PubMed:26747563
Annnotations
OryzaGP_2021_v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 304-307 | http://identifiers.org/oryzabase.gene/2454 | denotes | gel |
| T2 | 1188-1196 | http://identifiers.org/oryzabase.gene/3111 | denotes | OsDREB1A |
| T3 | 1504-1507 | http://identifiers.org/oryzabase.gene/12401 | denotes | MAP |
| T4 | 1518-1524 | http://identifiers.org/oryzabase.gene/7297 | denotes | OsMPK6 |
| T5 | 1518-1524 | http://identifiers.org/oryzabase.gene/6221 | denotes | OsMPK6 |
| T6 | 1518-1524 | http://identifiers.org/oryzabase.gene/10233 | denotes | OsMPK6 |
| T7 | 1530-1536 | http://identifiers.org/oryzabase.gene/9365 | denotes | OsSIZ1 |
| T8 | 1717-1723 | http://identifiers.org/oryzabase.gene/7297 | denotes | OsMPK6 |
| T9 | 1717-1723 | http://identifiers.org/oryzabase.gene/6221 | denotes | OsMPK6 |
| T10 | 1717-1723 | http://identifiers.org/oryzabase.gene/10233 | denotes | OsMPK6 |
| T11 | 1725-1731 | http://identifiers.org/oryzabase.gene/9365 | denotes | OsSIZ1 |
| T12643 | 1188-1196 | http://identifiers.org/rapdb.locus/Os09g0522200 | denotes | OsDREB1A |
| T1417 | 1504-1507 | http://identifiers.org/rapdb.locus/Os08g0518100 | denotes | MAP |
| T29881 | 1518-1524 | http://identifiers.org/rapdb.locus/Os10g0533600 | denotes | OsMPK6 |
| T33295 | 1518-1524 | http://identifiers.org/rapdb.locus/Os06g0154500 | denotes | OsMPK6 |
| T43517 | 1530-1536 | http://identifiers.org/rapdb.locus/Os05g0125000 | denotes | OsSIZ1 |
| T75211 | 1717-1723 | http://identifiers.org/rapdb.locus/Os10g0533600 | denotes | OsMPK6 |
| T20923 | 1717-1723 | http://identifiers.org/rapdb.locus/Os06g0154500 | denotes | OsMPK6 |
| T85307 | 1725-1731 | http://identifiers.org/rapdb.locus/Os05g0125000 | denotes | OsSIZ1 |
pqqtest_sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 1640-1654 | cand:funRiceGene:266-BR signaling | denotes | cold signaling |
| M_1 | 1640-1654 | cand:funRiceGene:53-JA signaling | denotes | cold signaling |
| M_2 | 1640-1654 | cand:funRiceGene:34-Brassinosteroid Signaling | denotes | cold signaling |
| M_3 | 1640-1654 | cand:funRiceGene:121-chitin elicitor signaling pathway | denotes | cold signaling |
| M_4 | 1640-1654 | cand:funRiceGene:326-cold stress | denotes | cold signaling |
| M_5 | 1640-1654 | cand:funRiceGene:145-cold tolerance | denotes | cold signaling |
| M_6 | 1640-1654 | cand:funRiceGene:56-JA signalling | denotes | cold signaling |
| M_7 | 1640-1654 | cand:funRiceGene:519-chitin signaling | denotes | cold signaling |
| M_8 | 1640-1654 | cand:funRiceGene:313-Pi signaling | denotes | cold signaling |
| M_9 | 0-17 | cand:PECO:0007255-laboratory study | denotes | Comparative Study |
| M_10 | 0-17 | cand:PECO:0007231-study type | denotes | Comparative Study |
| M_11 | 0-17 | cand:PECO:0007280-unknown study type | denotes | Comparative Study |
| M_12 | 0-17 | cand:PECO:0007256-field study | denotes | Comparative Study |
| M_13 | 0-17 | cand:TO:0000334-hybrid evaluation | denotes | Comparative Study |
| M_14 | 0-17 | cand:WTO:0000389-Common Bunt | denotes | Comparative Study |
| M_15 | 0-17 | cand:PO:0020097-generative cell | denotes | Comparative Study |
| M_16 | 0-17 | cand:PO:0000058-vegetative bud | denotes | Comparative Study |
| M_17 | 0-17 | cand:funRiceGene:125-oxidative stress | denotes | Comparative Study |
| M_18 | 0-17 | cand:PO:0000023-casparian strip | denotes | Comparative Study |
| M_19 | 1725-1731 | GeneID:RAPID:Os05g0125000MSUID:LOC_Os05g03430 | denotes | OsSIZ1 |
| M_20 | 124-141 | GeneID:NA | denotes | Phospholipase Dα1 |
| T93853 | 253-267 | xzyao:29694 | denotes | cold responses |
| T1112 | 155-171 | xzyao:41531 | denotes | Cold Acclimation |
| T55640 | 855-871 | xzyao:41531 | denotes | cold acclimation |
| T65618 | 1064-1085 | xzyao:35061 | denotes | transcription factors |
| T30571 | 798-809 | xzyao:23828 | denotes | rice plants |
| T48439 | 1508-1514 | funRiceGene:512 | denotes | kinase |
| T77764 | 1508-1514 | funRiceGene:139 | denotes | kinase |
| T71206 | 54-100 | xzyao:29533 | denotes | Two-Dimensional Difference Gel Electrophoresis |
| T18115 | 277-323 | xzyao:29533 | denotes | two-dimensional difference gel electrophoresis |
| T34349 | 1003-1033 | xzyao:12111 | denotes | dehydration-responsive element |
| T47401 | 172-189 | xzyao:41825 | denotes | Signaling Pathway |
| T73202 | 828-843 | funRiceGene:144, xzyao:17175 | denotes | chilling stress |
| T80020 | 1479-1493 | xzyao:8762 | denotes | cold signaling |
| T15390 | 1640-1654 | xzyao:8762 | denotes | cold signaling |
| T27429 | 1401-1418 | xzyao:27752 | denotes | phosphatidic acid |
| T74746 | 0-17 | xzyao:30233 | denotes | Comparative Study |
| T43239 | 1294-1321 | xzyao:31085 | denotes | signal transduction pathway |
| T39503 | 81-100 | xzyao:43081 | denotes | Gel Electrophoresis |
| T18311 | 304-323 | xzyao:43081 | denotes | gel electrophoresis |
| T34493 | 27-31 | WTO:0000129, funRiceGene:509 | denotes | Cold |
| T96355 | 155-159 | WTO:0000129, funRiceGene:509 | denotes | Cold |
| M_21 | 253-257 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_22 | 361-365 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_23 | 530-534 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_24 | 715-719 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_25 | 855-859 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_26 | 919-923 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_27 | 978-982 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_28 | 1289-1293 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_29 | 1479-1483 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_30 | 1640-1644 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_31 | 1294-1313 | funRiceGene:486, xzyao:13033 | denotes | signal transduction |
| M_32 | 837-843 | funRiceGene:361 | denotes | stress |
| M_33 | 1289-1300 | xzyao:24999 | denotes | cold signal |
| M_34 | 325-333 | xzyao:21745 | denotes | 2-D DIGE |
| M_35 | 393-402 | funRiceGene:507 | denotes | seedlings |
| M_36 | 1289-1321 | xzyao:25201 | denotes | cold signal transduction pathway |
| M_37 | 882-900 | xzyao:7910 | denotes | freezing tolerance |
| M_38 | 1203-1229 | xzyao:20813 | denotes | transcriptional regulation |
| M_39 | 891-900 | funRiceGene:214 | denotes | tolerance |
| M_40 | 530-544 | xzyao:37256 | denotes | cold treatment |
| M_41 | 715-729 | xzyao:37256 | denotes | cold treatment |
| M_42 | 828-836 | funRiceGene:421 | denotes | chilling |
| M_43 | 1064-1085 | hunflair:NA:Gene | denotes | transcription factors |
| M_44 | 654-661 | hunflair:NA:Gene | denotes | OsPLDα1 |
| M_45 | 1331-1338 | hunflair:NA:Gene | denotes | OsPLDα1 |
| M_46 | 1600-1607 | hunflair:NA:Gene | denotes | OsPLDα1 |
| M_47 | 1188-1196 | hunflair:NA:Gene | denotes | OsDREB1A |
| M_48 | 1518-1524 | hunflair:NA:Gene | denotes | OsMPK6 |
| M_49 | 1717-1723 | hunflair:NA:Gene | denotes | OsMPK6 |
| M_50 | 1504-1516 | hunflair:NA:Gene | denotes | MAP kinase 6 |
| M_51 | 634-652 | hunflair:NA:Gene | denotes | phospholipase D α1 |
| M_52 | 193-197 | hunflair:NA:Species | denotes | Rice |
| M_53 | 1350-1369 | hunflair:NA:Chemical | denotes | phosphatidylcholine |
| M_54 | 1401-1418 | hunflair:NA:Chemical | denotes | phosphatidic acid |
| M_55 | 271-275 | hunflair:NA:Species | denotes | rice |
| M_56 | 388-392 | hunflair:NA:Species | denotes | rice |
| M_57 | 798-802 | hunflair:NA:Species | denotes | rice |
| M_58 | 1325-1329 | hunflair:NA:Species | denotes | rice |
| M_59 | 1474-1478 | hunflair:NA:Species | denotes | rice |
| M_60 | 1658-1662 | hunflair:NA:Species | denotes | rice |
| M_61 | 1530-1536 | hunflair:NA:Gene | denotes | OsSIZ1 |
| M_62 | 1725-1731 | hunflair:NA:Gene | denotes | OsSIZ1 |
| M_63 | 124-141 | hunflair:NA:Gene | denotes | Phospholipase Dα1 |
| M_64 | 1420-1422 | hunflair:NA:Gene | denotes | PA |
| M_65 | 1555-1557 | hunflair:NA:Gene | denotes | PA |
| M_66 | 1676-1678 | hunflair:NA:Gene | denotes | PA |
| M_67 | 1752-1754 | hunflair:NA:Gene | denotes | PA |
| M_68 | 1401-1418 | pubtator:MESH:D010712:Chemical | denotes | phosphatidic acid |
| M_69 | 1350-1369 | pubtator:MESH:D010713:Chemical | denotes | phosphatidylcholine |
| M_70 | 271-275 | pubtator:4530:Species | denotes | rice |
| M_71 | 388-392 | pubtator:4530:Species | denotes | rice |
| M_72 | 798-802 | pubtator:4530:Species | denotes | rice |
| M_73 | 1325-1329 | pubtator:4530:Species | denotes | rice |
| M_74 | 1474-1478 | pubtator:4530:Species | denotes | rice |
| M_75 | 1658-1662 | pubtator:4530:Species | denotes | rice |
| M_76 | 193-197 | pubtator:4530:Species | denotes | Rice |
21k_plant_trait_mention
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 837-843 | funRiceGene:361 | denotes | stress |
| M_1 | 1294-1313 | funRiceGene:486, xzyao:14470 | denotes | signal transduction |
| M_2 | 253-267 | xzyao:11447 | denotes | cold responses |
| M_3 | 828-836 | funRiceGene:421 | denotes | chilling |
| M_4 | 828-843 | funRiceGene:144, xzyao:10765 | denotes | chilling stress |
| M_5 | 625-647 | xzyao:11698 | denotes | cellular phospholipase |
| M_6 | 1508-1514 | funRiceGene:512 | denotes | kinase |
| M_7 | 253-257 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_8 | 530-534 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_9 | 715-719 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_10 | 855-859 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_11 | 1289-1293 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_12 | 1479-1483 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_13 | 1640-1644 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_14 | 530-544 | xzyao:1335 | denotes | cold treatment |
| M_15 | 217-232 | xzyao:9073 | denotes | early signaling |
| M_16 | 1479-1493 | xzyao:2024 | denotes | cold signaling |
| M_17 | 1640-1654 | xzyao:2024 | denotes | cold signaling |
| M_18 | 1508-1514 | funRiceGene:139 | denotes | kinase |
| M_19 | 1420-1422 | hunflair:NA:Gene | denotes | PA |
| M_20 | 1555-1557 | hunflair:NA:Gene | denotes | PA |
| M_21 | 1676-1678 | hunflair:NA:Gene | denotes | PA |
| M_22 | 1752-1754 | hunflair:NA:Gene | denotes | PA |
| M_23 | 634-652 | hunflair:NA:Gene | denotes | phospholipase D α1 |
| M_24 | 1064-1085 | hunflair:NA:Gene | denotes | transcription factors |
| M_25 | 1401-1418 | hunflair:NA:Chemical | denotes | phosphatidic acid |
| M_26 | 271-275 | hunflair:NA:Species | denotes | rice |
| M_27 | 388-392 | hunflair:NA:Species | denotes | rice |
| M_28 | 798-802 | hunflair:NA:Species | denotes | rice |
| M_29 | 1325-1329 | hunflair:NA:Species | denotes | rice |
| M_30 | 1474-1478 | hunflair:NA:Species | denotes | rice |
| M_31 | 1658-1662 | hunflair:NA:Species | denotes | rice |
| M_32 | 1350-1369 | hunflair:NA:Chemical | denotes | phosphatidylcholine |
| M_33 | 654-661 | hunflair:NA:Gene | denotes | OsPLDα1 |
| M_34 | 1331-1338 | hunflair:NA:Gene | denotes | OsPLDα1 |
| M_35 | 1600-1607 | hunflair:NA:Gene | denotes | OsPLDα1 |
| M_36 | 124-141 | hunflair:NA:Gene | denotes | Phospholipase Dα1 |
| M_37 | 1518-1524 | hunflair:NA:Gene | denotes | OsMPK6 |
| M_38 | 1717-1723 | hunflair:NA:Gene | denotes | OsMPK6 |
| M_39 | 1530-1536 | hunflair:NA:Gene | denotes | OsSIZ1 |
| M_40 | 1725-1731 | hunflair:NA:Gene | denotes | OsSIZ1 |
| M_41 | 1504-1516 | hunflair:NA:Gene | denotes | MAP kinase 6 |
| M_42 | 193-197 | hunflair:NA:Species | denotes | Rice |
| M_43 | 1188-1196 | hunflair:NA:Gene | denotes | OsDREB1A |
| M_44 | 1401-1418 | pubtator:MESH:D010712:Chemical | denotes | phosphatidic acid |
| M_45 | 1350-1369 | pubtator:MESH:D010713:Chemical | denotes | phosphatidylcholine |
| M_46 | 193-197 | pubtator:4530:Species | denotes | Rice |
| M_47 | 271-275 | pubtator:4530:Species | denotes | rice |
| M_48 | 388-392 | pubtator:4530:Species | denotes | rice |
| M_49 | 798-802 | pubtator:4530:Species | denotes | rice |
| M_50 | 1325-1329 | pubtator:4530:Species | denotes | rice |
| M_51 | 1474-1478 | pubtator:4530:Species | denotes | rice |
| M_52 | 1658-1662 | pubtator:4530:Species | denotes | rice |
OryzaGP_2022
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 335-336 | http://identifiers.org/oryzabase.gene/11216 | denotes | 1 |
| T2 | 703-704 | http://identifiers.org/oryzabase.gene/11216 | denotes | 1 |
| T3 | 1042-1043 | http://identifiers.org/oryzabase.gene/11216 | denotes | 1 |
| T4 | 1508-1516 | http://identifiers.org/oryzabase.gene/23628 | denotes | kinase 6 |
OryzaGP_2021_FLAIR
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 654-661 | hunflair:NA:Gene | denotes | OsPLDα1 |
| M_1 | 1331-1338 | hunflair:NA:Gene | denotes | OsPLDα1 |
| M_2 | 1600-1607 | hunflair:NA:Gene | denotes | OsPLDα1 |
| M_3 | 1064-1085 | hunflair:NA:Gene | denotes | transcription factors |
| M_4 | 634-652 | hunflair:NA:Gene | denotes | phospholipase D α1 |
| M_5 | 1401-1418 | hunflair:NA:Chemical | denotes | phosphatidic acid |
| M_6 | 193-197 | hunflair:NA:Species | denotes | Rice |
| M_7 | 1350-1369 | hunflair:NA:Chemical | denotes | phosphatidylcholine |
| M_8 | 1188-1196 | hunflair:NA:Gene | denotes | OsDREB1A |
| M_9 | 271-275 | hunflair:NA:Species | denotes | rice |
| M_10 | 388-392 | hunflair:NA:Species | denotes | rice |
| M_11 | 798-802 | hunflair:NA:Species | denotes | rice |
| M_12 | 1325-1329 | hunflair:NA:Species | denotes | rice |
| M_13 | 1474-1478 | hunflair:NA:Species | denotes | rice |
| M_14 | 1658-1662 | hunflair:NA:Species | denotes | rice |
| M_15 | 1518-1524 | hunflair:NA:Gene | denotes | OsMPK6 |
| M_16 | 1717-1723 | hunflair:NA:Gene | denotes | OsMPK6 |
| M_17 | 1504-1516 | hunflair:NA:Gene | denotes | MAP kinase 6 |
| M_18 | 1420-1422 | hunflair:NA:Gene | denotes | PA |
| M_19 | 1555-1557 | hunflair:NA:Gene | denotes | PA |
| M_20 | 1676-1678 | hunflair:NA:Gene | denotes | PA |
| M_21 | 1752-1754 | hunflair:NA:Gene | denotes | PA |
| M_22 | 1530-1536 | hunflair:NA:Gene | denotes | OsSIZ1 |
| M_23 | 1725-1731 | hunflair:NA:Gene | denotes | OsSIZ1 |
| M_24 | 124-141 | hunflair:NA:Gene | denotes | Phospholipase Dα1 |
OryzaGP_2021
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 304-307 | http://identifiers.org/oryzabase.gene/2454 | denotes | gel |
| T2 | 1188-1196 | http://identifiers.org/oryzabase.gene/3111 | denotes | OsDREB1A |
| T3 | 1504-1516 | http://identifiers.org/oryzabase.gene/6221 | denotes | MAP kinase 6 |
| T4 | 1518-1524 | http://identifiers.org/oryzabase.gene/7297 | denotes | OsMPK6 |
| T5 | 1518-1524 | http://identifiers.org/oryzabase.gene/6221 | denotes | OsMPK6 |
| T6 | 1518-1524 | http://identifiers.org/oryzabase.gene/10233 | denotes | OsMPK6 |
| T7 | 1530-1536 | http://identifiers.org/oryzabase.gene/9365 | denotes | OsSIZ1 |
| T8 | 1717-1723 | http://identifiers.org/oryzabase.gene/7297 | denotes | OsMPK6 |
| T9 | 1717-1723 | http://identifiers.org/oryzabase.gene/6221 | denotes | OsMPK6 |
| T10 | 1717-1723 | http://identifiers.org/oryzabase.gene/10233 | denotes | OsMPK6 |
| T11 | 1725-1731 | http://identifiers.org/oryzabase.gene/9365 | denotes | OsSIZ1 |
| T19918 | 27-50 | http://identifiers.org/ricegap/LOC_Os05g39250 | denotes | Cold-Regulated Proteins |
| T28894 | 361-384 | http://identifiers.org/ricegap/LOC_Os05g39250 | denotes | cold-regulated proteins |
| T93198 | 1188-1196 | http://identifiers.org/ricegap/LOC_Os09g35030 | denotes | OsDREB1A |
| T27644 | 1504-1516 | http://identifiers.org/ricegap/LOC_Os06g06090 | denotes | MAP kinase 6 |
| T25973 | 1518-1524 | http://identifiers.org/ricegap/LOC_Os10g38950 | denotes | OsMPK6 |
| T24564 | 1518-1524 | http://identifiers.org/ricegap/LOC_Os06g06090 | denotes | OsMPK6 |
| T86527 | 1530-1536 | http://identifiers.org/ricegap/LOC_Os05g03430 | denotes | OsSIZ1 |
| T88220 | 1717-1723 | http://identifiers.org/ricegap/LOC_Os10g38950 | denotes | OsMPK6 |
| T716 | 1717-1723 | http://identifiers.org/ricegap/LOC_Os06g06090 | denotes | OsMPK6 |
| T42050 | 1725-1731 | http://identifiers.org/ricegap/LOC_Os05g03430 | denotes | OsSIZ1 |
| T11888 | 1755-1771 | http://identifiers.org/ricegap/LOC_Os02g02410 | denotes | binding proteins |
| T75912 | 27-50 | http://identifiers.org/rapdb.locus/Os05g0468800 | denotes | Cold-Regulated Proteins |
| T35998 | 361-384 | http://identifiers.org/rapdb.locus/Os05g0468800 | denotes | cold-regulated proteins |
| T19779 | 1188-1196 | http://identifiers.org/rapdb.locus/Os09g0522200 | denotes | OsDREB1A |
| T24140 | 1504-1516 | http://identifiers.org/rapdb.locus/Os06g0154500 | denotes | MAP kinase 6 |
| T39478 | 1518-1524 | http://identifiers.org/rapdb.locus/Os10g0533600 | denotes | OsMPK6 |
| T31998 | 1518-1524 | http://identifiers.org/rapdb.locus/Os06g0154500 | denotes | OsMPK6 |
| T73183 | 1530-1536 | http://identifiers.org/rapdb.locus/Os05g0125000 | denotes | OsSIZ1 |
| T15136 | 1717-1723 | http://identifiers.org/rapdb.locus/Os10g0533600 | denotes | OsMPK6 |
| T21369 | 1717-1723 | http://identifiers.org/rapdb.locus/Os06g0154500 | denotes | OsMPK6 |
| T35012 | 1725-1731 | http://identifiers.org/rapdb.locus/Os05g0125000 | denotes | OsSIZ1 |
| T58387 | 1755-1771 | http://identifiers.org/rapdb.locus/Os02g0115900 | denotes | binding proteins |
| T84958 | 1188-1196 | http://identifiers.org/uniprot/Q64MA1 | denotes | OsDREB1A |
| T97894 | 1504-1516 | http://identifiers.org/uniprot/Q84UI5 | denotes | MAP kinase 6 |
| T22933 | 1518-1524 | http://identifiers.org/uniprot/Q84UI5 | denotes | OsMPK6 |
| T54215 | 1518-1524 | http://identifiers.org/uniprot/Q336X9 | denotes | OsMPK6 |
| T96141 | 1530-1536 | http://identifiers.org/uniprot/Q6L4L4 | denotes | OsSIZ1 |
| T10815 | 1717-1723 | http://identifiers.org/uniprot/Q84UI5 | denotes | OsMPK6 |
| T20921 | 1717-1723 | http://identifiers.org/uniprot/Q336X9 | denotes | OsMPK6 |
| T62728 | 1725-1731 | http://identifiers.org/uniprot/Q6L4L4 | denotes | OsSIZ1 |
| M_0 | 654-661 | hunflair:NA:Gene | denotes | OsPLDα1 |
| M_1 | 1331-1338 | hunflair:NA:Gene | denotes | OsPLDα1 |
| M_2 | 1600-1607 | hunflair:NA:Gene | denotes | OsPLDα1 |
| M_3 | 1064-1085 | hunflair:NA:Gene | denotes | transcription factors |
| M_4 | 634-652 | hunflair:NA:Gene | denotes | phospholipase D α1 |
| M_5 | 1401-1418 | hunflair:NA:Chemical | denotes | phosphatidic acid |
| M_6 | 193-197 | hunflair:NA:Species | denotes | Rice |
| M_7 | 1350-1369 | hunflair:NA:Chemical | denotes | phosphatidylcholine |
| M_8 | 1188-1196 | hunflair:NA:Gene | denotes | OsDREB1A |
| M_9 | 271-275 | hunflair:NA:Species | denotes | rice |
| M_10 | 388-392 | hunflair:NA:Species | denotes | rice |
| M_11 | 798-802 | hunflair:NA:Species | denotes | rice |
| M_12 | 1325-1329 | hunflair:NA:Species | denotes | rice |
| M_13 | 1474-1478 | hunflair:NA:Species | denotes | rice |
| M_14 | 1658-1662 | hunflair:NA:Species | denotes | rice |
| M_15 | 1518-1524 | hunflair:NA:Gene | denotes | OsMPK6 |
| M_16 | 1717-1723 | hunflair:NA:Gene | denotes | OsMPK6 |
| M_17 | 1504-1516 | hunflair:NA:Gene | denotes | MAP kinase 6 |
| M_18 | 1420-1422 | hunflair:NA:Gene | denotes | PA |
| M_19 | 1555-1557 | hunflair:NA:Gene | denotes | PA |
| M_20 | 1676-1678 | hunflair:NA:Gene | denotes | PA |
| M_21 | 1752-1754 | hunflair:NA:Gene | denotes | PA |
| M_22 | 1530-1536 | hunflair:NA:Gene | denotes | OsSIZ1 |
| M_23 | 1725-1731 | hunflair:NA:Gene | denotes | OsSIZ1 |
| M_24 | 124-141 | hunflair:NA:Gene | denotes | Phospholipase Dα1 |
OryzaGP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1045-1052 | gene | denotes | OsDREB1 |
| T2 | 1188-1196 | gene | denotes | OsDREB1A |
| T3 | 1331-1338 | gene | denotes | OsPLDα1 |
| T4 | 1518-1524 | gene | denotes | OsMPK6 |
| T5 | 1530-1536 | gene | denotes | OsSIZ1 |
HP-phenotype
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 1003-1014 | Phenotype | denotes | dehydration | HP:0001944 |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-198 | Sentence | denotes | Comparative Study of Early Cold-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Reveals a Key Role for Phospholipase Dα1 in Mediating Cold Acclimation Signaling Pathway in Rice. |
| T2 | 199-403 | Sentence | denotes | To understand the early signaling steps that regulate cold responses in rice, two-dimensional difference gel electrophoresis (2-D DIGE)(1)was used to study early cold-regulated proteins in rice seedlings. |
| T3 | 404-561 | Sentence | denotes | Using mass spectrometry, 32 spots, which represent 26 unique proteins that showed an altered expression level within 5 min of cold treatment were identified. |
| T4 | 562-730 | Sentence | denotes | Among these proteins, Western blot analyses confirmed that the cellular phospholipase D α1 (OsPLDα1) protein level was increased as early as 1 min after cold treatment. |
| T5 | 731-901 | Sentence | denotes | Genetic studies showed that reducing the expression ofOsPLDα1makes rice plants more sensitive to chilling stress as well as cold acclimation increased freezing tolerance. |
| T6 | 902-1119 | Sentence | denotes | Correspondingly, cold-regulated proteomic changes and the expression of the cold-responsive C repeat/dehydration-responsive element binding 1 (OsDREB1) family of transcription factors were inhibited in thepldα1mutant. |
| T7 | 1120-1197 | Sentence | denotes | We also found that the expression ofOsPLDα1is directly regulated by OsDREB1A. |
| T8 | 1198-1330 | Sentence | denotes | This transcriptional regulation ofOsPLDα1could provide positive feedback regulation of the cold signal transduction pathway in rice. |
| T9 | 1331-1424 | Sentence | denotes | OsPLDα1 hydrolyzes phosphatidylcholine to produce the signal molecule phosphatidic acid (PA). |
| T10 | 1425-1558 | Sentence | denotes | By lipid-overlay assay, we demonstrated that the rice cold signaling proteins, MAP kinase 6 (OsMPK6) and OsSIZ1, bind directly to PA. |
| T11 | 1559-1772 | Sentence | denotes | Taken together, our results suggest that OsPLDα1 plays a key role in transducing cold signaling in rice by producing PA and regulatingOsDREB1s' expression by OsMPK6, OsSIZ1, and possibly other PA-binding proteins. |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 193-197 | OrganismTaxon | denotes | Rice | 4530 |
| T2 | 271-275 | OrganismTaxon | denotes | rice | 4530 |
| T3 | 388-392 | OrganismTaxon | denotes | rice | 4530 |
| T4 | 798-802 | OrganismTaxon | denotes | rice | 4530 |
| T5 | 1325-1329 | OrganismTaxon | denotes | rice | 4530 |
| T6 | 1474-1478 | OrganismTaxon | denotes | rice | 4530 |
| T7 | 1658-1662 | OrganismTaxon | denotes | rice | 4530 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 432-437 | Body_part | denotes | spots | http://purl.obolibrary.org/obo/UBERON_2002283 |