222 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene2195331#342#diseaseC0027627 26825466-4#40#43#gene2195 26825466-4#331#342#diseaseC0027627 associated_with FAT,metastasize
40#43#gene219582#95#diseaseC0006142 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0006142 associated_with FAT,breast cancer
40#43#gene219582#95#diseaseC0678222 26825466-4#40#43#gene2195 26825466-4#82#95#diseaseC0678222 associated_with FAT,breast cancer
40#43#gene2195331#342#diseaseC0027627 26825466-4#40#43#gene2195 26825466-4#331#342#diseaseC0027627 associated_with FAT,metastasize
161#165#gene99982#95#diseaseC0006142 26825466-4#161#165#gene999 26825466-4#82#95#diseaseC0006142 associated_with CDH1,breast cancer
161#165#gene99982#95#diseaseC0678222 26825466-4#161#165#gene999 26825466-4#82#95#diseaseC0678222 associated_with CDH1,breast cancer
161#165#gene99982#95#diseaseC0006142 26825466-4#161#165#gene999 26825466-4#82#95#diseaseC0006142 associated_with CDH1,breast cancer
161#165#gene99982#95#diseaseC0678222 26825466-4#161#165#gene999 26825466-4#82#95#diseaseC0678222 associated_with CDH1,breast cancer
161#165#gene999331#342#diseaseC0027627 26825466-4#161#165#gene999 26825466-4#331#342#diseaseC0027627 associated_with CDH1,metastasize
161#165#gene99982#95#diseaseC0006142 26825466-4#161#165#gene999 26825466-4#82#95#diseaseC0006142 associated_with CDH1,breast cancer
161#165#gene99982#95#diseaseC0678222 26825466-4#161#165#gene999 26825466-4#82#95#diseaseC0678222 associated_with CDH1,breast cancer
161#165#gene999331#342#diseaseC0027627 26825466-4#161#165#gene999 26825466-4#331#342#diseaseC0027627 associated_with CDH1,metastasize
161#165#gene99982#95#diseaseC0006142 26825466-4#161#165#gene999 26825466-4#82#95#diseaseC0006142 associated_with CDH1,breast cancer
161#165#gene99982#95#diseaseC0678222 26825466-4#161#165#gene999 26825466-4#82#95#diseaseC0678222 associated_with CDH1,breast cancer
161#165#gene999331#342#diseaseC0027627 26825466-4#161#165#gene999 26825466-4#331#342#diseaseC0027627 associated_with CDH1,metastasize
183#187#gene100082#95#diseaseC0006142 26825466-4#183#187#gene1000 26825466-4#82#95#diseaseC0006142 associated_with CDH2,breast cancer
183#187#gene100082#95#diseaseC0678222 26825466-4#183#187#gene1000 26825466-4#82#95#diseaseC0678222 associated_with CDH2,breast cancer
183#187#gene100082#95#diseaseC0006142 26825466-4#183#187#gene1000 26825466-4#82#95#diseaseC0006142 associated_with CDH2,breast cancer
183#187#gene100082#95#diseaseC0678222 26825466-4#183#187#gene1000 26825466-4#82#95#diseaseC0678222 associated_with CDH2,breast cancer
183#187#gene1000331#342#diseaseC0027627 26825466-4#183#187#gene1000 26825466-4#331#342#diseaseC0027627 associated_with CDH2,metastasize
183#187#gene100082#95#diseaseC0006142 26825466-4#183#187#gene1000 26825466-4#82#95#diseaseC0006142 associated_with CDH2,breast cancer
183#187#gene100082#95#diseaseC0678222 26825466-4#183#187#gene1000 26825466-4#82#95#diseaseC0678222 associated_with CDH2,breast cancer
183#187#gene1000331#342#diseaseC0027627 26825466-4#183#187#gene1000 26825466-4#331#342#diseaseC0027627 associated_with CDH2,metastasize
183#187#gene100082#95#diseaseC0006142 26825466-4#183#187#gene1000 26825466-4#82#95#diseaseC0006142 associated_with CDH2,breast cancer
183#187#gene100082#95#diseaseC0678222 26825466-4#183#187#gene1000 26825466-4#82#95#diseaseC0678222 associated_with CDH2,breast cancer
183#187#gene1000331#342#diseaseC0027627 26825466-4#183#187#gene1000 26825466-4#331#342#diseaseC0027627 associated_with CDH2,metastasize

DisGeNet-2017-sample

Id Subject Object Predicate Lexical cue
T2586 613-616 gene:948 denotes FAT
T2587 655-668 disease:C0006142 denotes breast cancer
T2588 904-915 disease:C0027627 denotes metastasize
T2589 734-738 gene:999 denotes CDH1
T2590 756-760 gene:1000 denotes CDH2
R1 T2586 T2587 associated_with FAT,breast cancer
R2 T2586 T2587 associated_with FAT,breast cancer
R3 T2586 T2587 associated_with FAT,breast cancer
R4 T2586 T2587 associated_with FAT,breast cancer
R5 T2586 T2588 associated_with FAT,metastasize
R6 T2586 T2588 associated_with FAT,metastasize
R7 T2589 T2587 associated_with CDH1,breast cancer
R8 T2589 T2587 associated_with CDH1,breast cancer
R9 T2589 T2588 associated_with CDH1,metastasize
R10 T2590 T2587 associated_with CDH2,breast cancer
R11 T2590 T2587 associated_with CDH2,breast cancer
R12 T2590 T2588 associated_with CDH2,metastasize

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-10 Sentence denotes Cadherins:
TextSentencer_T2 11-64 Sentence denotes The Superfamily Critically Involved in Breast Cancer.
TextSentencer_T3 65-245 Sentence denotes Breast cancer, one of the leading causes of mortality and morbidity among females, is regulated in part by diverse classes of adhesion molecules one of which is known as cadherins.
TextSentencer_T4 246-365 Sentence denotes Located at adherens junctions, the members of this superfamily are responsible for upholding proper cell-cell adhesion.
TextSentencer_T5 366-572 Sentence denotes Cadherins possess diverse structures and functions and any alteration in their structures or functions causes impeding of normal mammary cells development and maintenance, thus leading to breast malignancy.
TextSentencer_T6 573-943 Sentence denotes E-, N-, P-, VE-, Proto-, desmosomal and FAT cadherins have been found to regulate breast cancer in positive as well as negative fashion, whereby both Ecadherin (CDH1) and N-cadherin (CDH2) contribute significantly towards transitioning from epithelial state to mesenchymal state (EMT) and enacting the abnormal cells to invade and metastasize nearby and distant tissues.
TextSentencer_T7 944-1071 Sentence denotes Aberration in gene expression of cadherins can be either due to somatic or epigenetic silencing or via transcriptional factors.
TextSentencer_T8 1072-1386 Sentence denotes Besides other cadherins, E-cadherin which serves as hallmark of EMT is associated with several regulatory factors such as Snail, Slug, Twist, Zeb, KLF4, NFI, TBX2, SIX, b-Myb, COX-2, Arf6, FOXA2, GATA3 and SMAR1, which modulate E-cadherin gene transcription to promote or represses tumor invasion and colonization.
TextSentencer_T9 1387-1624 Sentence denotes Signaling molecules such as Notch, TGF-β, estrogen receptors, EGF and Wnt initiate numerous signaling cascades via these vital factors of cell programming, controlling expression of E-cadherin at transcriptional (mRNA) and protein level.
TextSentencer_T10 1625-1830 Sentence denotes Thus, interactions of cadherins with their roles in tumor suppression and oncogenic transformation can be beneficial in providing valuable insights for breast cancer diagnosis and therapeutics development.
T1 0-10 Sentence denotes Cadherins:
T2 11-64 Sentence denotes The Superfamily Critically Involved in Breast Cancer.
T3 65-245 Sentence denotes Breast cancer, one of the leading causes of mortality and morbidity among females, is regulated in part by diverse classes of adhesion molecules one of which is known as cadherins.
T4 246-365 Sentence denotes Located at adherens junctions, the members of this superfamily are responsible for upholding proper cell-cell adhesion.
T5 366-572 Sentence denotes Cadherins possess diverse structures and functions and any alteration in their structures or functions causes impeding of normal mammary cells development and maintenance, thus leading to breast malignancy.
T6 573-943 Sentence denotes E-, N-, P-, VE-, Proto-, desmosomal and FAT cadherins have been found to regulate breast cancer in positive as well as negative fashion, whereby both Ecadherin (CDH1) and N-cadherin (CDH2) contribute significantly towards transitioning from epithelial state to mesenchymal state (EMT) and enacting the abnormal cells to invade and metastasize nearby and distant tissues.
T7 944-1071 Sentence denotes Aberration in gene expression of cadherins can be either due to somatic or epigenetic silencing or via transcriptional factors.
T8 1072-1386 Sentence denotes Besides other cadherins, E-cadherin which serves as hallmark of EMT is associated with several regulatory factors such as Snail, Slug, Twist, Zeb, KLF4, NFI, TBX2, SIX, b-Myb, COX-2, Arf6, FOXA2, GATA3 and SMAR1, which modulate E-cadherin gene transcription to promote or represses tumor invasion and colonization.
T9 1387-1624 Sentence denotes Signaling molecules such as Notch, TGF-β, estrogen receptors, EGF and Wnt initiate numerous signaling cascades via these vital factors of cell programming, controlling expression of E-cadherin at transcriptional (mRNA) and protein level.
T10 1625-1830 Sentence denotes Thus, interactions of cadherins with their roles in tumor suppression and oncogenic transformation can be beneficial in providing valuable insights for breast cancer diagnosis and therapeutics development.

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 50-56 http://purl.obolibrary.org/obo/UBERON_0000310 denotes Breast
PD-UBERON-AE-B_T2 554-560 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T3 655-661 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T4 1777-1783 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T5 834-845 http://purl.obolibrary.org/obo/UBERON_0003104 denotes mesenchymal
PD-UBERON-AE-B_T6 935-942 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 834-845 http://purl.obolibrary.org/obo/UBERON_0003104 denotes mesenchymal
PD-UBERON-AE-B_T2 935-942 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
PD-UBERON-AE-B_T3 50-56 http://purl.obolibrary.org/obo/UBERON_0000310 denotes Breast
PD-UBERON-AE-B_T4 65-71 http://purl.obolibrary.org/obo/UBERON_0000310 denotes Breast
PD-UBERON-AE-B_T5 554-560 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T6 655-661 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T7 1777-1783 http://purl.obolibrary.org/obo/UBERON_0000310 denotes breast
PD-UBERON-AE-B_T8 1373-1385 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization