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pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 1291-1309 xzyao:17662 denotes cellular functions
M_1 453-473 xzyao:24351 denotes biological processes
M_2 1823-1843 xzyao:24351 denotes biological processes
M_3 193-209 funRiceGene:483, xzyao:396 denotes seed germination
M_4 594-610 funRiceGene:483, xzyao:396 denotes seed germination
M_5 168-172 PO:0009010, funRiceGene:180 denotes Seed
M_6 193-197 PO:0009010, funRiceGene:180 denotes seed
M_7 594-598 PO:0009010, funRiceGene:180 denotes seed
M_8 875-879 PO:0009010, funRiceGene:180 denotes seed
M_9 1864-1868 PO:0009010, funRiceGene:180 denotes seed
M_10 1269-1287 xzyao:14999 denotes nearly all aspects
M_11 163-172 xzyao:29448 denotes Rice Seed
M_12 188-197 xzyao:29448 denotes rice seed
M_13 589-598 xzyao:29448 denotes rice seed
M_14 870-879 xzyao:29448 denotes rice seed
M_15 1859-1868 xzyao:29448 denotes rice seed
M_16 188-209 xzyao:14620 denotes rice seed germination
M_17 589-610 xzyao:14620 denotes rice seed germination
M_18 1159-1169 xzyao:10364 denotes amino acid
M_19 1535-1545 hunflair:NA:Chemical denotes acetyl-CoA
M_20 1550-1562 hunflair:NA:Chemical denotes succinyl-CoA
M_21 1159-1169 hunflair:NA:Chemical denotes amino acid
M_22 629-635 hunflair:NA:Chemical denotes lysine
M_23 763-769 hunflair:NA:Chemical denotes lysine
M_24 1014-1020 hunflair:NA:Chemical denotes lysine
M_25 28-34 hunflair:NA:Chemical denotes Lysine
M_26 329-335 hunflair:NA:Chemical denotes Lysine
M_27 163-167 hunflair:NA:Species denotes Rice
M_28 188-192 hunflair:NA:Species denotes rice
M_29 589-593 hunflair:NA:Species denotes rice
M_30 870-874 hunflair:NA:Species denotes rice
M_31 1859-1863 hunflair:NA:Species denotes rice
M_32 1535-1545 pubtator:MESH:D000105:Chemical denotes acetyl-CoA
M_33 1550-1562 pubtator:MESH:C012046:Chemical denotes succinyl-CoA
M_34 163-167 pubtator:4530:Species denotes Rice
M_35 28-34 pubtator:MESH:C114808:Chemical denotes Lysine
M_36 329-335 pubtator:MESH:C114808:Chemical denotes Lysine
M_37 188-192 pubtator:4530:Species denotes rice
M_38 589-593 pubtator:4530:Species denotes rice
M_39 870-874 pubtator:4530:Species denotes rice
M_40 1859-1863 pubtator:4530:Species denotes rice
M_41 629-635 pubtator:MESH:C114808:Chemical denotes lysine
M_42 763-769 pubtator:MESH:C114808:Chemical denotes lysine
M_43 1014-1020 pubtator:MESH:C114808:Chemical denotes lysine

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 193-209 xzyao:4552 denotes seed germination
M_1 193-209 funRiceGene:483, xzyao:3839 denotes seed germination
M_2 193-197 PO:0009010, funRiceGene:180 denotes seed
M_3 594-598 PO:0009010, funRiceGene:180 denotes seed
M_4 1535-1545 hunflair:NA:Chemical denotes acetyl-CoA
M_5 1550-1562 hunflair:NA:Chemical denotes succinyl-CoA
M_6 629-635 hunflair:NA:Chemical denotes lysine
M_7 763-769 hunflair:NA:Chemical denotes lysine
M_8 1014-1020 hunflair:NA:Chemical denotes lysine
M_9 28-34 hunflair:NA:Chemical denotes Lysine
M_10 329-335 hunflair:NA:Chemical denotes Lysine
M_11 1159-1169 hunflair:NA:Chemical denotes amino acid
M_12 188-192 hunflair:NA:Species denotes rice
M_13 589-593 hunflair:NA:Species denotes rice
M_14 870-874 hunflair:NA:Species denotes rice
M_15 1859-1863 hunflair:NA:Species denotes rice
M_16 163-167 hunflair:NA:Species denotes Rice
M_17 1535-1545 pubtator:MESH:D000105:Chemical denotes acetyl-CoA
M_18 1550-1562 pubtator:MESH:C012046:Chemical denotes succinyl-CoA
M_19 188-192 pubtator:4530:Species denotes rice
M_20 589-593 pubtator:4530:Species denotes rice
M_21 870-874 pubtator:4530:Species denotes rice
M_22 1859-1863 pubtator:4530:Species denotes rice
M_23 28-34 pubtator:MESH:C114808:Chemical denotes Lysine
M_24 329-335 pubtator:MESH:C114808:Chemical denotes Lysine
M_25 163-167 pubtator:4530:Species denotes Rice
M_26 629-635 pubtator:MESH:C114808:Chemical denotes lysine
M_27 763-769 pubtator:MESH:C114808:Chemical denotes lysine
M_28 1014-1020 pubtator:MESH:C114808:Chemical denotes lysine

sentences

Id Subject Object Predicate Lexical cue
T1 0-173 Sentence denotes Global Proteome Analyses of Lysine Acetylation and Succinylation Reveal the Widespread Involvement of both Modification in Metabolism in the Embryo of Germinating Rice Seed.
T2 174-328 Sentence denotes Regulation of rice seed germination has been shown to mainly occur at post-transcriptional levels, of which the changes on proteome status is a major one.
T3 329-512 Sentence denotes Lysine acetylation and succinylation are two prevalent protein post-translational modifications (PTMs) involved in multiple biological processes, especially for metabolism regulation.
T4 513-690 Sentence denotes To investigate the potential mechanism controlling metabolism regulation in rice seed germination, we performed the lysine acetylation and succinylation analyses simultaneously.
T5 691-992 Sentence denotes Using high-accuracy nano-LC-MS/MS in combination with the enrichment of lysine acetylated or succinylated peptides from digested embryonic proteins of 24 h after imbibition (HAI) rice seed, a total of 699 acetylated sites from 389 proteins and 665 succinylated sites from 261 proteins were identified.
T6 993-1213 Sentence denotes Among these modified lysine sites, 133 sites on 78 proteins were commonly modified by two PTMs. The overlapped PTM sites were more likely to be in polar acidic/basic amino acid regions and exposed on the protein surface.
T7 1214-1310 Sentence denotes Both of the acetylated and succinylated proteins cover nearly all aspects of cellular functions.
T8 1311-1530 Sentence denotes Ribosome complex and glycolysis/gluconeogenesis-related proteins were significantly enriched in both acetylated and succinylated protein profiles through KEGG enrichment and protein-protein interaction network analyses.
T9 1531-1869 Sentence denotes The acetyl-CoA and succinyl-CoA metabolism-related enzymes were found to be extensively modified by both modifications, implying the functional interaction between the two PTMs. This study provides a rich resource to examine the modulation of the two PTMs on the metabolism pathway and other biological processes in germinating rice seed.
T1 0-173 Sentence denotes Global Proteome Analyses of Lysine Acetylation and Succinylation Reveal the Widespread Involvement of both Modification in Metabolism in the Embryo of Germinating Rice Seed.
T2 174-328 Sentence denotes Regulation of rice seed germination has been shown to mainly occur at post-transcriptional levels, of which the changes on proteome status is a major one.
T3 329-512 Sentence denotes Lysine acetylation and succinylation are two prevalent protein post-translational modifications (PTMs) involved in multiple biological processes, especially for metabolism regulation.
T4 513-690 Sentence denotes To investigate the potential mechanism controlling metabolism regulation in rice seed germination, we performed the lysine acetylation and succinylation analyses simultaneously.
T5 691-992 Sentence denotes Using high-accuracy nano-LC-MS/MS in combination with the enrichment of lysine acetylated or succinylated peptides from digested embryonic proteins of 24 h after imbibition (HAI) rice seed, a total of 699 acetylated sites from 389 proteins and 665 succinylated sites from 261 proteins were identified.
T6 993-1213 Sentence denotes Among these modified lysine sites, 133 sites on 78 proteins were commonly modified by two PTMs. The overlapped PTM sites were more likely to be in polar acidic/basic amino acid regions and exposed on the protein surface.
T7 1214-1310 Sentence denotes Both of the acetylated and succinylated proteins cover nearly all aspects of cellular functions.
T8 1311-1530 Sentence denotes Ribosome complex and glycolysis/gluconeogenesis-related proteins were significantly enriched in both acetylated and succinylated protein profiles through KEGG enrichment and protein-protein interaction network analyses.
T9 1531-1869 Sentence denotes The acetyl-CoA and succinyl-CoA metabolism-related enzymes were found to be extensively modified by both modifications, implying the functional interaction between the two PTMs. This study provides a rich resource to examine the modulation of the two PTMs on the metabolism pathway and other biological processes in germinating rice seed.

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 141-147 http://purl.obolibrary.org/obo/MAT_0000226 denotes Embryo

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 719-721 http://identifiers.org/oryzabase.gene/21590 denotes MS
T2 722-724 http://identifiers.org/oryzabase.gene/21590 denotes MS
T96232 719-721 http://identifiers.org/rapdb.locus/Os04g0486950 denotes MS
T9552 722-724 http://identifiers.org/rapdb.locus/Os04g0486950 denotes MS

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 629-635 hunflair:NA:Chemical denotes lysine
M_1 763-769 hunflair:NA:Chemical denotes lysine
M_2 1014-1020 hunflair:NA:Chemical denotes lysine
M_3 1550-1562 hunflair:NA:Chemical denotes succinyl-CoA
M_4 163-167 hunflair:NA:Species denotes Rice
M_5 1159-1169 hunflair:NA:Chemical denotes amino acid
M_6 28-34 hunflair:NA:Chemical denotes Lysine
M_7 329-335 hunflair:NA:Chemical denotes Lysine
M_8 188-192 hunflair:NA:Species denotes rice
M_9 589-593 hunflair:NA:Species denotes rice
M_10 870-874 hunflair:NA:Species denotes rice
M_11 1859-1863 hunflair:NA:Species denotes rice
M_12 1535-1545 hunflair:NA:Chemical denotes acetyl-CoA

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 719-721 http://identifiers.org/oryzabase.gene/21590 denotes MS
T2 722-724 http://identifiers.org/oryzabase.gene/21590 denotes MS
T82143 719-721 http://identifiers.org/ricegap/LOC_Os04g40990 denotes MS
T53057 722-724 http://identifiers.org/ricegap/LOC_Os04g40990 denotes MS
T32378 719-721 http://identifiers.org/rapdb.locus/Os04g0486950 denotes MS
T43996 722-724 http://identifiers.org/rapdb.locus/Os04g0486950 denotes MS
T98025 719-721 http://identifiers.org/uniprot/A2XUV1 denotes MS
T22662 722-724 http://identifiers.org/uniprot/A2XUV1 denotes MS
M_0 629-635 hunflair:NA:Chemical denotes lysine
M_1 763-769 hunflair:NA:Chemical denotes lysine
M_2 1014-1020 hunflair:NA:Chemical denotes lysine
M_3 1550-1562 hunflair:NA:Chemical denotes succinyl-CoA
M_4 163-167 hunflair:NA:Species denotes Rice
M_5 1159-1169 hunflair:NA:Chemical denotes amino acid
M_6 28-34 hunflair:NA:Chemical denotes Lysine
M_7 329-335 hunflair:NA:Chemical denotes Lysine
M_8 188-192 hunflair:NA:Species denotes rice
M_9 589-593 hunflair:NA:Species denotes rice
M_10 870-874 hunflair:NA:Species denotes rice
M_11 1859-1863 hunflair:NA:Species denotes rice
M_12 1535-1545 hunflair:NA:Chemical denotes acetyl-CoA

OryzaGP

Id Subject Object Predicate Lexical cue
T1 0-0 gene denotes

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 865-868 Disease denotes HAI http://purl.obolibrary.org/obo/MONDO_0043544

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 141-147 Body_part denotes Embryo http://purl.obolibrary.org/obo/MAT_0000226

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-173 Sentence denotes Global Proteome Analyses of Lysine Acetylation and Succinylation Reveal the Widespread Involvement of both Modification in Metabolism in the Embryo of Germinating Rice Seed.
T2 174-328 Sentence denotes Regulation of rice seed germination has been shown to mainly occur at post-transcriptional levels, of which the changes on proteome status is a major one.
T3 329-512 Sentence denotes Lysine acetylation and succinylation are two prevalent protein post-translational modifications (PTMs) involved in multiple biological processes, especially for metabolism regulation.
T4 513-690 Sentence denotes To investigate the potential mechanism controlling metabolism regulation in rice seed germination, we performed the lysine acetylation and succinylation analyses simultaneously.
T5 691-992 Sentence denotes Using high-accuracy nano-LC-MS/MS in combination with the enrichment of lysine acetylated or succinylated peptides from digested embryonic proteins of 24 h after imbibition (HAI) rice seed, a total of 699 acetylated sites from 389 proteins and 665 succinylated sites from 261 proteins were identified.
T6 993-1213 Sentence denotes Among these modified lysine sites, 133 sites on 78 proteins were commonly modified by two PTMs. The overlapped PTM sites were more likely to be in polar acidic/basic amino acid regions and exposed on the protein surface.
T7 1214-1310 Sentence denotes Both of the acetylated and succinylated proteins cover nearly all aspects of cellular functions.
T8 1311-1530 Sentence denotes Ribosome complex and glycolysis/gluconeogenesis-related proteins were significantly enriched in both acetylated and succinylated protein profiles through KEGG enrichment and protein-protein interaction network analyses.
T9 1531-1869 Sentence denotes The acetyl-CoA and succinyl-CoA metabolism-related enzymes were found to be extensively modified by both modifications, implying the functional interaction between the two PTMs. This study provides a rich resource to examine the modulation of the two PTMs on the metabolism pathway and other biological processes in germinating rice seed.

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 163-167 OrganismTaxon denotes Rice 4530
T2 188-192 OrganismTaxon denotes rice 4530
T3 589-593 OrganismTaxon denotes rice 4530
T4 870-874 OrganismTaxon denotes rice 4530
T5 1859-1863 OrganismTaxon denotes rice 4530

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 141-147 Body_part denotes Embryo http://purl.obolibrary.org/obo/UBERON_0000922
T2 1311-1319 Body_part denotes Ribosome http://purl.obolibrary.org/obo/GO_0005840