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PubMed:26747563 JSONTXT

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OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 304-307 http://identifiers.org/oryzabase.gene/2454 denotes gel
T2 1188-1196 http://identifiers.org/oryzabase.gene/3111 denotes OsDREB1A
T3 1504-1507 http://identifiers.org/oryzabase.gene/12401 denotes MAP
T4 1518-1524 http://identifiers.org/oryzabase.gene/7297 denotes OsMPK6
T5 1518-1524 http://identifiers.org/oryzabase.gene/6221 denotes OsMPK6
T6 1518-1524 http://identifiers.org/oryzabase.gene/10233 denotes OsMPK6
T7 1530-1536 http://identifiers.org/oryzabase.gene/9365 denotes OsSIZ1
T8 1717-1723 http://identifiers.org/oryzabase.gene/7297 denotes OsMPK6
T9 1717-1723 http://identifiers.org/oryzabase.gene/6221 denotes OsMPK6
T10 1717-1723 http://identifiers.org/oryzabase.gene/10233 denotes OsMPK6
T11 1725-1731 http://identifiers.org/oryzabase.gene/9365 denotes OsSIZ1
T12643 1188-1196 http://identifiers.org/rapdb.locus/Os09g0522200 denotes OsDREB1A
T1417 1504-1507 http://identifiers.org/rapdb.locus/Os08g0518100 denotes MAP
T29881 1518-1524 http://identifiers.org/rapdb.locus/Os10g0533600 denotes OsMPK6
T33295 1518-1524 http://identifiers.org/rapdb.locus/Os06g0154500 denotes OsMPK6
T43517 1530-1536 http://identifiers.org/rapdb.locus/Os05g0125000 denotes OsSIZ1
T75211 1717-1723 http://identifiers.org/rapdb.locus/Os10g0533600 denotes OsMPK6
T20923 1717-1723 http://identifiers.org/rapdb.locus/Os06g0154500 denotes OsMPK6
T85307 1725-1731 http://identifiers.org/rapdb.locus/Os05g0125000 denotes OsSIZ1

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 1640-1654 cand:funRiceGene:266-BR signaling denotes cold signaling
M_1 1640-1654 cand:funRiceGene:53-JA signaling denotes cold signaling
M_2 1640-1654 cand:funRiceGene:34-Brassinosteroid Signaling denotes cold signaling
M_3 1640-1654 cand:funRiceGene:121-chitin elicitor signaling pathway denotes cold signaling
M_4 1640-1654 cand:funRiceGene:326-cold stress denotes cold signaling
M_5 1640-1654 cand:funRiceGene:145-cold tolerance denotes cold signaling
M_6 1640-1654 cand:funRiceGene:56-JA signalling denotes cold signaling
M_7 1640-1654 cand:funRiceGene:519-chitin signaling denotes cold signaling
M_8 1640-1654 cand:funRiceGene:313-Pi signaling denotes cold signaling
M_9 0-17 cand:PECO:0007255-laboratory study denotes Comparative Study
M_10 0-17 cand:PECO:0007231-study type denotes Comparative Study
M_11 0-17 cand:PECO:0007280-unknown study type denotes Comparative Study
M_12 0-17 cand:PECO:0007256-field study denotes Comparative Study
M_13 0-17 cand:TO:0000334-hybrid evaluation denotes Comparative Study
M_14 0-17 cand:WTO:0000389-Common Bunt denotes Comparative Study
M_15 0-17 cand:PO:0020097-generative cell denotes Comparative Study
M_16 0-17 cand:PO:0000058-vegetative bud denotes Comparative Study
M_17 0-17 cand:funRiceGene:125-oxidative stress denotes Comparative Study
M_18 0-17 cand:PO:0000023-casparian strip denotes Comparative Study
M_19 1725-1731 GeneID:RAPID:Os05g0125000MSUID:LOC_Os05g03430 denotes OsSIZ1
M_20 124-141 GeneID:NA denotes Phospholipase Dα1
T93853 253-267 xzyao:29694 denotes cold responses
T1112 155-171 xzyao:41531 denotes Cold Acclimation
T55640 855-871 xzyao:41531 denotes cold acclimation
T65618 1064-1085 xzyao:35061 denotes transcription factors
T30571 798-809 xzyao:23828 denotes rice plants
T48439 1508-1514 funRiceGene:512 denotes kinase
T77764 1508-1514 funRiceGene:139 denotes kinase
T71206 54-100 xzyao:29533 denotes Two-Dimensional Difference Gel Electrophoresis
T18115 277-323 xzyao:29533 denotes two-dimensional difference gel electrophoresis
T34349 1003-1033 xzyao:12111 denotes dehydration-responsive element
T47401 172-189 xzyao:41825 denotes Signaling Pathway
T73202 828-843 funRiceGene:144, xzyao:17175 denotes chilling stress
T80020 1479-1493 xzyao:8762 denotes cold signaling
T15390 1640-1654 xzyao:8762 denotes cold signaling
T27429 1401-1418 xzyao:27752 denotes phosphatidic acid
T74746 0-17 xzyao:30233 denotes Comparative Study
T43239 1294-1321 xzyao:31085 denotes signal transduction pathway
T39503 81-100 xzyao:43081 denotes Gel Electrophoresis
T18311 304-323 xzyao:43081 denotes gel electrophoresis
T34493 27-31 WTO:0000129, funRiceGene:509 denotes Cold
T96355 155-159 WTO:0000129, funRiceGene:509 denotes Cold
M_21 253-257 WTO:0000129, funRiceGene:509 denotes cold
M_22 361-365 WTO:0000129, funRiceGene:509 denotes cold
M_23 530-534 WTO:0000129, funRiceGene:509 denotes cold
M_24 715-719 WTO:0000129, funRiceGene:509 denotes cold
M_25 855-859 WTO:0000129, funRiceGene:509 denotes cold
M_26 919-923 WTO:0000129, funRiceGene:509 denotes cold
M_27 978-982 WTO:0000129, funRiceGene:509 denotes cold
M_28 1289-1293 WTO:0000129, funRiceGene:509 denotes cold
M_29 1479-1483 WTO:0000129, funRiceGene:509 denotes cold
M_30 1640-1644 WTO:0000129, funRiceGene:509 denotes cold
M_31 1294-1313 funRiceGene:486, xzyao:13033 denotes signal transduction
M_32 837-843 funRiceGene:361 denotes stress
M_33 1289-1300 xzyao:24999 denotes cold signal
M_34 325-333 xzyao:21745 denotes 2-D DIGE
M_35 393-402 funRiceGene:507 denotes seedlings
M_36 1289-1321 xzyao:25201 denotes cold signal transduction pathway
M_37 882-900 xzyao:7910 denotes freezing tolerance
M_38 1203-1229 xzyao:20813 denotes transcriptional regulation
M_39 891-900 funRiceGene:214 denotes tolerance
M_40 530-544 xzyao:37256 denotes cold treatment
M_41 715-729 xzyao:37256 denotes cold treatment
M_42 828-836 funRiceGene:421 denotes chilling
M_43 1064-1085 hunflair:NA:Gene denotes transcription factors
M_44 654-661 hunflair:NA:Gene denotes OsPLDα1
M_45 1331-1338 hunflair:NA:Gene denotes OsPLDα1
M_46 1600-1607 hunflair:NA:Gene denotes OsPLDα1
M_47 1188-1196 hunflair:NA:Gene denotes OsDREB1A
M_48 1518-1524 hunflair:NA:Gene denotes OsMPK6
M_49 1717-1723 hunflair:NA:Gene denotes OsMPK6
M_50 1504-1516 hunflair:NA:Gene denotes MAP kinase 6
M_51 634-652 hunflair:NA:Gene denotes phospholipase D α1
M_52 193-197 hunflair:NA:Species denotes Rice
M_53 1350-1369 hunflair:NA:Chemical denotes phosphatidylcholine
M_54 1401-1418 hunflair:NA:Chemical denotes phosphatidic acid
M_55 271-275 hunflair:NA:Species denotes rice
M_56 388-392 hunflair:NA:Species denotes rice
M_57 798-802 hunflair:NA:Species denotes rice
M_58 1325-1329 hunflair:NA:Species denotes rice
M_59 1474-1478 hunflair:NA:Species denotes rice
M_60 1658-1662 hunflair:NA:Species denotes rice
M_61 1530-1536 hunflair:NA:Gene denotes OsSIZ1
M_62 1725-1731 hunflair:NA:Gene denotes OsSIZ1
M_63 124-141 hunflair:NA:Gene denotes Phospholipase Dα1
M_64 1420-1422 hunflair:NA:Gene denotes PA
M_65 1555-1557 hunflair:NA:Gene denotes PA
M_66 1676-1678 hunflair:NA:Gene denotes PA
M_67 1752-1754 hunflair:NA:Gene denotes PA
M_68 1401-1418 pubtator:MESH:D010712:Chemical denotes phosphatidic acid
M_69 1350-1369 pubtator:MESH:D010713:Chemical denotes phosphatidylcholine
M_70 271-275 pubtator:4530:Species denotes rice
M_71 388-392 pubtator:4530:Species denotes rice
M_72 798-802 pubtator:4530:Species denotes rice
M_73 1325-1329 pubtator:4530:Species denotes rice
M_74 1474-1478 pubtator:4530:Species denotes rice
M_75 1658-1662 pubtator:4530:Species denotes rice
M_76 193-197 pubtator:4530:Species denotes Rice

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 837-843 funRiceGene:361 denotes stress
M_1 1294-1313 funRiceGene:486, xzyao:14470 denotes signal transduction
M_2 253-267 xzyao:11447 denotes cold responses
M_3 828-836 funRiceGene:421 denotes chilling
M_4 828-843 funRiceGene:144, xzyao:10765 denotes chilling stress
M_5 625-647 xzyao:11698 denotes cellular phospholipase
M_6 1508-1514 funRiceGene:512 denotes kinase
M_7 253-257 WTO:0000129, funRiceGene:509 denotes cold
M_8 530-534 WTO:0000129, funRiceGene:509 denotes cold
M_9 715-719 WTO:0000129, funRiceGene:509 denotes cold
M_10 855-859 WTO:0000129, funRiceGene:509 denotes cold
M_11 1289-1293 WTO:0000129, funRiceGene:509 denotes cold
M_12 1479-1483 WTO:0000129, funRiceGene:509 denotes cold
M_13 1640-1644 WTO:0000129, funRiceGene:509 denotes cold
M_14 530-544 xzyao:1335 denotes cold treatment
M_15 217-232 xzyao:9073 denotes early signaling
M_16 1479-1493 xzyao:2024 denotes cold signaling
M_17 1640-1654 xzyao:2024 denotes cold signaling
M_18 1508-1514 funRiceGene:139 denotes kinase
M_19 1420-1422 hunflair:NA:Gene denotes PA
M_20 1555-1557 hunflair:NA:Gene denotes PA
M_21 1676-1678 hunflair:NA:Gene denotes PA
M_22 1752-1754 hunflair:NA:Gene denotes PA
M_23 634-652 hunflair:NA:Gene denotes phospholipase D α1
M_24 1064-1085 hunflair:NA:Gene denotes transcription factors
M_25 1401-1418 hunflair:NA:Chemical denotes phosphatidic acid
M_26 271-275 hunflair:NA:Species denotes rice
M_27 388-392 hunflair:NA:Species denotes rice
M_28 798-802 hunflair:NA:Species denotes rice
M_29 1325-1329 hunflair:NA:Species denotes rice
M_30 1474-1478 hunflair:NA:Species denotes rice
M_31 1658-1662 hunflair:NA:Species denotes rice
M_32 1350-1369 hunflair:NA:Chemical denotes phosphatidylcholine
M_33 654-661 hunflair:NA:Gene denotes OsPLDα1
M_34 1331-1338 hunflair:NA:Gene denotes OsPLDα1
M_35 1600-1607 hunflair:NA:Gene denotes OsPLDα1
M_36 124-141 hunflair:NA:Gene denotes Phospholipase Dα1
M_37 1518-1524 hunflair:NA:Gene denotes OsMPK6
M_38 1717-1723 hunflair:NA:Gene denotes OsMPK6
M_39 1530-1536 hunflair:NA:Gene denotes OsSIZ1
M_40 1725-1731 hunflair:NA:Gene denotes OsSIZ1
M_41 1504-1516 hunflair:NA:Gene denotes MAP kinase 6
M_42 193-197 hunflair:NA:Species denotes Rice
M_43 1188-1196 hunflair:NA:Gene denotes OsDREB1A
M_44 1401-1418 pubtator:MESH:D010712:Chemical denotes phosphatidic acid
M_45 1350-1369 pubtator:MESH:D010713:Chemical denotes phosphatidylcholine
M_46 193-197 pubtator:4530:Species denotes Rice
M_47 271-275 pubtator:4530:Species denotes rice
M_48 388-392 pubtator:4530:Species denotes rice
M_49 798-802 pubtator:4530:Species denotes rice
M_50 1325-1329 pubtator:4530:Species denotes rice
M_51 1474-1478 pubtator:4530:Species denotes rice
M_52 1658-1662 pubtator:4530:Species denotes rice

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 335-336 http://identifiers.org/oryzabase.gene/11216 denotes 1
T2 703-704 http://identifiers.org/oryzabase.gene/11216 denotes 1
T3 1042-1043 http://identifiers.org/oryzabase.gene/11216 denotes 1
T4 1508-1516 http://identifiers.org/oryzabase.gene/23628 denotes kinase 6

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 654-661 hunflair:NA:Gene denotes OsPLDα1
M_1 1331-1338 hunflair:NA:Gene denotes OsPLDα1
M_2 1600-1607 hunflair:NA:Gene denotes OsPLDα1
M_3 1064-1085 hunflair:NA:Gene denotes transcription factors
M_4 634-652 hunflair:NA:Gene denotes phospholipase D α1
M_5 1401-1418 hunflair:NA:Chemical denotes phosphatidic acid
M_6 193-197 hunflair:NA:Species denotes Rice
M_7 1350-1369 hunflair:NA:Chemical denotes phosphatidylcholine
M_8 1188-1196 hunflair:NA:Gene denotes OsDREB1A
M_9 271-275 hunflair:NA:Species denotes rice
M_10 388-392 hunflair:NA:Species denotes rice
M_11 798-802 hunflair:NA:Species denotes rice
M_12 1325-1329 hunflair:NA:Species denotes rice
M_13 1474-1478 hunflair:NA:Species denotes rice
M_14 1658-1662 hunflair:NA:Species denotes rice
M_15 1518-1524 hunflair:NA:Gene denotes OsMPK6
M_16 1717-1723 hunflair:NA:Gene denotes OsMPK6
M_17 1504-1516 hunflair:NA:Gene denotes MAP kinase 6
M_18 1420-1422 hunflair:NA:Gene denotes PA
M_19 1555-1557 hunflair:NA:Gene denotes PA
M_20 1676-1678 hunflair:NA:Gene denotes PA
M_21 1752-1754 hunflair:NA:Gene denotes PA
M_22 1530-1536 hunflair:NA:Gene denotes OsSIZ1
M_23 1725-1731 hunflair:NA:Gene denotes OsSIZ1
M_24 124-141 hunflair:NA:Gene denotes Phospholipase Dα1

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 304-307 http://identifiers.org/oryzabase.gene/2454 denotes gel
T2 1188-1196 http://identifiers.org/oryzabase.gene/3111 denotes OsDREB1A
T3 1504-1516 http://identifiers.org/oryzabase.gene/6221 denotes MAP kinase 6
T4 1518-1524 http://identifiers.org/oryzabase.gene/7297 denotes OsMPK6
T5 1518-1524 http://identifiers.org/oryzabase.gene/6221 denotes OsMPK6
T6 1518-1524 http://identifiers.org/oryzabase.gene/10233 denotes OsMPK6
T7 1530-1536 http://identifiers.org/oryzabase.gene/9365 denotes OsSIZ1
T8 1717-1723 http://identifiers.org/oryzabase.gene/7297 denotes OsMPK6
T9 1717-1723 http://identifiers.org/oryzabase.gene/6221 denotes OsMPK6
T10 1717-1723 http://identifiers.org/oryzabase.gene/10233 denotes OsMPK6
T11 1725-1731 http://identifiers.org/oryzabase.gene/9365 denotes OsSIZ1
T19918 27-50 http://identifiers.org/ricegap/LOC_Os05g39250 denotes Cold-Regulated Proteins
T28894 361-384 http://identifiers.org/ricegap/LOC_Os05g39250 denotes cold-regulated proteins
T93198 1188-1196 http://identifiers.org/ricegap/LOC_Os09g35030 denotes OsDREB1A
T27644 1504-1516 http://identifiers.org/ricegap/LOC_Os06g06090 denotes MAP kinase 6
T25973 1518-1524 http://identifiers.org/ricegap/LOC_Os10g38950 denotes OsMPK6
T24564 1518-1524 http://identifiers.org/ricegap/LOC_Os06g06090 denotes OsMPK6
T86527 1530-1536 http://identifiers.org/ricegap/LOC_Os05g03430 denotes OsSIZ1
T88220 1717-1723 http://identifiers.org/ricegap/LOC_Os10g38950 denotes OsMPK6
T716 1717-1723 http://identifiers.org/ricegap/LOC_Os06g06090 denotes OsMPK6
T42050 1725-1731 http://identifiers.org/ricegap/LOC_Os05g03430 denotes OsSIZ1
T11888 1755-1771 http://identifiers.org/ricegap/LOC_Os02g02410 denotes binding proteins
T75912 27-50 http://identifiers.org/rapdb.locus/Os05g0468800 denotes Cold-Regulated Proteins
T35998 361-384 http://identifiers.org/rapdb.locus/Os05g0468800 denotes cold-regulated proteins
T19779 1188-1196 http://identifiers.org/rapdb.locus/Os09g0522200 denotes OsDREB1A
T24140 1504-1516 http://identifiers.org/rapdb.locus/Os06g0154500 denotes MAP kinase 6
T39478 1518-1524 http://identifiers.org/rapdb.locus/Os10g0533600 denotes OsMPK6
T31998 1518-1524 http://identifiers.org/rapdb.locus/Os06g0154500 denotes OsMPK6
T73183 1530-1536 http://identifiers.org/rapdb.locus/Os05g0125000 denotes OsSIZ1
T15136 1717-1723 http://identifiers.org/rapdb.locus/Os10g0533600 denotes OsMPK6
T21369 1717-1723 http://identifiers.org/rapdb.locus/Os06g0154500 denotes OsMPK6
T35012 1725-1731 http://identifiers.org/rapdb.locus/Os05g0125000 denotes OsSIZ1
T58387 1755-1771 http://identifiers.org/rapdb.locus/Os02g0115900 denotes binding proteins
T84958 1188-1196 http://identifiers.org/uniprot/Q64MA1 denotes OsDREB1A
T97894 1504-1516 http://identifiers.org/uniprot/Q84UI5 denotes MAP kinase 6
T22933 1518-1524 http://identifiers.org/uniprot/Q84UI5 denotes OsMPK6
T54215 1518-1524 http://identifiers.org/uniprot/Q336X9 denotes OsMPK6
T96141 1530-1536 http://identifiers.org/uniprot/Q6L4L4 denotes OsSIZ1
T10815 1717-1723 http://identifiers.org/uniprot/Q84UI5 denotes OsMPK6
T20921 1717-1723 http://identifiers.org/uniprot/Q336X9 denotes OsMPK6
T62728 1725-1731 http://identifiers.org/uniprot/Q6L4L4 denotes OsSIZ1
M_0 654-661 hunflair:NA:Gene denotes OsPLDα1
M_1 1331-1338 hunflair:NA:Gene denotes OsPLDα1
M_2 1600-1607 hunflair:NA:Gene denotes OsPLDα1
M_3 1064-1085 hunflair:NA:Gene denotes transcription factors
M_4 634-652 hunflair:NA:Gene denotes phospholipase D α1
M_5 1401-1418 hunflair:NA:Chemical denotes phosphatidic acid
M_6 193-197 hunflair:NA:Species denotes Rice
M_7 1350-1369 hunflair:NA:Chemical denotes phosphatidylcholine
M_8 1188-1196 hunflair:NA:Gene denotes OsDREB1A
M_9 271-275 hunflair:NA:Species denotes rice
M_10 388-392 hunflair:NA:Species denotes rice
M_11 798-802 hunflair:NA:Species denotes rice
M_12 1325-1329 hunflair:NA:Species denotes rice
M_13 1474-1478 hunflair:NA:Species denotes rice
M_14 1658-1662 hunflair:NA:Species denotes rice
M_15 1518-1524 hunflair:NA:Gene denotes OsMPK6
M_16 1717-1723 hunflair:NA:Gene denotes OsMPK6
M_17 1504-1516 hunflair:NA:Gene denotes MAP kinase 6
M_18 1420-1422 hunflair:NA:Gene denotes PA
M_19 1555-1557 hunflair:NA:Gene denotes PA
M_20 1676-1678 hunflair:NA:Gene denotes PA
M_21 1752-1754 hunflair:NA:Gene denotes PA
M_22 1530-1536 hunflair:NA:Gene denotes OsSIZ1
M_23 1725-1731 hunflair:NA:Gene denotes OsSIZ1
M_24 124-141 hunflair:NA:Gene denotes Phospholipase Dα1

OryzaGP

Id Subject Object Predicate Lexical cue
T1 1045-1052 gene denotes OsDREB1
T2 1188-1196 gene denotes OsDREB1A
T3 1331-1338 gene denotes OsPLDα1
T4 1518-1524 gene denotes OsMPK6
T5 1530-1536 gene denotes OsSIZ1

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 1003-1014 Phenotype denotes dehydration HP:0001944

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 193-197 OrganismTaxon denotes Rice 4530
T2 271-275 OrganismTaxon denotes rice 4530
T3 388-392 OrganismTaxon denotes rice 4530
T4 798-802 OrganismTaxon denotes rice 4530
T5 1325-1329 OrganismTaxon denotes rice 4530
T6 1474-1478 OrganismTaxon denotes rice 4530
T7 1658-1662 OrganismTaxon denotes rice 4530

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 432-437 Body_part denotes spots http://purl.obolibrary.org/obo/UBERON_2002283