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PubMed:26582605 JSONTXT

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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-135 Sentence denotes Structure and gene cluster of the O-antigen of Escherichia coli O165 containing 5-N-acetyl-7-N-[(R)-3-hydroxybutanoyl]pseudaminic acid.
TextSentencer_T2 136-350 Sentence denotes Upon mild acid degradation of the lipopolysaccharide of Escherichia coli O165, the O-polysaccharide chain was cleaved at the glycosidic linkage of 5-N-acetyl-7-N-[(R)-3-hydroxybutanoyl]pseudaminic acid (Pse5Hb7Ac).
TextSentencer_T3 351-649 Sentence denotes Analysis of the resulting linear tetrasaccharide and alkali-treated lipopolysaccharide by (1)H/(13)C 1D and 2D nuclear magnetic resonance spectroscopy enabled elucidation of the following structure of the O-polysaccharide: →8)-α-Psep5Hb7Ac-(2 → 6)-β-d-Galp-(1 → 4)-β-d-Glсp-(1 → 3)-α-d-GlсpNAc-(1→.
TextSentencer_T4 650-772 Sentence denotes The β-d-Galp-(1 → 4)-β-d-Glсp-(1 → 3)-d-GlсpNAc structural element is also present in the O-polysaccharide of E. coli O82.
TextSentencer_T5 773-906 Sentence denotes The content of the O-antigen gene cluster of E. coli O165 was found to be consistent with the O-polysaccharide structure established.
TextSentencer_T6 907-1118 Sentence denotes Functions of proteins encoded in the gene cluster, including enzymes involved in the Pse5Hb7Ac biosynthesis and glycosyltransferases, were putatively assigned by comparison with sequences in available databases.
T1 0-135 Sentence denotes Structure and gene cluster of the O-antigen of Escherichia coli O165 containing 5-N-acetyl-7-N-[(R)-3-hydroxybutanoyl]pseudaminic acid.
T2 136-350 Sentence denotes Upon mild acid degradation of the lipopolysaccharide of Escherichia coli O165, the O-polysaccharide chain was cleaved at the glycosidic linkage of 5-N-acetyl-7-N-[(R)-3-hydroxybutanoyl]pseudaminic acid (Pse5Hb7Ac).
T3 351-649 Sentence denotes Analysis of the resulting linear tetrasaccharide and alkali-treated lipopolysaccharide by (1)H/(13)C 1D and 2D nuclear magnetic resonance spectroscopy enabled elucidation of the following structure of the O-polysaccharide: →8)-α-Psep5Hb7Ac-(2 → 6)-β-d-Galp-(1 → 4)-β-d-Glсp-(1 → 3)-α-d-GlсpNAc-(1→.
T4 650-772 Sentence denotes The β-d-Galp-(1 → 4)-β-d-Glсp-(1 → 3)-d-GlсpNAc structural element is also present in the O-polysaccharide of E. coli O82.
T5 773-906 Sentence denotes The content of the O-antigen gene cluster of E. coli O165 was found to be consistent with the O-polysaccharide structure established.
T6 907-1118 Sentence denotes Functions of proteins encoded in the gene cluster, including enzymes involved in the Pse5Hb7Ac biosynthesis and glycosyltransferases, were putatively assigned by comparison with sequences in available databases.
T1 0-135 Sentence denotes Structure and gene cluster of the O-antigen of Escherichia coli O165 containing 5-N-acetyl-7-N-[(R)-3-hydroxybutanoyl]pseudaminic acid.
T2 136-350 Sentence denotes Upon mild acid degradation of the lipopolysaccharide of Escherichia coli O165, the O-polysaccharide chain was cleaved at the glycosidic linkage of 5-N-acetyl-7-N-[(R)-3-hydroxybutanoyl]pseudaminic acid (Pse5Hb7Ac).
T3 351-649 Sentence denotes Analysis of the resulting linear tetrasaccharide and alkali-treated lipopolysaccharide by (1)H/(13)C 1D and 2D nuclear magnetic resonance spectroscopy enabled elucidation of the following structure of the O-polysaccharide: →8)-α-Psep5Hb7Ac-(2 → 6)-β-d-Galp-(1 → 4)-β-d-Glсp-(1 → 3)-α-d-GlсpNAc-(1→.
T4 650-772 Sentence denotes The β-d-Galp-(1 → 4)-β-d-Glсp-(1 → 3)-d-GlсpNAc structural element is also present in the O-polysaccharide of E. coli O82.
T5 773-906 Sentence denotes The content of the O-antigen gene cluster of E. coli O165 was found to be consistent with the O-polysaccharide structure established.
T6 907-1118 Sentence denotes Functions of proteins encoded in the gene cluster, including enzymes involved in the Pse5Hb7Ac biosynthesis and glycosyltransferases, were putatively assigned by comparison with sequences in available databases.

GlycoBiology-PACDB

Id Subject Object Predicate Lexical cue
_T1 47-63 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC002,LEC056,LEC062,LEC069,LEC081,LEC111,LEC133,LEC171,LEC177,LEC187,LEC211,LEC242,LEC252,LEC258,LEC259,LEC260,LEC262,LEC369,LEC377,LEC422,LEC442,LEC448,LEC450,LEC451,LEC454,LEC472,LEC492,LEC620 denotes Escherichia coli
_T2 47-63 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC636 denotes Escherichia coli
_T3 47-63 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC157,LEC407 denotes Escherichia coli
_T4 47-63 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC054,LEC058,LEC073,LEC082,LEC091,LEC103,LEC109,LEC110,LEC123,LEC158,LEC179,LEC198,LEC205,LEC222,LEC223,LEC224,LEC225,LEC232,LEC298,LEC357,LEC378,LEC383,LEC388,LEC389,LEC397,LEC401,LEC410,LEC452 denotes Escherichia coli
_T5 47-63 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC754 denotes Escherichia coli
_T6 47-63 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC244,LEC256,LEC354 denotes Escherichia coli
_T7 47-63 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC243,LEC640 denotes Escherichia coli
_T8 47-63 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC295,LEC417 denotes Escherichia coli
_T9 47-63 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC487 denotes Escherichia coli
_T10 47-68 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC267,LEC475 denotes Escherichia coli O165
_T11 192-208 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC754 denotes Escherichia coli
_T12 192-208 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC487 denotes Escherichia coli
_T13 192-208 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC295,LEC417 denotes Escherichia coli
_T14 192-208 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC636 denotes Escherichia coli
_T15 192-208 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC243,LEC640 denotes Escherichia coli
_T16 192-208 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC002,LEC056,LEC062,LEC069,LEC081,LEC111,LEC133,LEC171,LEC177,LEC187,LEC211,LEC242,LEC252,LEC258,LEC259,LEC260,LEC262,LEC369,LEC377,LEC422,LEC442,LEC448,LEC450,LEC451,LEC454,LEC472,LEC492,LEC620 denotes Escherichia coli
_T17 192-208 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC157,LEC407 denotes Escherichia coli
_T18 192-208 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC054,LEC058,LEC073,LEC082,LEC091,LEC103,LEC109,LEC110,LEC123,LEC158,LEC179,LEC198,LEC205,LEC222,LEC223,LEC224,LEC225,LEC232,LEC298,LEC357,LEC378,LEC383,LEC388,LEC389,LEC397,LEC401,LEC410,LEC452 denotes Escherichia coli
_T19 192-208 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC244,LEC256,LEC354 denotes Escherichia coli
_T20 192-213 http://acgg.asia/db/diseases/pacdb/lec?ids=LEC267,LEC475 denotes Escherichia coli O165

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 14-18 FMAID:198663 denotes gene
_T2 14-26 FMAID:198017 denotes gene cluster
_T3 14-26 FMAID:84082 denotes gene cluster
_T4 170-188 FMAID:82746 denotes lipopolysaccharide
_T5 170-188 FMAID:196735 denotes lipopolysaccharide
_T6 170-188 FMAID:196779 denotes lipopolysaccharide
_T7 170-188 FMAID:82785 denotes lipopolysaccharide
_T8 221-235 FMAID:196735 denotes polysaccharide
_T9 221-235 FMAID:82785 denotes polysaccharide
_T10 221-235 FMAID:196779 denotes polysaccharide
_T11 221-235 FMAID:82746 denotes polysaccharide
_T12 419-437 FMAID:82785 denotes lipopolysaccharide
_T13 419-437 FMAID:196779 denotes lipopolysaccharide
_T14 419-437 FMAID:196735 denotes lipopolysaccharide
_T15 419-437 FMAID:82746 denotes lipopolysaccharide
_T16 558-572 FMAID:196735 denotes polysaccharide
_T17 558-572 FMAID:196779 denotes polysaccharide
_T18 558-572 FMAID:82785 denotes polysaccharide
_T19 558-572 FMAID:82746 denotes polysaccharide
_T20 742-756 FMAID:196735 denotes polysaccharide
_T21 742-756 FMAID:82746 denotes polysaccharide
_T22 742-756 FMAID:196779 denotes polysaccharide
_T23 742-756 FMAID:82785 denotes polysaccharide
_T24 802-806 FMAID:198663 denotes gene
_T25 802-814 FMAID:84082 denotes gene cluster
_T26 802-814 FMAID:198017 denotes gene cluster
_T27 869-883 FMAID:196735 denotes polysaccharide
_T28 869-883 FMAID:82785 denotes polysaccharide
_T29 869-883 FMAID:196779 denotes polysaccharide
_T30 869-883 FMAID:82746 denotes polysaccharide
_T31 920-928 FMAID:67257 denotes proteins
_T32 920-928 FMAID:165447 denotes proteins
_T33 944-948 FMAID:198663 denotes gene
_T34 944-956 FMAID:84082 denotes gene cluster
_T35 944-956 FMAID:198017 denotes gene cluster

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 47-58 http://purl.bioontology.org/ontology/NCBITAXON/561 denotes Escherichia
T2 118-129 http://purl.bioontology.org/ontology/NCBITAXON/475179 denotes pseudaminic
T3 192-203 http://purl.bioontology.org/ontology/NCBITAXON/561 denotes Escherichia
T4 321-332 http://purl.bioontology.org/ontology/NCBITAXON/475179 denotes pseudaminic

GO-BP

Id Subject Object Predicate Lexical cue
T1 151-162 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T2 151-188 http://purl.obolibrary.org/obo/GO_0009104 denotes degradation of the lipopolysaccharide
T3 1002-1014 http://purl.obolibrary.org/obo/GO_0009058 denotes biosynthesis

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 47-63 OrganismTaxon denotes Escherichia coli 562
T2 192-208 OrganismTaxon denotes Escherichia coli 562
T3 760-767 OrganismTaxon denotes E. coli 562
T4 818-825 OrganismTaxon denotes E. coli 562