PubMed:26684240
Annnotations
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 10971 | 22-26 | GeneOrGeneProduct | denotes | BRAF | NCBIGene:673 |
| 10972 | 27-32 | SequenceVariant | denotes | V600E | DBSNP:rs113488022 |
| 10973 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors | MESH:C535650 |
| 10974 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors | MESH:C535650 |
| 10975 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | MESH:C535650 |
| 10976 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | MESH:C535650 |
| 10977 | 348-356 | OrganismTaxon | denotes | patients | NCBITaxon:9606 |
| 10978 | 433-442 | ChemicalEntity | denotes | pazopanib | MESH:C516667 |
| 10979 | 536-550 | DiseaseOrPhenotypicFeature | denotes | intestine NETs | MESH:D007414 |
| 10980 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | MESH:C535650 |
| 10981 | 702-708 | DiseaseOrPhenotypicFeature | denotes | cancer | MESH:D009369 |
| 10982 | 733-737 | GeneOrGeneProduct | denotes | TP53 | NCBIGene:7157 |
| 10983 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 | NCBIGene:168975 |
| 10984 | 746-749 | GeneOrGeneProduct | denotes | RB1 | NCBIGene:5925 |
| 10985 | 751-754 | GeneOrGeneProduct | denotes | APC | NCBIGene:324 |
| 10986 | 756-760 | GeneOrGeneProduct | denotes | BCOR | NCBIGene:54880 |
| 10987 | 762-766 | GeneOrGeneProduct | denotes | BRAF | NCBIGene:673 |
| 10988 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 | NCBIGene:1499 |
| 10989 | 776-780 | GeneOrGeneProduct | denotes | EGFR | NCBIGene:1956 |
| 10990 | 782-787 | GeneOrGeneProduct | denotes | EP300 | NCBIGene:2033 |
| 10991 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 | NCBIGene:2065 |
| 10992 | 796-801 | GeneOrGeneProduct | denotes | KDM6A | NCBIGene:7403 |
| 10993 | 803-807 | GeneOrGeneProduct | denotes | KRAS | NCBIGene:3845 |
| 10994 | 809-812 | GeneOrGeneProduct | denotes | MGA | NCBIGene:23269 |
| 10995 | 814-818 | GeneOrGeneProduct | denotes | MLL3 | NCBIGene:58508 |
| 10996 | 820-824 | GeneOrGeneProduct | denotes | PTEN | NCBIGene:5728 |
| 10997 | 826-831 | GeneOrGeneProduct | denotes | RASA1 | NCBIGene:5921 |
| 10998 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 | NCBIGene:6598 |
| 10999 | 842-846 | GeneOrGeneProduct | denotes | SPEN | NCBIGene:23013 |
| 11000 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 | NCBIGene:23232 |
| 11001 | 861-864 | GeneOrGeneProduct | denotes | VHL | NCBIGene:7428 |
| 11002 | 866-870 | GeneOrGeneProduct | denotes | TP53 | NCBIGene:7157 |
| 11003 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 | NCBIGene:168975 |
| 11004 | 929-932 | GeneOrGeneProduct | denotes | RB1 | NCBIGene:5925 |
| 11005 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET | MESH:C535650 |
| 11006 | 987-995 | OrganismTaxon | denotes | patients | NCBITaxon:9606 |
| 11007 | 1001-1005 | GeneOrGeneProduct | denotes | TP53 | NCBIGene:7157 |
| 11008 | 1062-1088 | DiseaseOrPhenotypicFeature | denotes | intestinal grade (G) 1 NET | MESH:D007414 |
| 11009 | 1089-1096 | OrganismTaxon | denotes | patient | NCBITaxon:9606 |
| 11010 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF | NCBIGene:673 |
| 11011 | 1107-1112 | SequenceVariant | denotes | V600E | DBSNP:rs113488022 |
| 11012 | 1147-1156 | ChemicalEntity | denotes | pazopanib | MESH:C516667 |
| 11013 | 1177-1181 | GeneOrGeneProduct | denotes | BRAF | NCBIGene:673 |
| 11014 | 1182-1187 | SequenceVariant | denotes | V600E | DBSNP:rs113488022 |
| 11015 | 1192-1195 | DiseaseOrPhenotypicFeature | denotes | NET | MESH:D018358 |
| 11016 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs | MESH:D018358 |
| 11017 | 1240-1244 | GeneOrGeneProduct | denotes | BRAF | NCBIGene:673 |
| 11018 | 1245-1250 | SequenceVariant | denotes | G593S | p.G593S |
| 11019 | 1255-1258 | DiseaseOrPhenotypicFeature | denotes | NET | MESH:D018358 |
| 11020 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | MESH:C535650 |
| 11021 | 1487-1492 | DiseaseOrPhenotypicFeature | denotes | tumor | MESH:D009369 |
| 11022 | 1553-1557 | GeneOrGeneProduct | denotes | BRAF | NCBIGene:673 |
| 11023 | 1558-1563 | SequenceVariant | denotes | V600E | DBSNP:rs113488022 |
| 11024 | 1610-1619 | ChemicalEntity | denotes | pazopanib | MESH:C516667 |
| 11025 | 1681-1689 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | MESH:C535650 |
| 11026 | 1690-1698 | OrganismTaxon | denotes | patients | NCBITaxon:9606 |
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-90 | Sentence | denotes | Identification of the BRAF V600E mutation in gastroenteropancreatic neuroendocrine tumors. |
| T2 | 91-285 | Sentence | denotes | Genomic profiles of gastroenteropancreatic neuroendocrine tumors (GEP-NETs) are still insufficiently understood, and the genetic alterations associated with drug responses have not been studied. |
| T3 | 286-560 | Sentence | denotes | Here, we performed whole exome sequencing of 12 GEP-NETs from patients enrolled in a nonrandomized, open-labeled, single-center phase II study for pazopanib, and integrated our results with previously published results on pancreas (n = 12) and small intestine NETs (n = 50). |
| T4 | 561-642 | Sentence | denotes | The mean numbers of somatic mutations in each case varied widely from 20 to 4682. |
| T5 | 643-865 | Sentence | denotes | Among 12 GEP-NETs, eight showed mutations of more than one cancer-related gene, including TP53, CNBD1, RB1, APC, BCOR, BRAF, CTNNB1, EGFR, EP300, ERBB3, KDM6A, KRAS, MGA, MLL3, PTEN, RASA1, SMARCB1, SPEN, TBC1D12, and VHL. |
| T6 | 866-972 | Sentence | denotes | TP53 was recurrently mutated in three cases, whereas CNBD1 and RB1 mutations were identified in two cases. |
| T7 | 973-1167 | Sentence | denotes | Three GEP-NET patients with TP53 mutations demonstrated a durable response and one small intestinal grade (G) 1 NET patient with BRAF V600E mutation showed progression after pazopanib treatment. |
| T8 | 1168-1482 | Sentence | denotes | We found BRAF V600E (G1 NET from rectum and two G3 NETs from colon) and BRAF G593S (G2 NET from pancreas) missense mutations (9.1%) in an independent cohort of 44 GEP-NETs from the rectum (n = 26), colon (n = 7), pancreas (n = 4), small intestine (n = 3), stomach (n = 3) and appendix (n = 1) by Sanger sequencing. |
| T9 | 1483-1537 | Sentence | denotes | All tumor specimens were obtained before chemotherapy. |
| T10 | 1538-1699 | Sentence | denotes | In conclusion, BRAF V600E mutation is likely to result in resistance to pazopanib but may be a potentianally actionable mutation in metastatic GEP-NETs patients. |
LitCoin_Mondo
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 702-708 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
LitCoin-SeqVar
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 27-32 | SequenceVariant | denotes | V600E |
| T2 | 1107-1112 | SequenceVariant | denotes | V600E |
| T3 | 1182-1187 | SequenceVariant | denotes | V600E |
| T4 | 1245-1250 | SequenceVariant | denotes | G593S |
| T5 | 1558-1563 | SequenceVariant | denotes | V600E |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 530-535 | GeneOrGeneProduct | denotes | small |
| T3 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T4 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T5 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T6 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T7 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T8 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T9 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T10 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T11 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T12 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T13 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T14 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T15 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T16 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T17 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T18 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T19 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T20 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T21 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 |
| T22 | 929-932 | GeneOrGeneProduct | denotes | RB1 |
| T23 | 983-986 | GeneOrGeneProduct | denotes | NET |
| T24 | 1001-1005 | GeneOrGeneProduct | denotes | TP53 |
| T25 | 1056-1061 | GeneOrGeneProduct | denotes | small |
| T26 | 1062-1072 | GeneOrGeneProduct | denotes | intestinal |
| T27 | 1085-1088 | GeneOrGeneProduct | denotes | NET |
| T28 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF |
| T29 | 1177-1181 | GeneOrGeneProduct | denotes | BRAF |
| T30 | 1192-1195 | GeneOrGeneProduct | denotes | NET |
| T31 | 1240-1244 | GeneOrGeneProduct | denotes | BRAF |
| T32 | 1255-1258 | GeneOrGeneProduct | denotes | NET |
| T33 | 1399-1404 | GeneOrGeneProduct | denotes | small |
| T34 | 1553-1557 | GeneOrGeneProduct | denotes | BRAF |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 33-41 | GeneOrGeneProduct | denotes | mutation |
| T3 | 83-89 | GeneOrGeneProduct | denotes | tumors |
| T4 | 149-155 | GeneOrGeneProduct | denotes | tumors |
| T5 | 161-165 | GeneOrGeneProduct | denotes | NETs |
| T6 | 311-316 | GeneOrGeneProduct | denotes | exome |
| T7 | 338-342 | GeneOrGeneProduct | denotes | NETs |
| T8 | 366-370 | GeneOrGeneProduct | denotes | in a |
| T9 | 386-390 | GeneOrGeneProduct | denotes | open |
| T10 | 420-422 | GeneOrGeneProduct | denotes | II |
| T11 | 518-524 | GeneOrGeneProduct | denotes | n = 12 |
| T12 | 530-535 | GeneOrGeneProduct | denotes | small |
| T13 | 536-545 | GeneOrGeneProduct | denotes | intestine |
| T14 | 546-550 | GeneOrGeneProduct | denotes | NETs |
| T15 | 552-558 | GeneOrGeneProduct | denotes | n = 50 |
| T16 | 589-598 | GeneOrGeneProduct | denotes | mutations |
| T17 | 607-611 | GeneOrGeneProduct | denotes | case |
| T18 | 612-618 | GeneOrGeneProduct | denotes | varied |
| T19 | 656-660 | GeneOrGeneProduct | denotes | NETs |
| T20 | 675-684 | GeneOrGeneProduct | denotes | mutations |
| T21 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T22 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T23 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T24 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T25 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T26 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T27 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T28 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T29 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T30 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T31 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T32 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T33 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T34 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T35 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T36 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T37 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T38 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T39 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T40 | 887-894 | GeneOrGeneProduct | denotes | mutated |
| T41 | 904-909 | GeneOrGeneProduct | denotes | cases |
| T42 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 |
| T43 | 929-932 | GeneOrGeneProduct | denotes | RB1 |
| T44 | 933-942 | GeneOrGeneProduct | denotes | mutations |
| T45 | 966-971 | GeneOrGeneProduct | denotes | cases |
| T46 | 983-986 | GeneOrGeneProduct | denotes | NET |
| T47 | 1001-1005 | GeneOrGeneProduct | denotes | TP53 |
| T48 | 1006-1015 | GeneOrGeneProduct | denotes | mutations |
| T49 | 1056-1061 | GeneOrGeneProduct | denotes | small |
| T50 | 1062-1072 | GeneOrGeneProduct | denotes | intestinal |
| T51 | 1085-1088 | GeneOrGeneProduct | denotes | NET |
| T52 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF |
| T53 | 1113-1121 | GeneOrGeneProduct | denotes | mutation |
| T54 | 1177-1181 | GeneOrGeneProduct | denotes | BRAF |
| T55 | 1192-1195 | GeneOrGeneProduct | denotes | NET |
| T56 | 1216-1218 | GeneOrGeneProduct | denotes | G3 |
| T57 | 1219-1223 | GeneOrGeneProduct | denotes | NETs |
| T58 | 1240-1244 | GeneOrGeneProduct | denotes | BRAF |
| T59 | 1255-1258 | GeneOrGeneProduct | denotes | NET |
| T60 | 1274-1282 | GeneOrGeneProduct | denotes | missense |
| T61 | 1283-1292 | GeneOrGeneProduct | denotes | mutations |
| T62 | 1335-1339 | GeneOrGeneProduct | denotes | NETs |
| T63 | 1357-1363 | GeneOrGeneProduct | denotes | n = 26 |
| T64 | 1399-1404 | GeneOrGeneProduct | denotes | small |
| T65 | 1405-1414 | GeneOrGeneProduct | denotes | intestine |
| T66 | 1483-1486 | GeneOrGeneProduct | denotes | All |
| T67 | 1487-1492 | GeneOrGeneProduct | denotes | tumor |
| T68 | 1553-1557 | GeneOrGeneProduct | denotes | BRAF |
| T69 | 1564-1572 | GeneOrGeneProduct | denotes | mutation |
| T70 | 1576-1582 | GeneOrGeneProduct | denotes | likely |
| T71 | 1624-1632 | GeneOrGeneProduct | denotes | may be a |
| T72 | 1658-1666 | GeneOrGeneProduct | denotes | mutation |
| T73 | 1685-1689 | GeneOrGeneProduct | denotes | NETs |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T1 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors | C535650 |
| T2 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors | C535650 |
| T3 | 702-708 | DiseaseOrPhenotypicFeature | denotes | cancer | D009369 |
| T4 | 875-886 | DiseaseOrPhenotypicFeature | denotes | recurrently | D012008 |
| T5 | 1487-1492 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T3 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T4 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T5 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T6 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T7 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T8 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T9 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T10 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T11 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T12 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T13 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T14 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T15 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T16 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T17 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T18 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T19 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T20 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 |
| T21 | 929-932 | GeneOrGeneProduct | denotes | RB1 |
| T22 | 983-986 | GeneOrGeneProduct | denotes | NET |
| T23 | 1001-1005 | GeneOrGeneProduct | denotes | TP53 |
| T24 | 1085-1088 | GeneOrGeneProduct | denotes | NET |
| T25 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF |
| T26 | 1177-1181 | GeneOrGeneProduct | denotes | BRAF |
| T27 | 1192-1195 | GeneOrGeneProduct | denotes | NET |
| T28 | 1240-1244 | GeneOrGeneProduct | denotes | BRAF |
| T29 | 1255-1258 | GeneOrGeneProduct | denotes | NET |
| T30 | 1553-1557 | GeneOrGeneProduct | denotes | BRAF |
LitCoin_Mondo_095
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors | 0000386 |
| T2 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors | 0000386 |
| T3 | 508-516 | DiseaseOrPhenotypicFeature | denotes | pancreas | 0021040 |
| T4 | 530-550 | DiseaseOrPhenotypicFeature | denotes | small intestine NETs | 0018510 |
| T5 | 746-749 | DiseaseOrPhenotypicFeature | denotes | RB1 | 0018160 |
| T6 | 861-864 | DiseaseOrPhenotypicFeature | denotes | VHL | 0008667 |
| T7 | 929-932 | DiseaseOrPhenotypicFeature | denotes | RB1 | 0018160 |
| T8 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET | 0024503 |
| T9 | 1264-1272 | DiseaseOrPhenotypicFeature | denotes | pancreas | 0021040 |
| T10 | 1381-1389 | DiseaseOrPhenotypicFeature | denotes | pancreas | 0021040 |
| T11 | 1487-1492 | DiseaseOrPhenotypicFeature | denotes | tumor | 0005070 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors | C535650 |
| T2 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors | C535650 |
| T3 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE |
| T4 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE |
| T5 | 536-550 | DiseaseOrPhenotypicFeature | denotes | intestine NETs | DISEASE |
| T6 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE |
| T7 | 702-708 | DiseaseOrPhenotypicFeature | denotes | cancer | D009369 |
| T8 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET | DISEASE |
| T9 | 1062-1088 | DiseaseOrPhenotypicFeature | denotes | intestinal grade (G) 1 NET | DISEASE |
| T10 | 1192-1195 | DiseaseOrPhenotypicFeature | denotes | NET | DISEASE |
| T11 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs | DISEASE |
| T12 | 1255-1258 | DiseaseOrPhenotypicFeature | denotes | NET | DISEASE |
| T13 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE |
| T14 | 1487-1492 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
| T15 | 1681-1689 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T1 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors | C535650 |
| T2 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors | C535650 |
| T3 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE |
| T4 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE |
| T5 | 536-550 | DiseaseOrPhenotypicFeature | denotes | intestine NETs | DISEASE |
| T6 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE |
| T7 | 702-708 | DiseaseOrPhenotypicFeature | denotes | cancer | D009369 |
| T8 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET | DISEASE |
| T9 | 1062-1088 | DiseaseOrPhenotypicFeature | denotes | intestinal grade (G) 1 NET | DISEASE |
| T10 | 1192-1195 | DiseaseOrPhenotypicFeature | denotes | NET | DISEASE |
| T11 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs | DISEASE |
| T12 | 1255-1258 | DiseaseOrPhenotypicFeature | denotes | NET | DISEASE |
| T13 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE |
| T14 | 1487-1492 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 |
| T15 | 1681-1689 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE |
LitCoin-Chemical-MeSH-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 433-442 | ChemicalEntity | denotes | pazopanib | C516667|http://purl.obolibrary.org/obo/CHEBI_71219 |
| T3 | 1147-1156 | ChemicalEntity | denotes | pazopanib | C516667|http://purl.obolibrary.org/obo/CHEBI_71219 |
| T5 | 1610-1619 | ChemicalEntity | denotes | pazopanib | C516667|http://purl.obolibrary.org/obo/CHEBI_71219 |
LitCoin-NCBITaxon-2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 348-356 | OrganismTaxon | denotes | patients |
| T2 | 987-995 | OrganismTaxon | denotes | patients |
| T3 | 1089-1096 | OrganismTaxon | denotes | patient |
| T4 | 1690-1698 | OrganismTaxon | denotes | patients |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label | ID: |
|---|---|---|---|---|---|---|
| T5 | 1610-1619 | ChemicalEntity | denotes | pazopanib | http://purl.obolibrary.org/obo/CHEBI_71219|C516667 | |
| T3 | 1147-1156 | ChemicalEntity | denotes | pazopanib | http://purl.obolibrary.org/obo/CHEBI_71219|C516667 | |
| T1 | 433-442 | ChemicalEntity | denotes | pazopanib | http://purl.obolibrary.org/obo/CHEBI_71219|C516667 | |
| T30 | 1553-1557 | GeneOrGeneProduct | denotes | BRAF | ||
| T29 | 1255-1258 | GeneOrGeneProduct | denotes | NET | ||
| T28 | 1240-1244 | GeneOrGeneProduct | denotes | BRAF | ||
| T27 | 1192-1195 | GeneOrGeneProduct | denotes | NET | ||
| T26 | 1177-1181 | GeneOrGeneProduct | denotes | BRAF | ||
| T25 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF | ||
| T24 | 1085-1088 | GeneOrGeneProduct | denotes | NET | ||
| T23 | 1001-1005 | GeneOrGeneProduct | denotes | TP53 | ||
| T22 | 983-986 | GeneOrGeneProduct | denotes | NET | ||
| T21 | 929-932 | GeneOrGeneProduct | denotes | RB1 | ||
| T20 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 | ||
| T19 | 866-870 | GeneOrGeneProduct | denotes | TP53 | ||
| T18 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 | ||
| T17 | 842-846 | GeneOrGeneProduct | denotes | SPEN | ||
| T16 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 | ||
| T15 | 826-831 | GeneOrGeneProduct | denotes | RASA1 | ||
| T14 | 820-824 | GeneOrGeneProduct | denotes | PTEN | ||
| T13 | 814-818 | GeneOrGeneProduct | denotes | MLL3 | ||
| T12 | 803-807 | GeneOrGeneProduct | denotes | KRAS | ||
| T11 | 796-801 | GeneOrGeneProduct | denotes | KDM6A | ||
| T10 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 | ||
| T9 | 782-787 | GeneOrGeneProduct | denotes | EP300 | ||
| T8 | 776-780 | GeneOrGeneProduct | denotes | EGFR | ||
| T7 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 | ||
| T6 | 762-766 | GeneOrGeneProduct | denotes | BRAF | ||
| T42858 | 756-760 | GeneOrGeneProduct | denotes | BCOR | ||
| T4 | 746-749 | GeneOrGeneProduct | denotes | RB1 | ||
| T59666 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 | ||
| T2 | 733-737 | GeneOrGeneProduct | denotes | TP53 | ||
| T14026 | 22-26 | GeneOrGeneProduct | denotes | BRAF | ||
| T21549 | 1681-1689 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE | |
| T34971 | 1487-1492 | DiseaseOrPhenotypicFeature | denotes | tumor | D009369 | |
| T51763 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE | |
| T89093 | 1255-1258 | DiseaseOrPhenotypicFeature | denotes | NET | DISEASE | |
| T17041 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs | DISEASE | |
| T54477 | 1192-1195 | DiseaseOrPhenotypicFeature | denotes | NET | DISEASE | |
| T48673 | 1062-1088 | DiseaseOrPhenotypicFeature | denotes | intestinal grade (G) 1 NET | DISEASE | |
| T20286 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET | DISEASE | |
| T84367 | 702-708 | DiseaseOrPhenotypicFeature | denotes | cancer | D009369 | |
| T64672 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE | |
| T20728 | 536-550 | DiseaseOrPhenotypicFeature | denotes | intestine NETs | DISEASE | |
| T93864 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE | |
| T82078 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs | DISEASE | |
| T32171 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors | C535650 | |
| T65925 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors | C535650 | |
| T14368 | 1690-1698 | OrganismTaxon | denotes | patients | ||
| T57822 | 1089-1096 | OrganismTaxon | denotes | patient | ||
| T87458 | 987-995 | OrganismTaxon | denotes | patients | ||
| T66225 | 348-356 | OrganismTaxon | denotes | patients | ||
| T53888 | 1558-1563 | SequenceVariant | denotes | V600E | ||
| T54782 | 1245-1250 | SequenceVariant | denotes | G593S | ||
| T91746 | 1182-1187 | SequenceVariant | denotes | V600E | ||
| T55890 | 1107-1112 | SequenceVariant | denotes | V600E | ||
| T99552 | 27-32 | SequenceVariant | denotes | V600E |
DisGeNET5_variant_disease
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 26684240-0#27#32#geners113488022 | 27-32 | geners113488022 | denotes | V600E |
| 26684240-0#68#89#diseaseC0206754 | 68-89 | diseaseC0206754 | denotes | neuroendocrine tumors |
| 27#32#geners11348802268#89#diseaseC0206754 | 26684240-0#27#32#geners113488022 | 26684240-0#68#89#diseaseC0206754 | associated_with | V600E,neuroendocrine tumors |
DisGeNET5_gene_disease
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 26684240-0#22#26#gene673 | 22-26 | gene673 | denotes | BRAF |
| 26684240-0#68#89#diseaseC0206754 | 68-89 | diseaseC0206754 | denotes | neuroendocrine tumors |
| 22#26#gene67368#89#diseaseC0206754 | 26684240-0#22#26#gene673 | 26684240-0#68#89#diseaseC0206754 | associated_with | BRAF,neuroendocrine tumors |
biored-valid
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 27-32 | SequenceVariant | denotes | V600E |
| T3 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T5 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T6 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T7 | 348-356 | OrganismTaxon | denotes | patients |
| T8 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T9 | 536-550 | DiseaseOrPhenotypicFeature | denotes | intestine NETs |
| T10 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T11 | 702-708 | DiseaseOrPhenotypicFeature | denotes | cancer |
| T12 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T13 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T14 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T15 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T16 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T17 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T18 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T19 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T20 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T21 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T22 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T23 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T24 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T25 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T26 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T27 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T28 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T29 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T30 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T31 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T32 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T33 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 |
| T34 | 929-932 | GeneOrGeneProduct | denotes | RB1 |
| T35 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET |
| T36 | 987-995 | OrganismTaxon | denotes | patients |
| T37 | 1001-1005 | GeneOrGeneProduct | denotes | TP53 |
| T38 | 1062-1088 | DiseaseOrPhenotypicFeature | denotes | intestinal grade (G) 1 NET |
| T39 | 1089-1096 | OrganismTaxon | denotes | patient |
| T40 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF |
| T41 | 1107-1112 | SequenceVariant | denotes | V600E |
| T42 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T43 | 1177-1181 | GeneOrGeneProduct | denotes | BRAF |
| T44 | 1182-1187 | SequenceVariant | denotes | V600E |
| T45 | 1192-1195 | DiseaseOrPhenotypicFeature | denotes | NET |
| T46 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T47 | 1240-1244 | GeneOrGeneProduct | denotes | BRAF |
| T48 | 1245-1250 | SequenceVariant | denotes | G593S |
| T49 | 1255-1258 | DiseaseOrPhenotypicFeature | denotes | NET |
| T50 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T51 | 1487-1492 | DiseaseOrPhenotypicFeature | denotes | tumor |
| T52 | 1553-1557 | GeneOrGeneProduct | denotes | BRAF |
| T53 | 1558-1563 | SequenceVariant | denotes | V600E |
| T54 | 1610-1619 | ChemicalEntity | denotes | pazopanib |
| T55 | 1681-1689 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T56 | 1690-1698 | OrganismTaxon | denotes | patients |
biored-valid-deepseek-nr-ng
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 27-32 | SequenceVariant | denotes | V600E |
| T3 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 157-160 | DiseaseOrPhenotypicFeature | denotes | GEP |
| T5 | 161-165 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T6 | 338-342 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T7 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T8 | 546-549 | DiseaseOrPhenotypicFeature | denotes | NET |
| T9 | 652-655 | DiseaseOrPhenotypicFeature | denotes | GEP |
| T10 | 656-659 | DiseaseOrPhenotypicFeature | denotes | NET |
| T11 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T12 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T13 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T14 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T15 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T16 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T17 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T18 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T19 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T20 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T21 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T22 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T23 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T24 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T25 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T26 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T27 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T28 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T29 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T30 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T31 | 979-982 | DiseaseOrPhenotypicFeature | denotes | GEP |
| T32 | 1107-1112 | SequenceVariant | denotes | V600E |
| T33 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T34 | 1245-1250 | SequenceVariant | denotes | G593S |
biored-valid-deepseek-nr-g
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-32 | SequenceVariant | denotes | BRAF V600E |
| T2 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T3 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T4 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T5 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T6 | 508-516 | OrganismTaxon | denotes | pancreas |
| T7 | 530-545 | OrganismTaxon | denotes | small intestine |
| T8 | 546-550 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T9 | 656-660 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T10 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T11 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T12 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T13 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T14 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T15 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T16 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T17 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T18 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T19 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T20 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T21 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T22 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T23 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T24 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T25 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T26 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T27 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T28 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T29 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T30 | 983-986 | DiseaseOrPhenotypicFeature | denotes | NET |
| T31 | 1102-1112 | SequenceVariant | denotes | BRAF V600E |
| T32 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T33 | 1177-1187 | SequenceVariant | denotes | BRAF V600E |
| T34 | 1201-1207 | OrganismTaxon | denotes | rectum |
| T35 | 1229-1234 | OrganismTaxon | denotes | colon |
| T36 | 1240-1250 | SequenceVariant | denotes | BRAF G593S |
| T37 | 1264-1272 | OrganismTaxon | denotes | pancreas |
| T38 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T39 | 1399-1414 | OrganismTaxon | denotes | small intestine |
| T40 | 1424-1431 | OrganismTaxon | denotes | stomach |
| T41 | 1444-1452 | OrganismTaxon | denotes | appendix |
biored-valid-deepseek-r-ng
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-32 | SequenceVariant | denotes | BRAF V600E |
| T2 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T3 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T4 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T5 | 530-550 | DiseaseOrPhenotypicFeature | denotes | small intestine NETs |
| T6 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T7 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T8 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T9 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T10 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T11 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T12 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T13 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T14 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T15 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T16 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T17 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T18 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T19 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T20 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T21 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T22 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T23 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T24 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T25 | 1102-1112 | SequenceVariant | denotes | BRAF V600E |
| T26 | 1240-1250 | SequenceVariant | denotes | BRAF G593S |
| T27 | 1670-1689 | DiseaseOrPhenotypicFeature | denotes | metastatic GEP-NETs |
biored-valid-deepseek-r-g
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 27-32 | SequenceVariant | denotes | V600E |
| T3 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T5 | 212-216 | DiseaseOrPhenotypicFeature | denotes | gene |
| T6 | 338-342 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T7 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T8 | 656-659 | DiseaseOrPhenotypicFeature | denotes | NET |
| T9 | 702-708 | DiseaseOrPhenotypicFeature | denotes | cancer |
| T10 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T11 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T12 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T13 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T14 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T15 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T16 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T17 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T18 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T19 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T20 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T21 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T22 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T23 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T24 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T25 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T26 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T27 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T28 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T29 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T30 | 983-986 | DiseaseOrPhenotypicFeature | denotes | NET |
| T31 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF |
| T32 | 1107-1112 | SequenceVariant | denotes | V600E |
| T33 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T34 | 1245-1250 | SequenceVariant | denotes | G593S |
| T35 | 1487-1492 | DiseaseOrPhenotypicFeature | denotes | tumor |
| T36 | 1670-1689 | DiseaseOrPhenotypicFeature | denotes | metastatic GEP-NETs |
biored-valid-gemini-nr-ng
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 27-32 | SequenceVariant | denotes | V600E |
| T3 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T5 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T6 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T7 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T8 | 546-550 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T9 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T10 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T11 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T12 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T13 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T14 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T15 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T16 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T17 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T18 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T19 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T20 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T21 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T22 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T23 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T24 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T25 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T26 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T27 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T28 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T29 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T30 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T31 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET |
| T32 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF |
| T33 | 1107-1112 | SequenceVariant | denotes | V600E |
| T34 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T35 | 1182-1187 | SequenceVariant | denotes | V600E |
| T36 | 1189-1195 | DiseaseOrPhenotypicFeature | denotes | G1 NET |
| T37 | 1216-1223 | DiseaseOrPhenotypicFeature | denotes | G3 NETs |
| T38 | 1240-1244 | GeneOrGeneProduct | denotes | BRAF |
| T39 | 1245-1250 | SequenceVariant | denotes | G593S |
| T40 | 1252-1258 | DiseaseOrPhenotypicFeature | denotes | G2 NET |
| T41 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
biored-valid-gemini-r-ng
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 27-32 | SequenceVariant | denotes | V600E |
| T3 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T5 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T6 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T7 | 530-550 | DiseaseOrPhenotypicFeature | denotes | small intestine NETs |
| T8 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T9 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T10 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T11 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T12 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T13 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T14 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T15 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T16 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T17 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T18 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T19 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T20 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T21 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T22 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T23 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T24 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T25 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T26 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T27 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T28 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T29 | 1056-1088 | DiseaseOrPhenotypicFeature | denotes | small intestinal grade (G) 1 NET |
| T30 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF |
| T31 | 1107-1112 | SequenceVariant | denotes | V600E |
| T32 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T33 | 1182-1187 | SequenceVariant | denotes | V600E |
| T34 | 1189-1195 | DiseaseOrPhenotypicFeature | denotes | G1 NET |
| T35 | 1216-1223 | DiseaseOrPhenotypicFeature | denotes | G3 NETs |
| T36 | 1240-1244 | GeneOrGeneProduct | denotes | BRAF |
| T37 | 1245-1250 | SequenceVariant | denotes | G593S |
| T38 | 1252-1258 | DiseaseOrPhenotypicFeature | denotes | G2 NET |
| T39 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T40 | 1524-1536 | ChemicalEntity | denotes | chemotherapy |
| T41 | 1670-1689 | DiseaseOrPhenotypicFeature | denotes | metastatic GEP-NETs |
biored-valid-gemini-r-g
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 27-32 | SequenceVariant | denotes | V600E |
| T3 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 111-166 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors (GEP-NETs) |
| T5 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T6 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T7 | 546-550 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T8 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T9 | 702-708 | DiseaseOrPhenotypicFeature | denotes | cancer |
| T10 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T11 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T12 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T13 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T14 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T15 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T16 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T17 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T18 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T19 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T20 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T21 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T22 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T23 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T24 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T25 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T26 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T27 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T28 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T29 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T30 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T31 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 |
| T32 | 929-932 | GeneOrGeneProduct | denotes | RB1 |
| T33 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET |
| T34 | 1001-1005 | GeneOrGeneProduct | denotes | TP53 |
| T35 | 1085-1088 | DiseaseOrPhenotypicFeature | denotes | NET |
| T36 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF |
| T37 | 1107-1112 | SequenceVariant | denotes | V600E |
| T38 | 1129-1140 | DiseaseOrPhenotypicFeature | denotes | progression |
| T39 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T40 | 1177-1181 | GeneOrGeneProduct | denotes | BRAF |
| T41 | 1192-1195 | DiseaseOrPhenotypicFeature | denotes | NET |
| T42 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T43 | 1245-1250 | SequenceVariant | denotes | G593S |
| T44 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T45 | 1553-1557 | GeneOrGeneProduct | denotes | BRAF |
| T46 | 1558-1563 | SequenceVariant | denotes | V600E |
| T47 | 1596-1619 | DiseaseOrPhenotypicFeature | denotes | resistance to pazopanib |
| T48 | 1670-1680 | DiseaseOrPhenotypicFeature | denotes | metastatic |
| T49 | 1681-1689 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
biored-valid-gpt-nr-ng
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 27-32 | SequenceVariant | denotes | V600E |
| T3 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T5 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T6 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T7 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T8 | 546-550 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T9 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T10 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T11 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T12 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T13 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T14 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T15 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T16 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T17 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T18 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T19 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T20 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T21 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T22 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T23 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T24 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T25 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T26 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T27 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T28 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T29 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T30 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 |
| T31 | 929-932 | GeneOrGeneProduct | denotes | RB1 |
| T32 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET |
| T33 | 1001-1005 | GeneOrGeneProduct | denotes | TP53 |
| T34 | 1031-1047 | DiseaseOrPhenotypicFeature | denotes | durable response |
| T35 | 1085-1088 | DiseaseOrPhenotypicFeature | denotes | NET |
| T36 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF |
| T37 | 1107-1112 | SequenceVariant | denotes | V600E |
| T38 | 1129-1140 | DiseaseOrPhenotypicFeature | denotes | progression |
| T39 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T40 | 1177-1181 | GeneOrGeneProduct | denotes | BRAF |
| T41 | 1182-1187 | SequenceVariant | denotes | V600E |
| T42 | 1192-1195 | DiseaseOrPhenotypicFeature | denotes | NET |
| T43 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T44 | 1240-1244 | GeneOrGeneProduct | denotes | BRAF |
| T45 | 1245-1250 | SequenceVariant | denotes | G593S |
| T46 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T47 | 1553-1557 | GeneOrGeneProduct | denotes | BRAF |
| T48 | 1558-1563 | SequenceVariant | denotes | V600E |
| T49 | 1596-1606 | DiseaseOrPhenotypicFeature | denotes | resistance |
| T50 | 1610-1619 | ChemicalEntity | denotes | pazopanib |
| T51 | 1681-1689 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
biored-valid-gpt-r-g
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-32 | SequenceVariant | denotes | BRAF V600E |
| T2 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T3 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T5 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T6 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T7 | 546-550 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T8 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T9 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T10 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T11 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T12 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T13 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T14 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T15 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T16 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T17 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T18 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T19 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T20 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T21 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T22 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T23 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T24 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T25 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T26 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T27 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T28 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T29 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T30 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 |
| T31 | 929-932 | GeneOrGeneProduct | denotes | RB1 |
| T32 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET |
| T33 | 1001-1005 | GeneOrGeneProduct | denotes | TP53 |
| T34 | 1085-1088 | DiseaseOrPhenotypicFeature | denotes | NET |
| T35 | 1102-1112 | SequenceVariant | denotes | BRAF V600E |
| T36 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T37 | 1177-1187 | SequenceVariant | denotes | BRAF V600E |
| T38 | 1192-1195 | DiseaseOrPhenotypicFeature | denotes | NET |
| T39 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T40 | 1240-1250 | SequenceVariant | denotes | BRAF G593S |
| T41 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T42 | 1487-1492 | DiseaseOrPhenotypicFeature | denotes | tumor |
| T43 | 1553-1563 | SequenceVariant | denotes | BRAF V600E |
| T44 | 1610-1619 | ChemicalEntity | denotes | pazopanib |
| T45 | 1670-1680 | DiseaseOrPhenotypicFeature | denotes | metastatic |
| T46 | 1681-1689 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
biored-valid-gpt-nr-g
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-32 | SequenceVariant | denotes | BRAF V600E |
| T2 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T3 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T5 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T6 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T7 | 546-550 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T8 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T9 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T10 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T11 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T12 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T13 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T14 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T15 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T16 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T17 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T18 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T19 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T20 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T21 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T22 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T23 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T24 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T25 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T26 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T27 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T28 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T29 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T30 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 |
| T31 | 929-932 | GeneOrGeneProduct | denotes | RB1 |
| T32 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET |
| T33 | 1001-1005 | GeneOrGeneProduct | denotes | TP53 |
| T34 | 1085-1088 | DiseaseOrPhenotypicFeature | denotes | NET |
| T35 | 1102-1112 | SequenceVariant | denotes | BRAF V600E |
| T36 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T37 | 1177-1187 | SequenceVariant | denotes | BRAF V600E |
| T38 | 1192-1195 | DiseaseOrPhenotypicFeature | denotes | NET |
| T39 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T40 | 1240-1250 | SequenceVariant | denotes | BRAF G593S |
| T41 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T42 | 1553-1563 | SequenceVariant | denotes | BRAF V600E |
| T43 | 1610-1619 | ChemicalEntity | denotes | pazopanib |
| T44 | 1670-1689 | DiseaseOrPhenotypicFeature | denotes | metastatic GEP-NETs |
biored-valid-gpt-r-ng
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 27-32 | SequenceVariant | denotes | V600E |
| T3 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T5 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T6 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T7 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T8 | 530-550 | DiseaseOrPhenotypicFeature | denotes | small intestine NETs |
| T9 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T10 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T11 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T12 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T13 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T14 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T15 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T16 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T17 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T18 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T19 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T20 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T21 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T22 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T23 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T24 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T25 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T26 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T27 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T28 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T29 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T30 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T31 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 |
| T32 | 929-932 | GeneOrGeneProduct | denotes | RB1 |
| T33 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET |
| T34 | 1001-1005 | GeneOrGeneProduct | denotes | TP53 |
| T35 | 1073-1084 | DiseaseOrPhenotypicFeature | denotes | grade (G) 1 |
| T36 | 1085-1088 | DiseaseOrPhenotypicFeature | denotes | NET |
| T37 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF |
| T38 | 1107-1112 | SequenceVariant | denotes | V600E |
| T39 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T40 | 1177-1181 | GeneOrGeneProduct | denotes | BRAF |
| T41 | 1182-1187 | SequenceVariant | denotes | V600E |
| T42 | 1189-1191 | DiseaseOrPhenotypicFeature | denotes | G1 |
| T43 | 1192-1195 | DiseaseOrPhenotypicFeature | denotes | NET |
| T44 | 1216-1218 | DiseaseOrPhenotypicFeature | denotes | G3 |
| T45 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T46 | 1240-1244 | GeneOrGeneProduct | denotes | BRAF |
| T47 | 1245-1250 | SequenceVariant | denotes | G593S |
| T48 | 1252-1254 | DiseaseOrPhenotypicFeature | denotes | G2 |
| T49 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T50 | 1553-1557 | GeneOrGeneProduct | denotes | BRAF |
| T51 | 1558-1563 | SequenceVariant | denotes | V600E |
| T52 | 1610-1619 | ChemicalEntity | denotes | pazopanib |
| T53 | 1670-1680 | DiseaseOrPhenotypicFeature | denotes | metastatic |
| T54 | 1681-1689 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
biored-valid-gemini-nr-g
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 27-32 | SequenceVariant | denotes | V600E |
| T3 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T5 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T6 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T7 | 530-550 | DiseaseOrPhenotypicFeature | denotes | small intestine NETs |
| T8 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T9 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T10 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T11 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T12 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T13 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T14 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T15 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T16 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T17 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T18 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T19 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T20 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T21 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T22 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T23 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T24 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T25 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T26 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T27 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T28 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T29 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T30 | 983-986 | DiseaseOrPhenotypicFeature | denotes | NET |
| T31 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF |
| T32 | 1107-1112 | SequenceVariant | denotes | V600E |
| T33 | 1129-1140 | DiseaseOrPhenotypicFeature | denotes | progression |
| T34 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T35 | 1182-1187 | SequenceVariant | denotes | V600E |
| T36 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T37 | 1240-1244 | GeneOrGeneProduct | denotes | BRAF |
| T38 | 1245-1250 | SequenceVariant | denotes | G593S |
| T39 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
biored-valid-gpt-r-m
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 27-32 | SequenceVariant | denotes | V600E |
| T3 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T5 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T6 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T7 | 348-356 | OrganismTaxon | denotes | patients |
| T8 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T9 | 546-550 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T10 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T11 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T12 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T13 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T14 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T15 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T16 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T17 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T18 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T19 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T20 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T21 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T22 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T23 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T24 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T25 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T26 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T27 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T28 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T29 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T30 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T31 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T32 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 |
| T33 | 929-932 | GeneOrGeneProduct | denotes | RB1 |
| T34 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET |
| T35 | 987-995 | OrganismTaxon | denotes | patients |
| T36 | 1001-1005 | GeneOrGeneProduct | denotes | TP53 |
| T37 | 1085-1088 | DiseaseOrPhenotypicFeature | denotes | NET |
| T38 | 1089-1096 | OrganismTaxon | denotes | patient |
| T39 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF |
| T40 | 1107-1112 | SequenceVariant | denotes | V600E |
| T41 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T42 | 1177-1181 | GeneOrGeneProduct | denotes | BRAF |
| T43 | 1182-1187 | SequenceVariant | denotes | V600E |
| T44 | 1192-1195 | DiseaseOrPhenotypicFeature | denotes | NET |
| T45 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T46 | 1240-1244 | GeneOrGeneProduct | denotes | BRAF |
| T47 | 1245-1250 | SequenceVariant | denotes | G593S |
| T48 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T49 | 1553-1557 | GeneOrGeneProduct | denotes | BRAF |
| T50 | 1558-1563 | SequenceVariant | denotes | V600E |
| T51 | 1610-1619 | ChemicalEntity | denotes | pazopanib |
| T52 | 1670-1680 | DiseaseOrPhenotypicFeature | denotes | metastatic |
| T53 | 1681-1689 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T54 | 1690-1698 | OrganismTaxon | denotes | patients |
biored-valid-gemini-r-m
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-26 | GeneOrGeneProduct | denotes | BRAF |
| T2 | 27-32 | SequenceVariant | denotes | V600E |
| T3 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T5 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T6 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T7 | 348-356 | OrganismTaxon | denotes | patients |
| T8 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T9 | 546-550 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T10 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T11 | 702-708 | DiseaseOrPhenotypicFeature | denotes | cancer |
| T12 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T13 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T14 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T15 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T16 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T17 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T18 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T19 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T20 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T21 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T22 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T23 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T24 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T25 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T26 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T27 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T28 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T29 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T30 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T31 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T32 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T33 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 |
| T34 | 929-932 | GeneOrGeneProduct | denotes | RB1 |
| T35 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET |
| T36 | 987-995 | OrganismTaxon | denotes | patients |
| T37 | 1001-1005 | GeneOrGeneProduct | denotes | TP53 |
| T38 | 1085-1088 | DiseaseOrPhenotypicFeature | denotes | NET |
| T39 | 1102-1106 | GeneOrGeneProduct | denotes | BRAF |
| T40 | 1107-1112 | SequenceVariant | denotes | V600E |
| T41 | 1129-1140 | DiseaseOrPhenotypicFeature | denotes | progression |
| T42 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T43 | 1192-1195 | DiseaseOrPhenotypicFeature | denotes | NET |
| T44 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T45 | 1245-1250 | SequenceVariant | denotes | G593S |
| T46 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T47 | 1524-1536 | ChemicalEntity | denotes | chemotherapy |
| T48 | 1553-1557 | GeneOrGeneProduct | denotes | BRAF |
| T49 | 1558-1563 | SequenceVariant | denotes | V600E |
| T50 | 1610-1619 | ChemicalEntity | denotes | pazopanib |
| T51 | 1670-1680 | DiseaseOrPhenotypicFeature | denotes | metastatic |
| T52 | 1681-1689 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T53 | 1690-1698 | OrganismTaxon | denotes | patients |
biored-valid-deepseek-r-m
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 22-32 | SequenceVariant | denotes | BRAF V600E |
| T2 | 45-89 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T3 | 111-155 | DiseaseOrPhenotypicFeature | denotes | gastroenteropancreatic neuroendocrine tumors |
| T4 | 157-165 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T5 | 334-342 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T6 | 433-442 | ChemicalEntity | denotes | pazopanib |
| T7 | 546-550 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T8 | 652-660 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T9 | 702-708 | DiseaseOrPhenotypicFeature | denotes | cancer |
| T10 | 733-737 | GeneOrGeneProduct | denotes | TP53 |
| T11 | 739-744 | GeneOrGeneProduct | denotes | CNBD1 |
| T12 | 746-749 | GeneOrGeneProduct | denotes | RB1 |
| T13 | 751-754 | GeneOrGeneProduct | denotes | APC |
| T14 | 756-760 | GeneOrGeneProduct | denotes | BCOR |
| T15 | 762-766 | GeneOrGeneProduct | denotes | BRAF |
| T16 | 768-774 | GeneOrGeneProduct | denotes | CTNNB1 |
| T17 | 776-780 | GeneOrGeneProduct | denotes | EGFR |
| T18 | 782-787 | GeneOrGeneProduct | denotes | EP300 |
| T19 | 789-794 | GeneOrGeneProduct | denotes | ERBB3 |
| T20 | 796-801 | GeneOrGeneProduct | denotes | KDM6A |
| T21 | 803-807 | GeneOrGeneProduct | denotes | KRAS |
| T22 | 809-812 | GeneOrGeneProduct | denotes | MGA |
| T23 | 814-818 | GeneOrGeneProduct | denotes | MLL3 |
| T24 | 820-824 | GeneOrGeneProduct | denotes | PTEN |
| T25 | 826-831 | GeneOrGeneProduct | denotes | RASA1 |
| T26 | 833-840 | GeneOrGeneProduct | denotes | SMARCB1 |
| T27 | 842-846 | GeneOrGeneProduct | denotes | SPEN |
| T28 | 848-855 | GeneOrGeneProduct | denotes | TBC1D12 |
| T29 | 861-864 | GeneOrGeneProduct | denotes | VHL |
| T30 | 866-870 | GeneOrGeneProduct | denotes | TP53 |
| T31 | 919-924 | GeneOrGeneProduct | denotes | CNBD1 |
| T32 | 929-932 | GeneOrGeneProduct | denotes | RB1 |
| T33 | 979-986 | DiseaseOrPhenotypicFeature | denotes | GEP-NET |
| T34 | 1085-1088 | DiseaseOrPhenotypicFeature | denotes | NET |
| T35 | 1102-1112 | SequenceVariant | denotes | BRAF V600E |
| T36 | 1147-1156 | ChemicalEntity | denotes | pazopanib |
| T37 | 1177-1187 | SequenceVariant | denotes | BRAF V600E |
| T38 | 1219-1223 | DiseaseOrPhenotypicFeature | denotes | NETs |
| T39 | 1240-1250 | SequenceVariant | denotes | BRAF G593S |
| T40 | 1331-1339 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |
| T41 | 1487-1492 | DiseaseOrPhenotypicFeature | denotes | tumor |
| T42 | 1553-1563 | SequenceVariant | denotes | BRAF V600E |
| T43 | 1610-1619 | ChemicalEntity | denotes | pazopanib |
| T44 | 1681-1689 | DiseaseOrPhenotypicFeature | denotes | GEP-NETs |