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pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 362-374 xzyao:1553 denotes Oryza sativa
M_1 861-884 funRiceGene:348, xzyao:30433 denotes reactive oxygen species
M_2 1258-1277 funRiceGene:486, xzyao:13033 denotes signal transduction
M_3 2047-2066 funRiceGene:486, xzyao:13033 denotes signal transduction
M_4 191-212 xzyao:21446 denotes physiological process
M_5 861-876 xzyao:38879 denotes reactive oxygen
M_6 144-150 PO:0009073 denotes stigma
M_7 920-926 PO:0009073 denotes stigma
M_8 1801-1807 PO:0009073 denotes stigma
M_9 137-143 PO:0025281, funRiceGene:432 denotes Pollen
M_10 1708-1714 PO:0025281, funRiceGene:432 denotes pollen
M_11 989-1006 funRiceGene:428, xzyao:43549 denotes redox homeostasis
M_12 1865-1882 funRiceGene:428, xzyao:43549 denotes redox homeostasis
M_13 995-1006 funRiceGene:130 denotes homeostasis
M_14 1871-1882 funRiceGene:130 denotes homeostasis
M_15 15-19 hunflair:NA:Species denotes rice
M_16 356-360 hunflair:NA:Species denotes rice
M_17 511-515 hunflair:NA:Species denotes rice
M_18 1381-1385 hunflair:NA:Species denotes rice
M_19 1518-1522 hunflair:NA:Species denotes rice
M_20 2175-2179 hunflair:NA:Species denotes rice
M_21 870-876 hunflair:NA:Chemical denotes oxygen
M_22 362-374 hunflair:NA:Species denotes Oryza sativa
M_23 870-876 pubtator:MESH:D010100:Chemical denotes oxygen
M_24 362-374 pubtator:4530:Species denotes Oryza sativa
M_25 15-19 pubtator:4530:Species denotes rice
M_26 356-360 pubtator:4530:Species denotes rice
M_27 511-515 pubtator:4530:Species denotes rice
M_28 1381-1385 pubtator:4530:Species denotes rice
M_29 1518-1522 pubtator:4530:Species denotes rice
M_30 2175-2179 pubtator:4530:Species denotes rice

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 1258-1277 funRiceGene:486, xzyao:14470 denotes signal transduction
M_1 2047-2066 funRiceGene:486, xzyao:14470 denotes signal transduction
M_2 989-1006 funRiceGene:428, xzyao:14954 denotes redox homeostasis
M_3 1865-1882 funRiceGene:428, xzyao:14954 denotes redox homeostasis
M_4 1708-1714 PO:0025281, funRiceGene:432 denotes pollen
M_5 1801-1807 PO:0009073 denotes stigma
M_6 995-1006 funRiceGene:130 denotes homeostasis
M_7 1871-1882 funRiceGene:130 denotes homeostasis
M_8 861-884 funRiceGene:348, xzyao:7774 denotes reactive oxygen species
M_9 870-876 hunflair:NA:Chemical denotes oxygen
M_10 15-19 hunflair:NA:Species denotes rice
M_11 356-360 hunflair:NA:Species denotes rice
M_12 511-515 hunflair:NA:Species denotes rice
M_13 1381-1385 hunflair:NA:Species denotes rice
M_14 1518-1522 hunflair:NA:Species denotes rice
M_15 2175-2179 hunflair:NA:Species denotes rice
M_16 362-374 hunflair:NA:Species denotes Oryza sativa
M_17 362-374 pubtator:4530:Species denotes Oryza sativa
M_18 870-876 pubtator:MESH:D010100:Chemical denotes oxygen
M_19 15-19 pubtator:4530:Species denotes rice
M_20 356-360 pubtator:4530:Species denotes rice
M_21 511-515 pubtator:4530:Species denotes rice
M_22 1381-1385 pubtator:4530:Species denotes rice
M_23 1518-1522 pubtator:4530:Species denotes rice
M_24 2175-2179 pubtator:4530:Species denotes rice

sentences

Id Subject Object Predicate Lexical cue
T1 0-124 Sentence denotes Exploration of rice pistil responses during early post-pollination through a combined proteomic and transcriptomic analysis.
T2 125-136 Sentence denotes UNLABELLED:
T3 137-273 Sentence denotes Pollen-stigma interaction is a multi-step and complex physiological process which contains different signaling and biochemical pathways.
T4 274-376 Sentence denotes However, little is known about the molecular mechanism underlying this process in rice (Oryza sativa).
T5 377-542 Sentence denotes In this study, the changes of gene expression were investigated through a combination study of transcriptome and proteome profiles in rice pistil during pollination.
T6 543-693 Sentence denotes Totally, 1117 differentially expressed genes were identified, among which 962 and 167 were detected at transcriptional and protein level respectively.
T7 694-856 Sentence denotes Functional categorization analysis showed that the genes involved in central metabolism were up-regulated, which can lead to the enhancement of these metabolisms.
T8 857-927 Sentence denotes The reactive oxygen species (ROS) were over-accumulated in the stigma.
T9 928-1048 Sentence denotes In response to this, the proteins or transcripts involved in redox homeostasis regulation were differentially expressed.
T10 1049-1309 Sentence denotes Furthermore, significant changes of protein ubiquitination and its related genes or proteins, especially some E3 ligases encoding genes, indicate that protein ubiquitination might play important roles in cell signal transduction during the pollination process.
T11 1310-1523 Sentence denotes Our study sheds some lights on gene and protein expression profiles of rice pistil pollination process, and gives us a comprehensive understanding of the basic molecular mechanisms controlling pollination in rice.
T12 1524-1548 Sentence denotes BIOLOGICAL SIGNIFICANCE:
T13 1549-1738 Sentence denotes Using RNA-seq, 2-DE and iTRAQ assays, we have generated the large-scale transcriptomic and proteomic data containing abundant information on genes involved in pollen and pistil interaction.
T14 1739-1913 Sentence denotes Our results showed that ROS were significantly accumulated in stigma after pollination, and the abundance of genes involve in redox homeostasis system were changed variously.
T15 1914-2098 Sentence denotes We also show that, changes of some E3 ligases encoding genes might indicate that protein ubiquitination play important roles in cell signal transduction during the pollination process.
T16 2099-2180 Sentence denotes Data in this study might be helpful to deeply understand the pollination in rice.
T1 0-124 Sentence denotes Exploration of rice pistil responses during early post-pollination through a combined proteomic and transcriptomic analysis.
T2 125-136 Sentence denotes UNLABELLED:
T3 137-273 Sentence denotes Pollen-stigma interaction is a multi-step and complex physiological process which contains different signaling and biochemical pathways.
T4 274-376 Sentence denotes However, little is known about the molecular mechanism underlying this process in rice (Oryza sativa).
T5 377-542 Sentence denotes In this study, the changes of gene expression were investigated through a combination study of transcriptome and proteome profiles in rice pistil during pollination.
T6 543-693 Sentence denotes Totally, 1117 differentially expressed genes were identified, among which 962 and 167 were detected at transcriptional and protein level respectively.
T7 694-856 Sentence denotes Functional categorization analysis showed that the genes involved in central metabolism were up-regulated, which can lead to the enhancement of these metabolisms.
T8 857-927 Sentence denotes The reactive oxygen species (ROS) were over-accumulated in the stigma.
T9 928-1048 Sentence denotes In response to this, the proteins or transcripts involved in redox homeostasis regulation were differentially expressed.
T10 1049-1309 Sentence denotes Furthermore, significant changes of protein ubiquitination and its related genes or proteins, especially some E3 ligases encoding genes, indicate that protein ubiquitination might play important roles in cell signal transduction during the pollination process.
T11 1310-1523 Sentence denotes Our study sheds some lights on gene and protein expression profiles of rice pistil pollination process, and gives us a comprehensive understanding of the basic molecular mechanisms controlling pollination in rice.
T12 1524-1548 Sentence denotes BIOLOGICAL SIGNIFICANCE:
T13 1549-1738 Sentence denotes Using RNA-seq, 2-DE and iTRAQ assays, we have generated the large-scale transcriptomic and proteomic data containing abundant information on genes involved in pollen and pistil interaction.
T14 1739-1913 Sentence denotes Our results showed that ROS were significantly accumulated in stigma after pollination, and the abundance of genes involve in redox homeostasis system were changed variously.
T15 1914-2098 Sentence denotes We also show that, changes of some E3 ligases encoding genes might indicate that protein ubiquitination play important roles in cell signal transduction during the pollination process.
T16 2099-2180 Sentence denotes Data in this study might be helpful to deeply understand the pollination in rice.

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 1159-1161 http://identifiers.org/oryzabase.gene/524 denotes E3
T2 1949-1951 http://identifiers.org/oryzabase.gene/524 denotes E3

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 870-876 hunflair:NA:Chemical denotes oxygen
M_1 362-374 hunflair:NA:Species denotes Oryza sativa
M_2 15-19 hunflair:NA:Species denotes rice
M_3 356-360 hunflair:NA:Species denotes rice
M_4 511-515 hunflair:NA:Species denotes rice
M_5 1381-1385 hunflair:NA:Species denotes rice
M_6 1518-1522 hunflair:NA:Species denotes rice
M_7 2175-2179 hunflair:NA:Species denotes rice

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 1159-1161 http://identifiers.org/oryzabase.gene/524 denotes E3
T2 1949-1951 http://identifiers.org/oryzabase.gene/524 denotes E3
T13085 1093-1107 http://identifiers.org/ricegap/LOC_Os09g39500 denotes ubiquitination
T2647 1093-1107 http://identifiers.org/ricegap/LOC_Os06g44080 denotes ubiquitination
T3 1208-1222 http://identifiers.org/ricegap/LOC_Os09g39500 denotes ubiquitination
T4 1208-1222 http://identifiers.org/ricegap/LOC_Os06g44080 denotes ubiquitination
T5 2003-2017 http://identifiers.org/ricegap/LOC_Os09g39500 denotes ubiquitination
T6 2003-2017 http://identifiers.org/ricegap/LOC_Os06g44080 denotes ubiquitination
T93070 1093-1107 http://identifiers.org/rapdb.locus/Os09g0568400 denotes ubiquitination
T92794 1093-1107 http://identifiers.org/rapdb.locus/Os06g0650100 denotes ubiquitination
T48404 1208-1222 http://identifiers.org/rapdb.locus/Os09g0568400 denotes ubiquitination
T42916 1208-1222 http://identifiers.org/rapdb.locus/Os06g0650100 denotes ubiquitination
T10745 2003-2017 http://identifiers.org/rapdb.locus/Os09g0568400 denotes ubiquitination
T5126 2003-2017 http://identifiers.org/rapdb.locus/Os06g0650100 denotes ubiquitination
M_0 870-876 hunflair:NA:Chemical denotes oxygen
M_1 362-374 hunflair:NA:Species denotes Oryza sativa
M_2 15-19 hunflair:NA:Species denotes rice
M_3 356-360 hunflair:NA:Species denotes rice
M_4 511-515 hunflair:NA:Species denotes rice
M_5 1381-1385 hunflair:NA:Species denotes rice
M_6 1518-1522 hunflair:NA:Species denotes rice
M_7 2175-2179 hunflair:NA:Species denotes rice

OryzaGP

Id Subject Object Predicate Lexical cue
T1 1949-1951 gene denotes E3

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 15-19 OrganismTaxon denotes rice 4530
T2 356-360 OrganismTaxon denotes rice 4530
T3 362-374 OrganismTaxon denotes Oryza sativa 4530
T4 511-515 OrganismTaxon denotes rice 4530
T5 1381-1385 OrganismTaxon denotes rice 4530
T6 1518-1522 OrganismTaxon denotes rice 4530
T7 2175-2179 OrganismTaxon denotes rice 4530

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1615-1620 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542