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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-134 Sentence denotes Effects of Sample Size and Dimensionality on the Performance of Four Algorithms for Inference of Association Networks in Metabonomics.
TextSentencer_T2 135-337 Sentence denotes We investigated the effect of sample size and dimensionality on the performance of four algorithms (ARACNE, CLR, CORR, and PCLRC) when they are used for the inference of metabolite association networks.
TextSentencer_T3 338-501 Sentence denotes We report that as many as 100-400 samples may be necessary to obtain stable network estimations, depending on the algorithm and the number of measured metabolites.
TextSentencer_T4 502-752 Sentence denotes The CLR and PCLRC methods produce similar results, whereas network inference based on correlations provides sparse networks; we found ARACNE to be unsuitable for this application, being unable to recover the underlying metabolite association network.
TextSentencer_T5 753-839 Sentence denotes We recommend the PCLRC algorithm for the inference on metabolite association networks.
T1 0-134 Sentence denotes Effects of Sample Size and Dimensionality on the Performance of Four Algorithms for Inference of Association Networks in Metabonomics.
T2 135-337 Sentence denotes We investigated the effect of sample size and dimensionality on the performance of four algorithms (ARACNE, CLR, CORR, and PCLRC) when they are used for the inference of metabolite association networks.
T3 338-501 Sentence denotes We report that as many as 100-400 samples may be necessary to obtain stable network estimations, depending on the algorithm and the number of measured metabolites.
T4 502-752 Sentence denotes The CLR and PCLRC methods produce similar results, whereas network inference based on correlations provides sparse networks; we found ARACNE to be unsuitable for this application, being unable to recover the underlying metabolite association network.
T5 753-839 Sentence denotes We recommend the PCLRC algorithm for the inference on metabolite association networks.

pubmed-enju-pas

Id Subject Object Predicate Lexical cue
EnjuParser_T0 0-7 NNS denotes Effects
EnjuParser_T1 8-10 IN denotes of
EnjuParser_T2 11-17 NNP denotes Sample
EnjuParser_T3 18-22 NNP denotes Size
EnjuParser_T4 23-26 CC denotes and
EnjuParser_T5 27-41 NN denotes Dimensionality
EnjuParser_T6 42-44 IN denotes on
EnjuParser_T7 45-48 DT denotes the
EnjuParser_T8 49-60 NNP denotes Performance
EnjuParser_T9 61-63 IN denotes of
EnjuParser_T10 64-68 NNP denotes Four
EnjuParser_T11 69-79 NNPS denotes Algorithms
EnjuParser_T12 80-83 IN denotes for
EnjuParser_T13 84-93 NN denotes Inference
EnjuParser_T14 94-96 IN denotes of
EnjuParser_T15 97-108 NNP denotes Association
EnjuParser_T16 109-117 NNP denotes Networks
EnjuParser_T17 118-120 IN denotes in
EnjuParser_T18 121-133 NNP denotes Metabonomics
EnjuParser_T19 135-137 PRP denotes We
EnjuParser_T20 138-150 VBD denotes investigated
EnjuParser_T21 151-154 DT denotes the
EnjuParser_T22 155-161 NN denotes effect
EnjuParser_T23 162-164 IN denotes of
EnjuParser_T24 165-171 NN denotes sample
EnjuParser_T25 172-176 NN denotes size
EnjuParser_T26 177-180 CC denotes and
EnjuParser_T27 181-195 NN denotes dimensionality
EnjuParser_T28 196-198 IN denotes on
EnjuParser_T29 199-202 DT denotes the
EnjuParser_T30 203-214 NN denotes performance
EnjuParser_T31 215-217 IN denotes of
EnjuParser_T32 218-222 CD denotes four
EnjuParser_T33 223-233 NNS denotes algorithms
EnjuParser_T34 234-235 -LRB- denotes (
EnjuParser_T35 235-241 NN denotes ARACNE
EnjuParser_T36 241-242 -COMMA- denotes ,
EnjuParser_T37 243-246 NN denotes CLR
EnjuParser_T38 246-247 -COMMA- denotes ,
EnjuParser_T39 248-252 NN denotes CORR
EnjuParser_T40 252-253 -COMMA- denotes ,
EnjuParser_T41 254-257 CC denotes and
EnjuParser_T42 258-263 NN denotes PCLRC
EnjuParser_T43 263-264 -RRB- denotes )
EnjuParser_T44 265-269 WRB denotes when
EnjuParser_T45 270-274 PRP denotes they
EnjuParser_T46 275-278 VBP denotes are
EnjuParser_T47 279-283 VBN denotes used
EnjuParser_T48 284-287 IN denotes for
EnjuParser_T49 288-291 DT denotes the
EnjuParser_T50 292-301 NN denotes inference
EnjuParser_T51 302-304 IN denotes of
EnjuParser_T52 305-315 NN denotes metabolite
EnjuParser_T53 316-327 NN denotes association
EnjuParser_T54 328-336 NNS denotes networks
EnjuParser_T55 338-340 PRP denotes We
EnjuParser_T56 341-347 VBP denotes report
EnjuParser_T57 348-352 IN denotes that
EnjuParser_T58 353-355 RB denotes as
EnjuParser_T59 356-360 JJ denotes many
EnjuParser_T60 361-363 IN denotes as
EnjuParser_T61 364-371 JJ denotes 100-400
EnjuParser_T62 372-379 NNS denotes samples
EnjuParser_T63 380-383 MD denotes may
EnjuParser_T64 384-386 VB denotes be
EnjuParser_T65 387-396 JJ denotes necessary
EnjuParser_T66 397-399 TO denotes to
EnjuParser_T67 400-406 VB denotes obtain
EnjuParser_T68 407-413 JJ denotes stable
EnjuParser_T69 414-421 NN denotes network
EnjuParser_T70 422-433 NNS denotes estimations
EnjuParser_T71 433-434 -COMMA- denotes ,
EnjuParser_T72 435-444 VBG denotes depending
EnjuParser_T73 445-447 IN denotes on
EnjuParser_T74 448-451 DT denotes the
EnjuParser_T75 452-461 NN denotes algorithm
EnjuParser_T76 462-465 CC denotes and
EnjuParser_T77 466-469 DT denotes the
EnjuParser_T78 470-476 NN denotes number
EnjuParser_T79 477-479 IN denotes of
EnjuParser_T80 480-488 VBN denotes measured
EnjuParser_T81 489-500 NNS denotes metabolites
EnjuParser_T82 502-505 DT denotes The
EnjuParser_T83 506-509 NN denotes CLR
EnjuParser_T84 510-513 CC denotes and
EnjuParser_T85 514-519 NN denotes PCLRC
EnjuParser_T86 520-527 NNS denotes methods
EnjuParser_T87 528-535 VBP denotes produce
EnjuParser_T88 536-543 JJ denotes similar
EnjuParser_T89 544-551 NNS denotes results
EnjuParser_T90 551-552 -COMMA- denotes ,
EnjuParser_T91 553-560 IN denotes whereas
EnjuParser_T92 561-568 NN denotes network
EnjuParser_T93 569-578 NN denotes inference
EnjuParser_T94 579-584 VBN denotes based
EnjuParser_T95 585-587 IN denotes on
EnjuParser_T96 588-600 NNS denotes correlations
EnjuParser_T97 601-609 VBZ denotes provides
EnjuParser_T98 610-616 JJ denotes sparse
EnjuParser_T99 617-625 NNS denotes networks
EnjuParser_T100 625-626 -SEMICOLON- denotes ;
EnjuParser_T101 627-629 PRP denotes we
EnjuParser_T102 630-635 VBD denotes found
EnjuParser_T103 636-642 NN denotes ARACNE
EnjuParser_T104 643-645 TO denotes to
EnjuParser_T105 646-648 VB denotes be
EnjuParser_T106 649-659 JJ denotes unsuitable
EnjuParser_T107 660-663 IN denotes for
EnjuParser_T108 664-668 DT denotes this
EnjuParser_T109 669-680 NN denotes application
EnjuParser_T110 680-681 -COMMA- denotes ,
EnjuParser_T111 682-687 VBG denotes being
EnjuParser_T112 688-694 JJ denotes unable
EnjuParser_T113 695-697 TO denotes to
EnjuParser_T114 698-705 VB denotes recover
EnjuParser_T115 706-709 DT denotes the
EnjuParser_T116 710-720 VBG denotes underlying
EnjuParser_T117 721-731 NN denotes metabolite
EnjuParser_T118 732-743 NN denotes association
EnjuParser_T119 744-751 NN denotes network
EnjuParser_T120 753-755 PRP denotes We
EnjuParser_T121 756-765 VBP denotes recommend
EnjuParser_T122 766-769 DT denotes the
EnjuParser_T123 770-775 NN denotes PCLRC
EnjuParser_T124 776-785 NN denotes algorithm
EnjuParser_T125 786-789 IN denotes for
EnjuParser_T126 790-793 DT denotes the
EnjuParser_T127 794-803 NN denotes inference
EnjuParser_T128 804-806 IN denotes on
EnjuParser_T129 807-817 NN denotes metabolite
EnjuParser_T130 818-829 NN denotes association
EnjuParser_T131 830-838 NNS denotes networks
EnjuParser_R0 EnjuParser_T0 EnjuParser_T1 arg1Of Effects,of
EnjuParser_R1 EnjuParser_T4 EnjuParser_T1 arg2Of and,of
EnjuParser_R2 EnjuParser_T3 EnjuParser_T2 arg1Of Size,Sample
EnjuParser_R3 EnjuParser_T3 EnjuParser_T4 arg1Of Size,and
EnjuParser_R4 EnjuParser_T5 EnjuParser_T4 arg2Of Dimensionality,and
EnjuParser_R5 EnjuParser_T0 EnjuParser_T6 arg1Of Effects,on
EnjuParser_R6 EnjuParser_T8 EnjuParser_T6 arg2Of Performance,on
EnjuParser_R7 EnjuParser_T8 EnjuParser_T7 arg1Of Performance,the
EnjuParser_R8 EnjuParser_T8 EnjuParser_T9 arg1Of Performance,of
EnjuParser_R9 EnjuParser_T11 EnjuParser_T9 arg2Of Algorithms,of
EnjuParser_R10 EnjuParser_T11 EnjuParser_T10 arg1Of Algorithms,Four
EnjuParser_R11 EnjuParser_T0 EnjuParser_T12 arg1Of Effects,for
EnjuParser_R12 EnjuParser_T13 EnjuParser_T12 arg2Of Inference,for
EnjuParser_R13 EnjuParser_T13 EnjuParser_T14 arg1Of Inference,of
EnjuParser_R14 EnjuParser_T16 EnjuParser_T14 arg2Of Networks,of
EnjuParser_R15 EnjuParser_T16 EnjuParser_T15 arg1Of Networks,Association
EnjuParser_R16 EnjuParser_T16 EnjuParser_T17 arg1Of Networks,in
EnjuParser_R17 EnjuParser_T18 EnjuParser_T17 arg2Of Metabonomics,in
EnjuParser_R18 EnjuParser_T19 EnjuParser_T20 arg1Of We,investigated
EnjuParser_R19 EnjuParser_T22 EnjuParser_T20 arg2Of effect,investigated
EnjuParser_R20 EnjuParser_T22 EnjuParser_T21 arg1Of effect,the
EnjuParser_R21 EnjuParser_T22 EnjuParser_T23 arg1Of effect,of
EnjuParser_R22 EnjuParser_T26 EnjuParser_T23 arg2Of and,of
EnjuParser_R23 EnjuParser_T26 EnjuParser_T24 arg1Of and,sample
EnjuParser_R24 EnjuParser_T25 EnjuParser_T26 arg1Of size,and
EnjuParser_R25 EnjuParser_T27 EnjuParser_T26 arg2Of dimensionality,and
EnjuParser_R26 EnjuParser_T22 EnjuParser_T28 arg1Of effect,on
EnjuParser_R27 EnjuParser_T30 EnjuParser_T28 arg2Of performance,on
EnjuParser_R28 EnjuParser_T30 EnjuParser_T29 arg1Of performance,the
EnjuParser_R29 EnjuParser_T30 EnjuParser_T31 arg1Of performance,of
EnjuParser_R30 EnjuParser_T33 EnjuParser_T31 arg2Of algorithms,of
EnjuParser_R31 EnjuParser_T33 EnjuParser_T32 arg1Of algorithms,four
EnjuParser_R32 EnjuParser_T22 EnjuParser_T34 arg1Of effect,(
EnjuParser_R33 EnjuParser_T41 EnjuParser_T34 arg2Of and,(
EnjuParser_R34 EnjuParser_T43 EnjuParser_T34 arg3Of ),(
EnjuParser_R35 EnjuParser_T35 EnjuParser_T36 arg1Of ARACNE,","
EnjuParser_R36 EnjuParser_T37 EnjuParser_T36 arg2Of CLR,","
EnjuParser_R37 EnjuParser_T36 EnjuParser_T38 arg1Of ",",","
EnjuParser_R38 EnjuParser_T39 EnjuParser_T38 arg2Of CORR,","
EnjuParser_R39 EnjuParser_T41 EnjuParser_T40 arg1Of and,","
EnjuParser_R40 EnjuParser_T38 EnjuParser_T41 arg1Of ",",and
EnjuParser_R41 EnjuParser_T42 EnjuParser_T41 arg2Of PCLRC,and
EnjuParser_R42 EnjuParser_T20 EnjuParser_T44 arg1Of investigated,when
EnjuParser_R43 EnjuParser_T47 EnjuParser_T44 arg2Of used,when
EnjuParser_R44 EnjuParser_T45 EnjuParser_T46 arg1Of they,are
EnjuParser_R45 EnjuParser_T47 EnjuParser_T46 arg2Of used,are
EnjuParser_R46 EnjuParser_T45 EnjuParser_T47 arg2Of they,used
EnjuParser_R47 EnjuParser_T47 EnjuParser_T48 arg1Of used,for
EnjuParser_R48 EnjuParser_T50 EnjuParser_T48 arg2Of inference,for
EnjuParser_R49 EnjuParser_T50 EnjuParser_T49 arg1Of inference,the
EnjuParser_R50 EnjuParser_T50 EnjuParser_T51 arg1Of inference,of
EnjuParser_R51 EnjuParser_T54 EnjuParser_T51 arg2Of networks,of
EnjuParser_R52 EnjuParser_T54 EnjuParser_T52 arg1Of networks,metabolite
EnjuParser_R53 EnjuParser_T54 EnjuParser_T53 arg1Of networks,association
EnjuParser_R54 EnjuParser_T55 EnjuParser_T56 arg1Of We,report
EnjuParser_R55 EnjuParser_T64 EnjuParser_T56 arg2Of be,report
EnjuParser_R56 EnjuParser_T64 EnjuParser_T57 arg1Of be,that
EnjuParser_R57 EnjuParser_T62 EnjuParser_T58 arg1Of samples,as
EnjuParser_R58 EnjuParser_T62 EnjuParser_T59 arg1Of samples,many
EnjuParser_R59 EnjuParser_T62 EnjuParser_T60 arg1Of samples,as
EnjuParser_R60 EnjuParser_T62 EnjuParser_T61 arg1Of samples,100-400
EnjuParser_R61 EnjuParser_T62 EnjuParser_T63 arg1Of samples,may
EnjuParser_R62 EnjuParser_T64 EnjuParser_T63 arg2Of be,may
EnjuParser_R63 EnjuParser_T62 EnjuParser_T64 arg1Of samples,be
EnjuParser_R64 EnjuParser_T65 EnjuParser_T64 arg2Of necessary,be
EnjuParser_R65 EnjuParser_T62 EnjuParser_T65 arg1Of samples,necessary
EnjuParser_R66 EnjuParser_T67 EnjuParser_T66 arg1Of obtain,to
EnjuParser_R67 EnjuParser_T64 EnjuParser_T66 modOf be,to
EnjuParser_R68 EnjuParser_T70 EnjuParser_T67 arg2Of estimations,obtain
EnjuParser_R69 EnjuParser_T70 EnjuParser_T68 arg1Of estimations,stable
EnjuParser_R70 EnjuParser_T70 EnjuParser_T69 arg1Of estimations,network
EnjuParser_R71 EnjuParser_T64 EnjuParser_T71 arg1Of be,","
EnjuParser_R72 EnjuParser_T64 EnjuParser_T72 arg1Of be,depending
EnjuParser_R73 EnjuParser_T73 EnjuParser_T72 arg2Of on,depending
EnjuParser_R74 EnjuParser_T76 EnjuParser_T73 arg2Of and,on
EnjuParser_R75 EnjuParser_T75 EnjuParser_T74 arg1Of algorithm,the
EnjuParser_R76 EnjuParser_T75 EnjuParser_T76 arg1Of algorithm,and
EnjuParser_R77 EnjuParser_T78 EnjuParser_T76 arg2Of number,and
EnjuParser_R78 EnjuParser_T78 EnjuParser_T77 arg1Of number,the
EnjuParser_R79 EnjuParser_T78 EnjuParser_T79 arg1Of number,of
EnjuParser_R80 EnjuParser_T81 EnjuParser_T79 arg2Of metabolites,of
EnjuParser_R81 EnjuParser_T81 EnjuParser_T80 arg2Of metabolites,measured
EnjuParser_R82 EnjuParser_T86 EnjuParser_T82 arg1Of methods,The
EnjuParser_R83 EnjuParser_T86 EnjuParser_T83 arg1Of methods,CLR
EnjuParser_R84 EnjuParser_T83 EnjuParser_T84 arg1Of CLR,and
EnjuParser_R85 EnjuParser_T85 EnjuParser_T84 arg2Of PCLRC,and
EnjuParser_R86 EnjuParser_T86 EnjuParser_T85 arg1Of methods,PCLRC
EnjuParser_R87 EnjuParser_T86 EnjuParser_T87 arg1Of methods,produce
EnjuParser_R88 EnjuParser_T89 EnjuParser_T87 arg2Of results,produce
EnjuParser_R89 EnjuParser_T89 EnjuParser_T88 arg1Of results,similar
EnjuParser_R90 EnjuParser_T87 EnjuParser_T90 arg1Of produce,","
EnjuParser_R91 EnjuParser_T87 EnjuParser_T91 arg1Of produce,whereas
EnjuParser_R92 EnjuParser_T97 EnjuParser_T91 arg2Of provides,whereas
EnjuParser_R93 EnjuParser_T93 EnjuParser_T92 arg1Of inference,network
EnjuParser_R94 EnjuParser_T93 EnjuParser_T94 arg2Of inference,based
EnjuParser_R95 EnjuParser_T94 EnjuParser_T95 arg1Of based,on
EnjuParser_R96 EnjuParser_T96 EnjuParser_T95 arg2Of correlations,on
EnjuParser_R97 EnjuParser_T93 EnjuParser_T97 arg1Of inference,provides
EnjuParser_R98 EnjuParser_T99 EnjuParser_T97 arg2Of networks,provides
EnjuParser_R99 EnjuParser_T99 EnjuParser_T98 arg1Of networks,sparse
EnjuParser_R100 EnjuParser_T97 EnjuParser_T100 arg1Of provides,;
EnjuParser_R101 EnjuParser_T102 EnjuParser_T100 arg2Of found,;
EnjuParser_R102 EnjuParser_T101 EnjuParser_T102 arg1Of we,found
EnjuParser_R103 EnjuParser_T103 EnjuParser_T102 arg2Of ARACNE,found
EnjuParser_R104 EnjuParser_T111 EnjuParser_T102 arg3Of being,found
EnjuParser_R105 EnjuParser_T105 EnjuParser_T104 arg1Of be,to
EnjuParser_R106 EnjuParser_T103 EnjuParser_T104 modOf ARACNE,to
EnjuParser_R107 EnjuParser_T106 EnjuParser_T105 arg2Of unsuitable,be
EnjuParser_R108 EnjuParser_T106 EnjuParser_T107 arg1Of unsuitable,for
EnjuParser_R109 EnjuParser_T109 EnjuParser_T107 arg2Of application,for
EnjuParser_R110 EnjuParser_T109 EnjuParser_T108 arg1Of application,this
EnjuParser_R111 EnjuParser_T102 EnjuParser_T110 arg1Of found,","
EnjuParser_R112 EnjuParser_T103 EnjuParser_T111 arg1Of ARACNE,being
EnjuParser_R113 EnjuParser_T112 EnjuParser_T111 arg2Of unable,being
EnjuParser_R114 EnjuParser_T103 EnjuParser_T112 arg1Of ARACNE,unable
EnjuParser_R115 EnjuParser_T114 EnjuParser_T112 arg2Of recover,unable
EnjuParser_R116 EnjuParser_T114 EnjuParser_T113 arg1Of recover,to
EnjuParser_R117 EnjuParser_T103 EnjuParser_T114 arg1Of ARACNE,recover
EnjuParser_R118 EnjuParser_T119 EnjuParser_T114 arg2Of network,recover
EnjuParser_R119 EnjuParser_T119 EnjuParser_T115 arg1Of network,the
EnjuParser_R120 EnjuParser_T119 EnjuParser_T116 arg1Of network,underlying
EnjuParser_R121 EnjuParser_T119 EnjuParser_T117 arg1Of network,metabolite
EnjuParser_R122 EnjuParser_T119 EnjuParser_T118 arg1Of network,association
EnjuParser_R123 EnjuParser_T120 EnjuParser_T121 arg1Of We,recommend
EnjuParser_R124 EnjuParser_T124 EnjuParser_T121 arg2Of algorithm,recommend
EnjuParser_R125 EnjuParser_T124 EnjuParser_T122 arg1Of algorithm,the
EnjuParser_R126 EnjuParser_T124 EnjuParser_T123 arg1Of algorithm,PCLRC
EnjuParser_R127 EnjuParser_T121 EnjuParser_T125 arg1Of recommend,for
EnjuParser_R128 EnjuParser_T127 EnjuParser_T125 arg2Of inference,for
EnjuParser_R129 EnjuParser_T127 EnjuParser_T126 arg1Of inference,the
EnjuParser_R130 EnjuParser_T127 EnjuParser_T128 arg1Of inference,on
EnjuParser_R131 EnjuParser_T131 EnjuParser_T128 arg2Of networks,on
EnjuParser_R132 EnjuParser_T131 EnjuParser_T129 arg1Of networks,metabolite
EnjuParser_R133 EnjuParser_T131 EnjuParser_T130 arg1Of networks,association