PubMed:26744119 JSONTXT

Annnotations TAB JSON ListView MergeView

    OryzaGP_2021_v2

    {"project":"OryzaGP_2021_v2","denotations":[{"id":"T1","span":{"begin":19,"end":22},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T2","span":{"begin":114,"end":117},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T3","span":{"begin":123,"end":126},"obj":"http://identifiers.org/oryzabase.gene/2987"},{"id":"T4","span":{"begin":160,"end":164},"obj":"http://identifiers.org/oryzabase.gene/2987"},{"id":"T5","span":{"begin":273,"end":276},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T6","span":{"begin":395,"end":398},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T7","span":{"begin":417,"end":420},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T8","span":{"begin":581,"end":584},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T9","span":{"begin":618,"end":621},"obj":"http://identifiers.org/oryzabase.gene/2987"},{"id":"T10","span":{"begin":622,"end":626},"obj":"http://identifiers.org/oryzabase.gene/2987"},{"id":"T11","span":{"begin":731,"end":734},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T12","span":{"begin":881,"end":884},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T13","span":{"begin":970,"end":974},"obj":"http://identifiers.org/oryzabase.gene/3079"},{"id":"T14","span":{"begin":982,"end":989},"obj":"http://identifiers.org/oryzabase.gene/3078"},{"id":"T15","span":{"begin":994,"end":1002},"obj":"http://identifiers.org/oryzabase.gene/3085"},{"id":"T16","span":{"begin":1030,"end":1037},"obj":"http://identifiers.org/oryzabase.gene/2969"},{"id":"T17","span":{"begin":1039,"end":1046},"obj":"http://identifiers.org/oryzabase.gene/3079"},{"id":"T18","span":{"begin":1051,"end":1058},"obj":"http://identifiers.org/oryzabase.gene/6209"},{"id":"T19","span":{"begin":1109,"end":1112},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T18061","span":{"begin":19,"end":22},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T723","span":{"begin":114,"end":117},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T3379","span":{"begin":123,"end":126},"obj":"http://identifiers.org/rapdb.locus/Os04g0598300"},{"id":"T45351","span":{"begin":160,"end":164},"obj":"http://identifiers.org/rapdb.locus/Os04g0598300"},{"id":"T30923","span":{"begin":273,"end":276},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T38654","span":{"begin":395,"end":398},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T51523","span":{"begin":417,"end":420},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T27151","span":{"begin":581,"end":584},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T55354","span":{"begin":618,"end":621},"obj":"http://identifiers.org/rapdb.locus/Os04g0598300"},{"id":"T50241","span":{"begin":622,"end":626},"obj":"http://identifiers.org/rapdb.locus/Os04g0598300"},{"id":"T15818","span":{"begin":731,"end":734},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T2925","span":{"begin":881,"end":884},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T14709","span":{"begin":970,"end":974},"obj":"http://identifiers.org/rapdb.locus/Os08g0531700"},{"id":"T5971","span":{"begin":982,"end":989},"obj":"http://identifiers.org/rapdb.locus/Os02g0682200"},{"id":"T98974","span":{"begin":994,"end":1002},"obj":"http://identifiers.org/rapdb.locus/Os04g0580700"},{"id":"T91461","span":{"begin":1030,"end":1037},"obj":"http://identifiers.org/rapdb.locus/Os03g0215400"},{"id":"T15993","span":{"begin":1039,"end":1046},"obj":"http://identifiers.org/rapdb.locus/Os08g0531700"},{"id":"T13919","span":{"begin":1051,"end":1058},"obj":"http://identifiers.org/rapdb.locus/Os09g0507200"},{"id":"T48336","span":{"begin":1109,"end":1112},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"}],"text":"Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.\nFRIZZLE PANICLE (FZP) and RFL/ABERRANT PANICLE ORGANIZATION 2 (APO2) play important roles in regulating the ABCDE floral organ identity genes. However, the relationships among FZP and these floral identity genes in the regulation of panicle formation remain unclear. Here, we used the novel mutant fzp-11, wild-type and FZP-overexpressing plants to compare the expression of these genes during panicle development by real-time PCR and in situ hybridization. The results indicate that FZP is a major negative regulator of RFL/APO2 and determines the transition from panicle branching to spikelet formation. Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle. FZP overexpression positively regulates the expression of a subset of the class B genes, AGL6 genes (OsMADS6 and OsMADS17) as well as class E genes (OsMADS1, OsMADS7 and OsMADS8) in floral meristem (FM). Thus, it suggested that FZP could specify floral organ identity by regulating the related OsMADS-box genes."}

    21k_plant_trait_mention

    {"project":"21k_plant_trait_mention","denotations":[{"id":"M_0","span":{"begin":794,"end":804},"obj":"funRiceGene:54"},{"id":"M_1","span":{"begin":809,"end":821},"obj":"funRiceGene:103"},{"id":"M_2","span":{"begin":683,"end":691},"obj":"PO:0009051, funRiceGene:442"},{"id":"M_3","span":{"begin":211,"end":232},"obj":"TO:0006019, xzyao:10852"},{"id":"M_4","span":{"begin":1127,"end":1148},"obj":"TO:0006019, xzyao:10852"},{"id":"M_5","span":{"begin":105,"end":112},"obj":"funRiceGene:434"},{"id":"M_6","span":{"begin":136,"end":143},"obj":"funRiceGene:434"},{"id":"M_7","span":{"begin":330,"end":337},"obj":"funRiceGene:434"},{"id":"M_8","span":{"begin":491,"end":498},"obj":"funRiceGene:434"},{"id":"M_9","span":{"begin":662,"end":669},"obj":"funRiceGene:434"},{"id":"M_10","span":{"begin":211,"end":217},"obj":"funRiceGene:183"},{"id":"M_11","span":{"begin":287,"end":293},"obj":"funRiceGene:183"},{"id":"M_12","span":{"begin":1063,"end":1069},"obj":"funRiceGene:183"},{"id":"M_13","span":{"begin":1127,"end":1133},"obj":"funRiceGene:183"},{"id":"M_14","span":{"begin":754,"end":771},"obj":"funRiceGene:231, xzyao:9542"},{"id":"M_15","span":{"begin":670,"end":679},"obj":"funRiceGene:525"},{"id":"M_16","span":{"begin":763,"end":771},"obj":"funRiceGene:300"},{"id":"M_17","span":{"begin":1070,"end":1078},"obj":"funRiceGene:300"},{"id":"M_18","span":{"begin":499,"end":510},"obj":"WTO:0000011, funRiceGene:359"},{"id":"M_19","span":{"begin":287,"end":302},"obj":"xzyao:12374"},{"id":"M_20","span":{"begin":1063,"end":1078},"obj":"funRiceGene:508, xzyao:7131"},{"id":"M_21","span":{"begin":850,"end":868},"obj":"xzyao:10815"},{"id":"M_22","span":{"begin":218,"end":232},"obj":"TO:0006018, funRiceGene:431, xzyao:17644"},{"id":"M_23","span":{"begin":1134,"end":1148},"obj":"TO:0006018, funRiceGene:431, xzyao:17644"},{"id":"M_24","span":{"begin":211,"end":223},"obj":"PO:0025395, funRiceGene:293, xzyao:10281"},{"id":"M_25","span":{"begin":1127,"end":1139},"obj":"PO:0025395, funRiceGene:293, xzyao:10281"},{"id":"M_26","span":{"begin":662,"end":679},"obj":"xzyao:12846"},{"id":"M_27","span":{"begin":123,"end":126},"obj":"hunflair:NA:Gene"},{"id":"M_28","span":{"begin":618,"end":621},"obj":"hunflair:NA:Gene"},{"id":"M_29","span":{"begin":97,"end":112},"obj":"hunflair:NA:Gene"},{"id":"M_30","span":{"begin":1051,"end":1058},"obj":"hunflair:NA:Gene"},{"id":"M_31","span":{"begin":127,"end":158},"obj":"hunflair:NA:Gene"},{"id":"M_32","span":{"begin":1039,"end":1046},"obj":"hunflair:NA:Gene"},{"id":"M_33","span":{"begin":91,"end":95},"obj":"hunflair:NA:Species"},{"id":"M_34","span":{"begin":160,"end":164},"obj":"hunflair:NA:Gene"},{"id":"M_35","span":{"begin":622,"end":626},"obj":"hunflair:NA:Gene"},{"id":"M_36","span":{"begin":395,"end":401},"obj":"hunflair:NA:Gene"},{"id":"M_37","span":{"begin":1030,"end":1037},"obj":"hunflair:NA:Gene"},{"id":"M_38","span":{"begin":19,"end":22},"obj":"hunflair:NA:Gene"},{"id":"M_39","span":{"begin":114,"end":117},"obj":"hunflair:NA:Gene"},{"id":"M_40","span":{"begin":273,"end":276},"obj":"hunflair:NA:Gene"},{"id":"M_41","span":{"begin":417,"end":420},"obj":"hunflair:NA:Gene"},{"id":"M_42","span":{"begin":581,"end":584},"obj":"hunflair:NA:Gene"},{"id":"M_43","span":{"begin":731,"end":734},"obj":"hunflair:NA:Gene"},{"id":"M_44","span":{"begin":881,"end":884},"obj":"hunflair:NA:Gene"},{"id":"M_45","span":{"begin":1109,"end":1112},"obj":"hunflair:NA:Gene"},{"id":"M_46","span":{"begin":994,"end":1002},"obj":"hunflair:NA:Gene"},{"id":"M_47","span":{"begin":982,"end":989},"obj":"hunflair:NA:Gene"},{"id":"M_48","span":{"begin":19,"end":22},"obj":"hunflair:NA:Chemical"},{"id":"M_49","span":{"begin":114,"end":117},"obj":"hunflair:NA:Chemical"},{"id":"M_50","span":{"begin":273,"end":276},"obj":"hunflair:NA:Chemical"},{"id":"M_51","span":{"begin":417,"end":420},"obj":"hunflair:NA:Chemical"},{"id":"M_52","span":{"begin":581,"end":584},"obj":"hunflair:NA:Chemical"},{"id":"M_53","span":{"begin":731,"end":734},"obj":"hunflair:NA:Chemical"},{"id":"M_54","span":{"begin":881,"end":884},"obj":"hunflair:NA:Chemical"},{"id":"M_55","span":{"begin":1109,"end":1112},"obj":"hunflair:NA:Chemical"},{"id":"M_56","span":{"begin":970,"end":974},"obj":"hunflair:NA:Gene"},{"id":"M_57","span":{"begin":91,"end":95},"obj":"pubtator:4530:Species"}],"text":"Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.\nFRIZZLE PANICLE (FZP) and RFL/ABERRANT PANICLE ORGANIZATION 2 (APO2) play important roles in regulating the ABCDE floral organ identity genes. However, the relationships among FZP and these floral identity genes in the regulation of panicle formation remain unclear. Here, we used the novel mutant fzp-11, wild-type and FZP-overexpressing plants to compare the expression of these genes during panicle development by real-time PCR and in situ hybridization. The results indicate that FZP is a major negative regulator of RFL/APO2 and determines the transition from panicle branching to spikelet formation. Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle. FZP overexpression positively regulates the expression of a subset of the class B genes, AGL6 genes (OsMADS6 and OsMADS17) as well as class E genes (OsMADS1, OsMADS7 and OsMADS8) in floral meristem (FM). Thus, it suggested that FZP could specify floral organ identity by regulating the related OsMADS-box genes."}

    pqqtest_sentence

    {"project":"pqqtest_sentence","denotations":[{"id":"M_0","span":{"begin":287,"end":308},"obj":"cand:funRiceGene:260-ovule identity"},{"id":"M_1","span":{"begin":287,"end":308},"obj":"cand:TO:0006019-floral organ identity"},{"id":"M_2","span":{"begin":287,"end":308},"obj":"cand:PPO:0001025-floral structure"},{"id":"M_3","span":{"begin":287,"end":308},"obj":"cand:PPO:0002026-floral structure presence"},{"id":"M_4","span":{"begin":287,"end":308},"obj":"cand:TO:0006017-meristem identity"},{"id":"M_5","span":{"begin":287,"end":308},"obj":"cand:PPO:0001028-open floral structure"},{"id":"M_6","span":{"begin":287,"end":308},"obj":"cand:PO:0008043-floral epidermis"},{"id":"M_7","span":{"begin":287,"end":308},"obj":"cand:funRiceGene:84-organ identity"},{"id":"M_8","span":{"begin":287,"end":308},"obj":"cand:funRiceGene:204-floral meristem"},{"id":"M_9","span":{"begin":287,"end":308},"obj":"cand:WTO:0000080-floral initiation"},{"id":"M_10","span":{"begin":754,"end":781},"obj":"cand:PO:0007073-formation of axillary shoot stage"},{"id":"M_11","span":{"begin":754,"end":781},"obj":"cand:PO:0009105-inflorescence axillary meristem"},{"id":"M_12","span":{"begin":754,"end":781},"obj":"cand:funRiceGene:206-axillary meristem"},{"id":"M_13","span":{"begin":754,"end":781},"obj":"cand:PO:0000232-axillary bud meristem"},{"id":"M_14","span":{"begin":754,"end":781},"obj":"cand:PO:0005002-cauline axillary shoot"},{"id":"M_15","span":{"begin":754,"end":781},"obj":"cand:PO:0025069-aerial tuber axillary bud meristem"},{"id":"M_16","span":{"begin":754,"end":781},"obj":"cand:funRiceGene:467-pollen exine formation"},{"id":"M_17","span":{"begin":754,"end":781},"obj":"cand:PO:0007539-B2 lateral root meristem formation"},{"id":"M_18","span":{"begin":754,"end":781},"obj":"cand:PO:0007524-B1 primary root meristem formation"},{"id":"M_19","span":{"begin":754,"end":781},"obj":"cand:PO:0007514-B3 crown root meristem formation"},{"id":"M_20","span":{"begin":273,"end":276},"obj":"GeneID:RAPID:Os07g0669500MSUID:LOC_Os07g47330GraID:GR:0060339"},{"id":"M_21","span":{"begin":731,"end":734},"obj":"GeneID:RAPID:Os07g0669500MSUID:LOC_Os07g47330GraID:GR:0060339"},{"id":"T41625","span":{"begin":218,"end":232},"obj":"TO:0006018, funRiceGene:431, xzyao:39679"},{"id":"T57694","span":{"begin":1134,"end":1148},"obj":"TO:0006018, funRiceGene:431, xzyao:39679"},{"id":"T23465","span":{"begin":211,"end":223},"obj":"PO:0025395, funRiceGene:293, xzyao:33628"},{"id":"T78454","span":{"begin":1127,"end":1139},"obj":"PO:0025395, funRiceGene:293, xzyao:33628"},{"id":"T54469","span":{"begin":69,"end":77},"obj":"PO:0009051, funRiceGene:442"},{"id":"T20884","span":{"begin":683,"end":691},"obj":"PO:0009051, funRiceGene:442"},{"id":"T21542","span":{"begin":127,"end":156},"obj":"xzyao:4042"},{"id":"T79835","span":{"begin":499,"end":510},"obj":"WTO:0000011, funRiceGene:359"},{"id":"T53893","span":{"begin":809,"end":821},"obj":"funRiceGene:103"},{"id":"T44334","span":{"begin":47,"end":54},"obj":"funRiceGene:434"},{"id":"T81078","span":{"begin":105,"end":112},"obj":"funRiceGene:434"},{"id":"T53987","span":{"begin":136,"end":143},"obj":"funRiceGene:434"},{"id":"T87042","span":{"begin":330,"end":337},"obj":"funRiceGene:434"},{"id":"T7920","span":{"begin":491,"end":498},"obj":"funRiceGene:434"},{"id":"T19700","span":{"begin":662,"end":669},"obj":"funRiceGene:434"},{"id":"T3807","span":{"begin":872,"end":879},"obj":"funRiceGene:434"},{"id":"T76046","span":{"begin":136,"end":156},"obj":"xzyao:17734"},{"id":"T48684","span":{"begin":596,"end":614},"obj":"xzyao:1796"},{"id":"T66461","span":{"begin":763,"end":771},"obj":"funRiceGene:300"},{"id":"T30594","span":{"begin":1070,"end":1078},"obj":"funRiceGene:300"},{"id":"T34323","span":{"begin":491,"end":510},"obj":"xzyao:35771"},{"id":"T6574","span":{"begin":754,"end":771},"obj":"funRiceGene:231, xzyao:15544"},{"id":"M_22","span":{"begin":850,"end":868},"obj":"xzyao:2461"},{"id":"M_23","span":{"begin":47,"end":64},"obj":"xzyao:28777"},{"id":"M_24","span":{"begin":662,"end":679},"obj":"xzyao:28777"},{"id":"M_25","span":{"begin":287,"end":308},"obj":"xzyao:30393"},{"id":"M_26","span":{"begin":211,"end":217},"obj":"funRiceGene:183"},{"id":"M_27","span":{"begin":287,"end":293},"obj":"funRiceGene:183"},{"id":"M_28","span":{"begin":1063,"end":1069},"obj":"funRiceGene:183"},{"id":"M_29","span":{"begin":1127,"end":1133},"obj":"funRiceGene:183"},{"id":"M_30","span":{"begin":794,"end":804},"obj":"funRiceGene:54"},{"id":"M_31","span":{"begin":763,"end":781},"obj":"xzyao:25972"},{"id":"M_32","span":{"begin":211,"end":238},"obj":"xzyao:36001"},{"id":"M_33","span":{"begin":205,"end":238},"obj":"xzyao:30080"},{"id":"M_34","span":{"begin":55,"end":64},"obj":"funRiceGene:525"},{"id":"M_35","span":{"begin":670,"end":679},"obj":"funRiceGene:525"},{"id":"M_36","span":{"begin":754,"end":781},"obj":"xzyao:33714"},{"id":"M_37","span":{"begin":1063,"end":1078},"obj":"funRiceGene:508, xzyao:25765"},{"id":"M_38","span":{"begin":69,"end":87},"obj":"xzyao:38491"},{"id":"M_39","span":{"begin":683,"end":701},"obj":"xzyao:38491"},{"id":"M_40","span":{"begin":211,"end":232},"obj":"TO:0006019, xzyao:20378"},{"id":"M_41","span":{"begin":1127,"end":1148},"obj":"TO:0006019, xzyao:20378"},{"id":"M_42","span":{"begin":395,"end":401},"obj":"hunflair:NA:Gene"},{"id":"M_43","span":{"begin":97,"end":112},"obj":"hunflair:NA:Gene"},{"id":"M_44","span":{"begin":1039,"end":1046},"obj":"hunflair:NA:Gene"},{"id":"M_45","span":{"begin":994,"end":1002},"obj":"hunflair:NA:Gene"},{"id":"M_46","span":{"begin":19,"end":22},"obj":"hunflair:NA:Gene"},{"id":"M_47","span":{"begin":114,"end":117},"obj":"hunflair:NA:Gene"},{"id":"M_48","span":{"begin":273,"end":276},"obj":"hunflair:NA:Gene"},{"id":"M_49","span":{"begin":417,"end":420},"obj":"hunflair:NA:Gene"},{"id":"M_50","span":{"begin":581,"end":584},"obj":"hunflair:NA:Gene"},{"id":"M_51","span":{"begin":731,"end":734},"obj":"hunflair:NA:Gene"},{"id":"M_52","span":{"begin":881,"end":884},"obj":"hunflair:NA:Gene"},{"id":"M_53","span":{"begin":1109,"end":1112},"obj":"hunflair:NA:Gene"},{"id":"M_54","span":{"begin":19,"end":22},"obj":"hunflair:NA:Chemical"},{"id":"M_55","span":{"begin":114,"end":117},"obj":"hunflair:NA:Chemical"},{"id":"M_56","span":{"begin":273,"end":276},"obj":"hunflair:NA:Chemical"},{"id":"M_57","span":{"begin":417,"end":420},"obj":"hunflair:NA:Chemical"},{"id":"M_58","span":{"begin":581,"end":584},"obj":"hunflair:NA:Chemical"},{"id":"M_59","span":{"begin":731,"end":734},"obj":"hunflair:NA:Chemical"},{"id":"M_60","span":{"begin":881,"end":884},"obj":"hunflair:NA:Chemical"},{"id":"M_61","span":{"begin":1109,"end":1112},"obj":"hunflair:NA:Chemical"},{"id":"M_62","span":{"begin":970,"end":974},"obj":"hunflair:NA:Gene"},{"id":"M_63","span":{"begin":1030,"end":1037},"obj":"hunflair:NA:Gene"},{"id":"M_64","span":{"begin":127,"end":158},"obj":"hunflair:NA:Gene"},{"id":"M_65","span":{"begin":123,"end":126},"obj":"hunflair:NA:Gene"},{"id":"M_66","span":{"begin":618,"end":621},"obj":"hunflair:NA:Gene"},{"id":"M_67","span":{"begin":1051,"end":1058},"obj":"hunflair:NA:Gene"},{"id":"M_68","span":{"begin":160,"end":164},"obj":"hunflair:NA:Gene"},{"id":"M_69","span":{"begin":622,"end":626},"obj":"hunflair:NA:Gene"},{"id":"M_70","span":{"begin":91,"end":95},"obj":"hunflair:NA:Species"},{"id":"M_71","span":{"begin":982,"end":989},"obj":"hunflair:NA:Gene"},{"id":"M_72","span":{"begin":91,"end":95},"obj":"pubtator:4530:Species"}],"text":"Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.\nFRIZZLE PANICLE (FZP) and RFL/ABERRANT PANICLE ORGANIZATION 2 (APO2) play important roles in regulating the ABCDE floral organ identity genes. However, the relationships among FZP and these floral identity genes in the regulation of panicle formation remain unclear. Here, we used the novel mutant fzp-11, wild-type and FZP-overexpressing plants to compare the expression of these genes during panicle development by real-time PCR and in situ hybridization. The results indicate that FZP is a major negative regulator of RFL/APO2 and determines the transition from panicle branching to spikelet formation. Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle. FZP overexpression positively regulates the expression of a subset of the class B genes, AGL6 genes (OsMADS6 and OsMADS17) as well as class E genes (OsMADS1, OsMADS7 and OsMADS8) in floral meristem (FM). Thus, it suggested that FZP could specify floral organ identity by regulating the related OsMADS-box genes."}

    OryzaGP_2021_FLAIR

    {"project":"OryzaGP_2021_FLAIR","denotations":[{"id":"M_0","span":{"begin":970,"end":974},"obj":"hunflair:NA:Gene"},{"id":"M_1","span":{"begin":1030,"end":1037},"obj":"hunflair:NA:Gene"},{"id":"M_2","span":{"begin":127,"end":158},"obj":"hunflair:NA:Gene"},{"id":"M_3","span":{"begin":994,"end":1002},"obj":"hunflair:NA:Gene"},{"id":"M_4","span":{"begin":395,"end":401},"obj":"hunflair:NA:Gene"},{"id":"M_5","span":{"begin":91,"end":95},"obj":"hunflair:NA:Species"},{"id":"M_6","span":{"begin":123,"end":126},"obj":"hunflair:NA:Gene"},{"id":"M_7","span":{"begin":618,"end":621},"obj":"hunflair:NA:Gene"},{"id":"M_8","span":{"begin":19,"end":22},"obj":"hunflair:NA:Chemical"},{"id":"M_9","span":{"begin":114,"end":117},"obj":"hunflair:NA:Chemical"},{"id":"M_10","span":{"begin":273,"end":276},"obj":"hunflair:NA:Chemical"},{"id":"M_11","span":{"begin":417,"end":420},"obj":"hunflair:NA:Chemical"},{"id":"M_12","span":{"begin":581,"end":584},"obj":"hunflair:NA:Chemical"},{"id":"M_13","span":{"begin":731,"end":734},"obj":"hunflair:NA:Chemical"},{"id":"M_14","span":{"begin":881,"end":884},"obj":"hunflair:NA:Chemical"},{"id":"M_15","span":{"begin":1109,"end":1112},"obj":"hunflair:NA:Chemical"},{"id":"M_16","span":{"begin":160,"end":164},"obj":"hunflair:NA:Gene"},{"id":"M_17","span":{"begin":622,"end":626},"obj":"hunflair:NA:Gene"},{"id":"M_18","span":{"begin":982,"end":989},"obj":"hunflair:NA:Gene"},{"id":"M_19","span":{"begin":1051,"end":1058},"obj":"hunflair:NA:Gene"},{"id":"M_20","span":{"begin":97,"end":112},"obj":"hunflair:NA:Gene"},{"id":"M_21","span":{"begin":19,"end":22},"obj":"hunflair:NA:Gene"},{"id":"M_22","span":{"begin":114,"end":117},"obj":"hunflair:NA:Gene"},{"id":"M_23","span":{"begin":273,"end":276},"obj":"hunflair:NA:Gene"},{"id":"M_24","span":{"begin":417,"end":420},"obj":"hunflair:NA:Gene"},{"id":"M_25","span":{"begin":581,"end":584},"obj":"hunflair:NA:Gene"},{"id":"M_26","span":{"begin":731,"end":734},"obj":"hunflair:NA:Gene"},{"id":"M_27","span":{"begin":881,"end":884},"obj":"hunflair:NA:Gene"},{"id":"M_28","span":{"begin":1109,"end":1112},"obj":"hunflair:NA:Gene"},{"id":"M_29","span":{"begin":1039,"end":1046},"obj":"hunflair:NA:Gene"}],"text":"Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.\nFRIZZLE PANICLE (FZP) and RFL/ABERRANT PANICLE ORGANIZATION 2 (APO2) play important roles in regulating the ABCDE floral organ identity genes. However, the relationships among FZP and these floral identity genes in the regulation of panicle formation remain unclear. Here, we used the novel mutant fzp-11, wild-type and FZP-overexpressing plants to compare the expression of these genes during panicle development by real-time PCR and in situ hybridization. The results indicate that FZP is a major negative regulator of RFL/APO2 and determines the transition from panicle branching to spikelet formation. Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle. FZP overexpression positively regulates the expression of a subset of the class B genes, AGL6 genes (OsMADS6 and OsMADS17) as well as class E genes (OsMADS1, OsMADS7 and OsMADS8) in floral meristem (FM). Thus, it suggested that FZP could specify floral organ identity by regulating the related OsMADS-box genes."}

    OryzaGP_2021

    {"project":"OryzaGP_2021","denotations":[{"id":"T1","span":{"begin":19,"end":22},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T2","span":{"begin":97,"end":112},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T3","span":{"begin":114,"end":117},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T4","span":{"begin":123,"end":158},"obj":"http://identifiers.org/oryzabase.gene/2987"},{"id":"T5","span":{"begin":160,"end":164},"obj":"http://identifiers.org/oryzabase.gene/2987"},{"id":"T6","span":{"begin":273,"end":276},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T7","span":{"begin":395,"end":398},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T8","span":{"begin":417,"end":420},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T9","span":{"begin":581,"end":584},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T10","span":{"begin":618,"end":621},"obj":"http://identifiers.org/oryzabase.gene/2987"},{"id":"T11","span":{"begin":622,"end":626},"obj":"http://identifiers.org/oryzabase.gene/2987"},{"id":"T12","span":{"begin":731,"end":734},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T13","span":{"begin":881,"end":884},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T14","span":{"begin":970,"end":974},"obj":"http://identifiers.org/oryzabase.gene/3079"},{"id":"T15","span":{"begin":982,"end":989},"obj":"http://identifiers.org/oryzabase.gene/3078"},{"id":"T16","span":{"begin":994,"end":1002},"obj":"http://identifiers.org/oryzabase.gene/3085"},{"id":"T17","span":{"begin":1030,"end":1037},"obj":"http://identifiers.org/oryzabase.gene/2969"},{"id":"T18","span":{"begin":1039,"end":1046},"obj":"http://identifiers.org/oryzabase.gene/3079"},{"id":"T19","span":{"begin":1051,"end":1058},"obj":"http://identifiers.org/oryzabase.gene/6209"},{"id":"T20","span":{"begin":1109,"end":1112},"obj":"http://identifiers.org/oryzabase.gene/117"},{"id":"T25906","span":{"begin":19,"end":22},"obj":"http://identifiers.org/ricegap/LOC_Os07g47330"},{"id":"T33615","span":{"begin":97,"end":112},"obj":"http://identifiers.org/ricegap/LOC_Os07g47330"},{"id":"T94450","span":{"begin":114,"end":117},"obj":"http://identifiers.org/ricegap/LOC_Os07g47330"},{"id":"T3890","span":{"begin":123,"end":158},"obj":"http://identifiers.org/ricegap/LOC_Os04g51000"},{"id":"T53656","span":{"begin":160,"end":164},"obj":"http://identifiers.org/ricegap/LOC_Os04g51000"},{"id":"T664","span":{"begin":273,"end":276},"obj":"http://identifiers.org/ricegap/LOC_Os07g47330"},{"id":"T44518","span":{"begin":395,"end":398},"obj":"http://identifiers.org/ricegap/LOC_Os07g47330"},{"id":"T50129","span":{"begin":417,"end":420},"obj":"http://identifiers.org/ricegap/LOC_Os07g47330"},{"id":"T72895","span":{"begin":581,"end":584},"obj":"http://identifiers.org/ricegap/LOC_Os07g47330"},{"id":"T19035","span":{"begin":618,"end":621},"obj":"http://identifiers.org/ricegap/LOC_Os04g51000"},{"id":"T37650","span":{"begin":622,"end":626},"obj":"http://identifiers.org/ricegap/LOC_Os04g51000"},{"id":"T36927","span":{"begin":731,"end":734},"obj":"http://identifiers.org/ricegap/LOC_Os07g47330"},{"id":"T81905","span":{"begin":881,"end":884},"obj":"http://identifiers.org/ricegap/LOC_Os07g47330"},{"id":"T23886","span":{"begin":970,"end":974},"obj":"http://identifiers.org/ricegap/LOC_Os08g41950"},{"id":"T76160","span":{"begin":982,"end":989},"obj":"http://identifiers.org/ricegap/LOC_Os02g45770"},{"id":"T74284","span":{"begin":994,"end":1002},"obj":"http://identifiers.org/ricegap/LOC_Os04g49150"},{"id":"T97636","span":{"begin":1030,"end":1037},"obj":"http://identifiers.org/ricegap/LOC_Os03g11614"},{"id":"T87050","span":{"begin":1039,"end":1046},"obj":"http://identifiers.org/ricegap/LOC_Os08g41950"},{"id":"T10982","span":{"begin":1051,"end":1058},"obj":"http://identifiers.org/ricegap/LOC_Os09g32948"},{"id":"T81219","span":{"begin":1109,"end":1112},"obj":"http://identifiers.org/ricegap/LOC_Os07g47330"},{"id":"T77736","span":{"begin":19,"end":22},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T11932","span":{"begin":97,"end":112},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T78851","span":{"begin":114,"end":117},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T74554","span":{"begin":123,"end":158},"obj":"http://identifiers.org/rapdb.locus/Os04g0598300"},{"id":"T47361","span":{"begin":160,"end":164},"obj":"http://identifiers.org/rapdb.locus/Os04g0598300"},{"id":"T34817","span":{"begin":273,"end":276},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T84669","span":{"begin":395,"end":398},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T98572","span":{"begin":417,"end":420},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T5271","span":{"begin":581,"end":584},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T68210","span":{"begin":618,"end":621},"obj":"http://identifiers.org/rapdb.locus/Os04g0598300"},{"id":"T70773","span":{"begin":622,"end":626},"obj":"http://identifiers.org/rapdb.locus/Os04g0598300"},{"id":"T20498","span":{"begin":731,"end":734},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T63765","span":{"begin":881,"end":884},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T22318","span":{"begin":970,"end":974},"obj":"http://identifiers.org/rapdb.locus/Os08g0531700"},{"id":"T24954","span":{"begin":982,"end":989},"obj":"http://identifiers.org/rapdb.locus/Os02g0682200"},{"id":"T91586","span":{"begin":994,"end":1002},"obj":"http://identifiers.org/rapdb.locus/Os04g0580700"},{"id":"T91798","span":{"begin":1030,"end":1037},"obj":"http://identifiers.org/rapdb.locus/Os03g0215400"},{"id":"T4460","span":{"begin":1039,"end":1046},"obj":"http://identifiers.org/rapdb.locus/Os08g0531700"},{"id":"T13036","span":{"begin":1051,"end":1058},"obj":"http://identifiers.org/rapdb.locus/Os09g0507200"},{"id":"T70889","span":{"begin":1109,"end":1112},"obj":"http://identifiers.org/rapdb.locus/Os07g0669500"},{"id":"T12552","span":{"begin":19,"end":22},"obj":"http://identifiers.org/uniprot/Q8H3Q1"},{"id":"T90371","span":{"begin":97,"end":112},"obj":"http://identifiers.org/uniprot/Q8H3Q1"},{"id":"T10972","span":{"begin":114,"end":117},"obj":"http://identifiers.org/uniprot/Q8H3Q1"},{"id":"T14261","span":{"begin":123,"end":158},"obj":"http://identifiers.org/uniprot/Q0JAI1"},{"id":"T68566","span":{"begin":160,"end":164},"obj":"http://identifiers.org/uniprot/Q0JAI1"},{"id":"T16463","span":{"begin":273,"end":276},"obj":"http://identifiers.org/uniprot/Q8H3Q1"},{"id":"T70252","span":{"begin":395,"end":398},"obj":"http://identifiers.org/uniprot/Q8H3Q1"},{"id":"T68087","span":{"begin":417,"end":420},"obj":"http://identifiers.org/uniprot/Q8H3Q1"},{"id":"T26797","span":{"begin":581,"end":584},"obj":"http://identifiers.org/uniprot/Q8H3Q1"},{"id":"T89423","span":{"begin":618,"end":621},"obj":"http://identifiers.org/uniprot/Q0JAI1"},{"id":"T88299","span":{"begin":622,"end":626},"obj":"http://identifiers.org/uniprot/Q0JAI1"},{"id":"T3306","span":{"begin":731,"end":734},"obj":"http://identifiers.org/uniprot/Q8H3Q1"},{"id":"T36269","span":{"begin":881,"end":884},"obj":"http://identifiers.org/uniprot/Q8H3Q1"},{"id":"T84139","span":{"begin":970,"end":974},"obj":"http://identifiers.org/uniprot/Q0J466"},{"id":"T20274","span":{"begin":982,"end":989},"obj":"http://identifiers.org/uniprot/Q6EU39"},{"id":"T61858","span":{"begin":994,"end":1002},"obj":"http://identifiers.org/uniprot/Q0JAS4"},{"id":"T36552","span":{"begin":1030,"end":1037},"obj":"http://identifiers.org/uniprot/Q10PZ9"},{"id":"T62910","span":{"begin":1030,"end":1037},"obj":"http://identifiers.org/uniprot/B7EGS6"},{"id":"T74079","span":{"begin":1039,"end":1046},"obj":"http://identifiers.org/uniprot/Q0J466"},{"id":"T57123","span":{"begin":1051,"end":1058},"obj":"http://identifiers.org/uniprot/D3U2G8"},{"id":"T21","span":{"begin":1109,"end":1112},"obj":"http://identifiers.org/uniprot/Q8H3Q1"},{"id":"M_0","span":{"begin":970,"end":974},"obj":"hunflair:NA:Gene"},{"id":"M_1","span":{"begin":1030,"end":1037},"obj":"hunflair:NA:Gene"},{"id":"M_2","span":{"begin":127,"end":158},"obj":"hunflair:NA:Gene"},{"id":"M_3","span":{"begin":994,"end":1002},"obj":"hunflair:NA:Gene"},{"id":"M_4","span":{"begin":395,"end":401},"obj":"hunflair:NA:Gene"},{"id":"M_5","span":{"begin":91,"end":95},"obj":"hunflair:NA:Species"},{"id":"M_6","span":{"begin":123,"end":126},"obj":"hunflair:NA:Gene"},{"id":"M_7","span":{"begin":618,"end":621},"obj":"hunflair:NA:Gene"},{"id":"M_8","span":{"begin":19,"end":22},"obj":"hunflair:NA:Chemical"},{"id":"M_9","span":{"begin":114,"end":117},"obj":"hunflair:NA:Chemical"},{"id":"M_10","span":{"begin":273,"end":276},"obj":"hunflair:NA:Chemical"},{"id":"M_11","span":{"begin":417,"end":420},"obj":"hunflair:NA:Chemical"},{"id":"M_12","span":{"begin":581,"end":584},"obj":"hunflair:NA:Chemical"},{"id":"M_13","span":{"begin":731,"end":734},"obj":"hunflair:NA:Chemical"},{"id":"M_14","span":{"begin":881,"end":884},"obj":"hunflair:NA:Chemical"},{"id":"M_15","span":{"begin":1109,"end":1112},"obj":"hunflair:NA:Chemical"},{"id":"M_16","span":{"begin":160,"end":164},"obj":"hunflair:NA:Gene"},{"id":"M_17","span":{"begin":622,"end":626},"obj":"hunflair:NA:Gene"},{"id":"M_18","span":{"begin":982,"end":989},"obj":"hunflair:NA:Gene"},{"id":"M_19","span":{"begin":1051,"end":1058},"obj":"hunflair:NA:Gene"},{"id":"M_20","span":{"begin":97,"end":112},"obj":"hunflair:NA:Gene"},{"id":"M_21","span":{"begin":19,"end":22},"obj":"hunflair:NA:Gene"},{"id":"M_22","span":{"begin":114,"end":117},"obj":"hunflair:NA:Gene"},{"id":"M_23","span":{"begin":273,"end":276},"obj":"hunflair:NA:Gene"},{"id":"M_24","span":{"begin":417,"end":420},"obj":"hunflair:NA:Gene"},{"id":"M_25","span":{"begin":581,"end":584},"obj":"hunflair:NA:Gene"},{"id":"M_26","span":{"begin":731,"end":734},"obj":"hunflair:NA:Gene"},{"id":"M_27","span":{"begin":881,"end":884},"obj":"hunflair:NA:Gene"},{"id":"M_28","span":{"begin":1109,"end":1112},"obj":"hunflair:NA:Gene"},{"id":"M_29","span":{"begin":1039,"end":1046},"obj":"hunflair:NA:Gene"}],"text":"Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.\nFRIZZLE PANICLE (FZP) and RFL/ABERRANT PANICLE ORGANIZATION 2 (APO2) play important roles in regulating the ABCDE floral organ identity genes. However, the relationships among FZP and these floral identity genes in the regulation of panicle formation remain unclear. Here, we used the novel mutant fzp-11, wild-type and FZP-overexpressing plants to compare the expression of these genes during panicle development by real-time PCR and in situ hybridization. The results indicate that FZP is a major negative regulator of RFL/APO2 and determines the transition from panicle branching to spikelet formation. Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle. FZP overexpression positively regulates the expression of a subset of the class B genes, AGL6 genes (OsMADS6 and OsMADS17) as well as class E genes (OsMADS1, OsMADS7 and OsMADS8) in floral meristem (FM). Thus, it suggested that FZP could specify floral organ identity by regulating the related OsMADS-box genes."}

    OryzaGP

    {"project":"OryzaGP","denotations":[{"id":"T1","span":{"begin":97,"end":112},"obj":"gene"},{"id":"T2","span":{"begin":1175,"end":1181},"obj":"gene"}],"text":"Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.\nFRIZZLE PANICLE (FZP) and RFL/ABERRANT PANICLE ORGANIZATION 2 (APO2) play important roles in regulating the ABCDE floral organ identity genes. However, the relationships among FZP and these floral identity genes in the regulation of panicle formation remain unclear. Here, we used the novel mutant fzp-11, wild-type and FZP-overexpressing plants to compare the expression of these genes during panicle development by real-time PCR and in situ hybridization. The results indicate that FZP is a major negative regulator of RFL/APO2 and determines the transition from panicle branching to spikelet formation. Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle. FZP overexpression positively regulates the expression of a subset of the class B genes, AGL6 genes (OsMADS6 and OsMADS17) as well as class E genes (OsMADS1, OsMADS7 and OsMADS8) in floral meristem (FM). Thus, it suggested that FZP could specify floral organ identity by regulating the related OsMADS-box genes."}

    Anatomy-MAT

    {"project":"Anatomy-MAT","denotations":[{"id":"T1","span":{"begin":763,"end":771},"obj":"Body_part"},{"id":"T2","span":{"begin":1070,"end":1078},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"mat_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MAT_0000006"},{"id":"A2","pred":"mat_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MAT_0000006"}],"text":"Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.\nFRIZZLE PANICLE (FZP) and RFL/ABERRANT PANICLE ORGANIZATION 2 (APO2) play important roles in regulating the ABCDE floral organ identity genes. However, the relationships among FZP and these floral identity genes in the regulation of panicle formation remain unclear. Here, we used the novel mutant fzp-11, wild-type and FZP-overexpressing plants to compare the expression of these genes during panicle development by real-time PCR and in situ hybridization. The results indicate that FZP is a major negative regulator of RFL/APO2 and determines the transition from panicle branching to spikelet formation. Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle. FZP overexpression positively regulates the expression of a subset of the class B genes, AGL6 genes (OsMADS6 and OsMADS17) as well as class E genes (OsMADS1, OsMADS7 and OsMADS8) in floral meristem (FM). Thus, it suggested that FZP could specify floral organ identity by regulating the related OsMADS-box genes."}

    NCBITAXON

    {"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":91,"end":95},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"4530"}],"text":"Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.\nFRIZZLE PANICLE (FZP) and RFL/ABERRANT PANICLE ORGANIZATION 2 (APO2) play important roles in regulating the ABCDE floral organ identity genes. However, the relationships among FZP and these floral identity genes in the regulation of panicle formation remain unclear. Here, we used the novel mutant fzp-11, wild-type and FZP-overexpressing plants to compare the expression of these genes during panicle development by real-time PCR and in situ hybridization. The results indicate that FZP is a major negative regulator of RFL/APO2 and determines the transition from panicle branching to spikelet formation. Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle. FZP overexpression positively regulates the expression of a subset of the class B genes, AGL6 genes (OsMADS6 and OsMADS17) as well as class E genes (OsMADS1, OsMADS7 and OsMADS8) in floral meristem (FM). Thus, it suggested that FZP could specify floral organ identity by regulating the related OsMADS-box genes."}

    Anatomy-UBERON

    {"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":218,"end":223},"obj":"Body_part"},{"id":"T3","span":{"begin":1134,"end":1139},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0000062"},{"id":"A2","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0003103"},{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0000062"},{"id":"A4","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0003103"}],"text":"Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.\nFRIZZLE PANICLE (FZP) and RFL/ABERRANT PANICLE ORGANIZATION 2 (APO2) play important roles in regulating the ABCDE floral organ identity genes. However, the relationships among FZP and these floral identity genes in the regulation of panicle formation remain unclear. Here, we used the novel mutant fzp-11, wild-type and FZP-overexpressing plants to compare the expression of these genes during panicle development by real-time PCR and in situ hybridization. The results indicate that FZP is a major negative regulator of RFL/APO2 and determines the transition from panicle branching to spikelet formation. Moreover, overexpression of FZP severely represses axillary meristem formation in both the vegetative and reproductive phases and the outgrowth of secondary branches in panicle. FZP overexpression positively regulates the expression of a subset of the class B genes, AGL6 genes (OsMADS6 and OsMADS17) as well as class E genes (OsMADS1, OsMADS7 and OsMADS8) in floral meristem (FM). Thus, it suggested that FZP could specify floral organ identity by regulating the related OsMADS-box genes."}