PubMed:26296966
Annnotations
pqqtest_sentence
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 47-73 | cand:funRiceGene:135-heading date | denotes | Heading date 1 Degradation |
| M_1 | 47-73 | cand:WTO:0000017-early heading | denotes | Heading date 1 Degradation |
| M_2 | 47-73 | cand:PO:0007060-obsolete growth and development terms | denotes | Heading date 1 Degradation |
| M_3 | 47-73 | cand:WTO:0000034-late heading | denotes | Heading date 1 Degradation |
| M_4 | 47-73 | cand:TO:0000137-days to heading | denotes | Heading date 1 Degradation |
| M_5 | 47-73 | cand:PO:0009012-plant structure development stage | denotes | Heading date 1 Degradation |
| M_6 | 47-73 | cand:TO:0000202-germination ratio | denotes | Heading date 1 Degradation |
| M_7 | 47-73 | cand:TO:0012010-leaf area duration | denotes | Heading date 1 Degradation |
| M_8 | 47-73 | cand:WTO:0000018-early maturation | denotes | Heading date 1 Degradation |
| M_9 | 47-73 | cand:funRiceGene:410-cell fate transition | denotes | Heading date 1 Degradation |
| M_10 | 995-1023 | cand:funRiceGene:135-heading date | denotes | later flowering heading date |
| M_11 | 995-1023 | cand:funRiceGene:196-flowering time | denotes | later flowering heading date |
| M_12 | 995-1023 | cand:WTO:0000017-early heading | denotes | later flowering heading date |
| M_13 | 995-1023 | cand:TO:0002616-flowering time trait | denotes | later flowering heading date |
| M_14 | 995-1023 | cand:WTO:0000034-late heading | denotes | later flowering heading date |
| M_15 | 995-1023 | cand:WTO:0000016-early flowering | denotes | later flowering heading date |
| M_16 | 995-1023 | cand:PO:0007616-flowering stage | denotes | later flowering heading date |
| M_17 | 995-1023 | cand:PPO:0002638-open flower heads absent | denotes | later flowering heading date |
| M_18 | 995-1023 | cand:TO:0000344-days to flowering trait | denotes | later flowering heading date |
| M_19 | 995-1023 | cand:PPO:0001038-open flower head | denotes | later flowering heading date |
| M_20 | 995-1023 | cand:WTO:0000033-late flowering | denotes | later flowering heading date |
| M_21 | 33-37 | GeneID:RAPID:Os04g0648800MSUID:LOC_Os04g55510 | denotes | HAF1 |
| M_22 | 972-976 | GeneID:RAPID:Os04g0648800MSUID:LOC_Os04g55510 | denotes | haf1 |
| M_32 | 1497-1508 | WTO:0000097 | denotes | photoperiod |
| T73725 | 1145-1165 | xzyao:39954 | denotes | short-day conditions |
| T1573 | 1316-1336 | xzyao:39954 | denotes | short-day conditions |
| T15227 | 212-224 | xzyao:1553 | denotes | Oryza sativa |
| T89645 | 95-104 | funRiceGene:504 | denotes | Flowering |
| T30438 | 268-277 | funRiceGene:504 | denotes | flowering |
| T91778 | 385-394 | funRiceGene:504 | denotes | flowering |
| T71954 | 1001-1010 | funRiceGene:504 | denotes | flowering |
| T89418 | 16-25 | funRiceGene:10 | denotes | Ubiquitin |
| T29170 | 769-778 | funRiceGene:10 | denotes | ubiquitin |
| T52371 | 695-715 | xzyao:3964 | denotes | photoperiod response |
| T38842 | 1497-1517 | xzyao:3964 | denotes | photoperiod response |
| T28965 | 81-104 | xzyao:34227 | denotes | Photoperiodic Flowering |
| T72145 | 1348-1359 | xzyao:43242 | denotes | high levels |
| T32827 | 268-282 | funRiceGene:89, xzyao:5715 | denotes | flowering time |
| T41644 | 245-264 | xzyao:38569 | denotes | expression patterns |
| T44744 | 47-59 | funRiceGene:38, xzyao:27536 | denotes | Heading date |
| T43605 | 190-202 | funRiceGene:38, xzyao:27536 | denotes | heading date |
| T50785 | 442-454 | funRiceGene:38, xzyao:27536 | denotes | Heading date |
| T77975 | 787-799 | funRiceGene:38, xzyao:27536 | denotes | Heading date |
| T31087 | 1011-1023 | funRiceGene:38, xzyao:27536 | denotes | heading date |
| T67533 | 1182-1194 | funRiceGene:38, xzyao:27536 | denotes | heading date |
| T26930 | 1278-1290 | funRiceGene:38, xzyao:27536 | denotes | heading date |
| T37372 | 473-477 | funRiceGene:240 | denotes | zinc |
| M_23 | 485-505 | funRiceGene:298, xzyao:14211 | denotes | transcription factor |
| M_24 | 47-73 | xzyao:38362 | denotes | Heading date 1 Degradation |
| M_25 | 995-1010 | xzyao:4406 | denotes | later flowering |
| M_26 | 118-140 | xzyao:4937 | denotes | photoperiodic response |
| M_27 | 325-347 | xzyao:4937 | denotes | photoperiodic response |
| M_28 | 539-561 | xzyao:4937 | denotes | photoperiodic response |
| M_29 | 995-1023 | xzyao:14698 | denotes | later flowering heading date |
| M_30 | 1087-1109 | xzyao:20653 | denotes | haf1 hd1 double mutant |
| M_31 | 695-706 | WTO:0000097 | denotes | photoperiod |
| M_33 | 594-606 | funRiceGene:190 | denotes | adaptability |
| M_34 | 473-477 | hunflair:NA:Chemical | denotes | zinc |
| M_35 | 47-61 | hunflair:NA:Gene | denotes | Heading date 1 |
| M_36 | 442-456 | hunflair:NA:Gene | denotes | Heading date 1 |
| M_37 | 787-819 | hunflair:NA:Gene | denotes | Heading date Associated Factor 1 |
| M_38 | 972-976 | hunflair:NA:Gene | denotes | haf1 |
| M_39 | 1087-1091 | hunflair:NA:Gene | denotes | haf1 |
| M_40 | 1206-1210 | hunflair:NA:Gene | denotes | haf1 |
| M_41 | 1381-1385 | hunflair:NA:Gene | denotes | haf1 |
| M_42 | 1092-1095 | hunflair:NA:Gene | denotes | hd1 |
| M_43 | 1128-1131 | hunflair:NA:Gene | denotes | hd1 |
| M_44 | 458-461 | hunflair:NA:Gene | denotes | Hd1 |
| M_45 | 667-670 | hunflair:NA:Gene | denotes | Hd1 |
| M_46 | 860-863 | hunflair:NA:Gene | denotes | Hd1 |
| M_47 | 906-909 | hunflair:NA:Gene | denotes | Hd1 |
| M_48 | 1306-1309 | hunflair:NA:Gene | denotes | Hd1 |
| M_49 | 1363-1366 | hunflair:NA:Gene | denotes | Hd1 |
| M_50 | 1469-1472 | hunflair:NA:Gene | denotes | Hd1 |
| M_51 | 473-505 | hunflair:NA:Gene | denotes | zinc finger transcription factor |
| M_52 | 108-112 | hunflair:NA:Species | denotes | Rice |
| M_53 | 212-224 | hunflair:NA:Species | denotes | Oryza sativa |
| M_54 | 33-37 | hunflair:NA:Gene | denotes | HAF1 |
| M_55 | 821-825 | hunflair:NA:Gene | denotes | HAF1 |
| M_56 | 865-869 | hunflair:NA:Gene | denotes | HAF1 |
| M_57 | 1259-1263 | hunflair:NA:Gene | denotes | HAF1 |
| M_58 | 1412-1416 | hunflair:NA:Gene | denotes | HAF1 |
| M_59 | 206-210 | hunflair:NA:Species | denotes | rice |
| M_60 | 436-440 | hunflair:NA:Species | denotes | rice |
| M_61 | 580-584 | hunflair:NA:Species | denotes | rice |
| M_62 | 1521-1525 | hunflair:NA:Species | denotes | rice |
| M_63 | 212-224 | pubtator:4530:Species | denotes | Oryza sativa |
| M_64 | 206-210 | pubtator:4530:Species | denotes | rice |
| M_65 | 436-440 | pubtator:4530:Species | denotes | rice |
| M_66 | 580-584 | pubtator:4530:Species | denotes | rice |
| M_67 | 1521-1525 | pubtator:4530:Species | denotes | rice |
| M_68 | 108-112 | pubtator:4530:Species | denotes | Rice |
21k_plant_trait_mention
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 485-505 | funRiceGene:298, xzyao:12559 | denotes | transcription factor |
| M_1 | 1497-1517 | xzyao:8271 | denotes | photoperiod response |
| M_2 | 268-282 | funRiceGene:89, xzyao:17041 | denotes | flowering time |
| M_3 | 473-477 | funRiceGene:240 | denotes | zinc |
| M_4 | 769-778 | funRiceGene:10 | denotes | ubiquitin |
| M_5 | 190-202 | funRiceGene:38, xzyao:4335 | denotes | heading date |
| M_6 | 442-454 | funRiceGene:38, xzyao:4335 | denotes | Heading date |
| M_7 | 787-799 | funRiceGene:38, xzyao:4335 | denotes | Heading date |
| M_8 | 1011-1023 | funRiceGene:38, xzyao:4335 | denotes | heading date |
| M_9 | 1182-1194 | funRiceGene:38, xzyao:4335 | denotes | heading date |
| M_10 | 1278-1290 | funRiceGene:38, xzyao:4335 | denotes | heading date |
| M_11 | 695-706 | WTO:0000097 | denotes | photoperiod |
| M_12 | 1497-1508 | WTO:0000097 | denotes | photoperiod |
| M_13 | 268-277 | funRiceGene:504 | denotes | flowering |
| M_14 | 385-394 | funRiceGene:504 | denotes | flowering |
| M_15 | 1001-1010 | funRiceGene:504 | denotes | flowering |
| M_16 | 268-288 | xzyao:11280 | denotes | flowering time genes |
| M_17 | 458-461 | hunflair:NA:Gene | denotes | Hd1 |
| M_18 | 667-670 | hunflair:NA:Gene | denotes | Hd1 |
| M_19 | 860-863 | hunflair:NA:Gene | denotes | Hd1 |
| M_20 | 906-909 | hunflair:NA:Gene | denotes | Hd1 |
| M_21 | 1306-1309 | hunflair:NA:Gene | denotes | Hd1 |
| M_22 | 1363-1366 | hunflair:NA:Gene | denotes | Hd1 |
| M_23 | 1469-1472 | hunflair:NA:Gene | denotes | Hd1 |
| M_24 | 212-224 | hunflair:NA:Species | denotes | Oryza sativa |
| M_25 | 473-505 | hunflair:NA:Gene | denotes | zinc finger transcription factor |
| M_26 | 1092-1095 | hunflair:NA:Gene | denotes | hd1 |
| M_27 | 1128-1131 | hunflair:NA:Gene | denotes | hd1 |
| M_28 | 473-477 | hunflair:NA:Chemical | denotes | zinc |
| M_29 | 206-210 | hunflair:NA:Species | denotes | rice |
| M_30 | 436-440 | hunflair:NA:Species | denotes | rice |
| M_31 | 580-584 | hunflair:NA:Species | denotes | rice |
| M_32 | 1521-1525 | hunflair:NA:Species | denotes | rice |
| M_33 | 972-976 | hunflair:NA:Gene | denotes | haf1 |
| M_34 | 1087-1091 | hunflair:NA:Gene | denotes | haf1 |
| M_35 | 1206-1210 | hunflair:NA:Gene | denotes | haf1 |
| M_36 | 1381-1385 | hunflair:NA:Gene | denotes | haf1 |
| M_37 | 47-61 | hunflair:NA:Gene | denotes | Heading date 1 |
| M_38 | 442-456 | hunflair:NA:Gene | denotes | Heading date 1 |
| M_39 | 108-112 | hunflair:NA:Species | denotes | Rice |
| M_40 | 33-37 | hunflair:NA:Gene | denotes | HAF1 |
| M_41 | 821-825 | hunflair:NA:Gene | denotes | HAF1 |
| M_42 | 865-869 | hunflair:NA:Gene | denotes | HAF1 |
| M_43 | 1259-1263 | hunflair:NA:Gene | denotes | HAF1 |
| M_44 | 1412-1416 | hunflair:NA:Gene | denotes | HAF1 |
| M_45 | 787-819 | hunflair:NA:Gene | denotes | Heading date Associated Factor 1 |
| M_46 | 212-224 | pubtator:4530:Species | denotes | Oryza sativa |
| M_47 | 108-112 | pubtator:4530:Species | denotes | Rice |
| M_48 | 206-210 | pubtator:4530:Species | denotes | rice |
| M_49 | 436-440 | pubtator:4530:Species | denotes | rice |
| M_50 | 580-584 | pubtator:4530:Species | denotes | rice |
| M_51 | 1521-1525 | pubtator:4530:Species | denotes | rice |
OryzaGP_2021
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 16-25 | http://identifiers.org/oryzabase.gene/7107 | denotes | Ubiquitin |
| T2 | 16-25 | http://identifiers.org/oryzabase.gene/17712 | denotes | Ubiquitin |
| T3 | 33-37 | http://identifiers.org/oryzabase.gene/14741 | denotes | HAF1 |
| T4 | 47-61 | http://identifiers.org/oryzabase.gene/779 | denotes | Heading date 1 |
| T5 | 190-202 | http://identifiers.org/oryzabase.gene/760 | denotes | heading date |
| T6 | 190-202 | http://identifiers.org/oryzabase.gene/6355 | denotes | heading date |
| T7 | 442-456 | http://identifiers.org/oryzabase.gene/779 | denotes | Heading date 1 |
| T8 | 458-461 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T9 | 458-461 | http://identifiers.org/oryzabase.gene/779 | denotes | Hd1 |
| T10 | 473-484 | http://identifiers.org/oryzabase.gene/23616 | denotes | zinc finger |
| T11 | 667-670 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T12 | 667-670 | http://identifiers.org/oryzabase.gene/779 | denotes | Hd1 |
| T13 | 743-785 | http://identifiers.org/oryzabase.gene/15297 | denotes | RING domain-containing E3 ubiquitin ligase |
| T14 | 787-819 | http://identifiers.org/oryzabase.gene/14741 | denotes | Heading date Associated Factor 1 |
| T15 | 821-825 | http://identifiers.org/oryzabase.gene/14741 | denotes | HAF1 |
| T16 | 860-863 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T17 | 860-863 | http://identifiers.org/oryzabase.gene/779 | denotes | Hd1 |
| T18 | 865-869 | http://identifiers.org/oryzabase.gene/14741 | denotes | HAF1 |
| T19 | 906-909 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T20 | 906-909 | http://identifiers.org/oryzabase.gene/779 | denotes | Hd1 |
| T21 | 938-948 | http://identifiers.org/oryzabase.gene/16768 | denotes | proteasome |
| T22 | 972-976 | http://identifiers.org/oryzabase.gene/14741 | denotes | haf1 |
| T23 | 1011-1023 | http://identifiers.org/oryzabase.gene/760 | denotes | heading date |
| T24 | 1011-1023 | http://identifiers.org/oryzabase.gene/6355 | denotes | heading date |
| T25 | 1087-1091 | http://identifiers.org/oryzabase.gene/14741 | denotes | haf1 |
| T26 | 1092-1095 | http://identifiers.org/oryzabase.gene/760 | denotes | hd1 |
| T27 | 1128-1131 | http://identifiers.org/oryzabase.gene/760 | denotes | hd1 |
| T28 | 1182-1194 | http://identifiers.org/oryzabase.gene/760 | denotes | heading date |
| T29 | 1182-1194 | http://identifiers.org/oryzabase.gene/6355 | denotes | heading date |
| T30 | 1206-1210 | http://identifiers.org/oryzabase.gene/14741 | denotes | haf1 |
| T31 | 1259-1263 | http://identifiers.org/oryzabase.gene/14741 | denotes | HAF1 |
| T32 | 1278-1290 | http://identifiers.org/oryzabase.gene/760 | denotes | heading date |
| T33 | 1278-1290 | http://identifiers.org/oryzabase.gene/6355 | denotes | heading date |
| T34 | 1306-1309 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T35 | 1306-1309 | http://identifiers.org/oryzabase.gene/779 | denotes | Hd1 |
| T36 | 1363-1366 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T37 | 1363-1366 | http://identifiers.org/oryzabase.gene/779 | denotes | Hd1 |
| T38 | 1381-1385 | http://identifiers.org/oryzabase.gene/14741 | denotes | haf1 |
| T39 | 1412-1416 | http://identifiers.org/oryzabase.gene/14741 | denotes | HAF1 |
| T40 | 1469-1472 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T41 | 1469-1472 | http://identifiers.org/oryzabase.gene/779 | denotes | Hd1 |
| T5232 | 16-25 | http://identifiers.org/ricegap/LOC_Os09g39500 | denotes | Ubiquitin |
| T15978 | 16-25 | http://identifiers.org/ricegap/LOC_Os06g44080 | denotes | Ubiquitin |
| T90698 | 33-37 | http://identifiers.org/ricegap/LOC_Os04g55510 | denotes | HAF1 |
| T13892 | 47-59 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | Heading date |
| T47508 | 190-202 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | heading date |
| T25884 | 442-454 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | Heading date |
| T36960 | 458-461 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | Hd1 |
| T97263 | 473-484 | http://identifiers.org/ricegap/LOC_Os01g50750 | denotes | zinc finger |
| T84037 | 667-670 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | Hd1 |
| T75804 | 743-785 | http://identifiers.org/ricegap/LOC_Os10g30850 | denotes | RING domain-containing E3 ubiquitin ligase |
| T90828 | 787-819 | http://identifiers.org/ricegap/LOC_Os04g55510 | denotes | Heading date Associated Factor 1 |
| T4676 | 821-825 | http://identifiers.org/ricegap/LOC_Os04g55510 | denotes | HAF1 |
| T80721 | 860-863 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | Hd1 |
| T26490 | 865-869 | http://identifiers.org/ricegap/LOC_Os04g55510 | denotes | HAF1 |
| T25565 | 879-893 | http://identifiers.org/ricegap/LOC_Os09g39500 | denotes | ubiquitination |
| T98902 | 879-893 | http://identifiers.org/ricegap/LOC_Os06g44080 | denotes | ubiquitination |
| T66804 | 906-909 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | Hd1 |
| T68433 | 938-948 | http://identifiers.org/ricegap/LOC_Os09g38730 | denotes | proteasome |
| T71072 | 972-976 | http://identifiers.org/ricegap/LOC_Os04g55510 | denotes | haf1 |
| T52661 | 1011-1023 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | heading date |
| T12857 | 1087-1091 | http://identifiers.org/ricegap/LOC_Os04g55510 | denotes | haf1 |
| T75291 | 1092-1095 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | hd1 |
| T34834 | 1128-1131 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | hd1 |
| T2548 | 1182-1194 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | heading date |
| T19900 | 1206-1210 | http://identifiers.org/ricegap/LOC_Os04g55510 | denotes | haf1 |
| T26403 | 1259-1263 | http://identifiers.org/ricegap/LOC_Os04g55510 | denotes | HAF1 |
| T71464 | 1278-1290 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | heading date |
| T52050 | 1306-1309 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | Hd1 |
| T3180 | 1363-1366 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | Hd1 |
| T40464 | 1381-1385 | http://identifiers.org/ricegap/LOC_Os04g55510 | denotes | haf1 |
| T51787 | 1412-1416 | http://identifiers.org/ricegap/LOC_Os04g55510 | denotes | HAF1 |
| T35985 | 1469-1472 | http://identifiers.org/ricegap/LOC_Os06g16370 | denotes | Hd1 |
| T28381 | 16-25 | http://identifiers.org/rapdb.locus/Os09g0568400 | denotes | Ubiquitin |
| T64758 | 16-25 | http://identifiers.org/rapdb.locus/Os06g0650100 | denotes | Ubiquitin |
| T30639 | 33-37 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | HAF1 |
| T5760 | 47-59 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Heading date |
| T26402 | 190-202 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | heading date |
| T85903 | 442-454 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Heading date |
| T38888 | 458-461 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
| T90662 | 473-484 | http://identifiers.org/rapdb.locus/Os01g0703300 | denotes | zinc finger |
| T82161 | 667-670 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
| T45453 | 743-785 | http://identifiers.org/rapdb.locus/Os10g0445400 | denotes | RING domain-containing E3 ubiquitin ligase |
| T16781 | 787-819 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | Heading date Associated Factor 1 |
| T52769 | 821-825 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | HAF1 |
| T99383 | 860-863 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
| T89947 | 865-869 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | HAF1 |
| T73548 | 879-893 | http://identifiers.org/rapdb.locus/Os09g0568400 | denotes | ubiquitination |
| T55835 | 879-893 | http://identifiers.org/rapdb.locus/Os06g0650100 | denotes | ubiquitination |
| T72409 | 906-909 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
| T23271 | 938-948 | http://identifiers.org/rapdb.locus/Os09g0560200 | denotes | proteasome |
| T70272 | 972-976 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | haf1 |
| T46815 | 1011-1023 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | heading date |
| T90491 | 1087-1091 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | haf1 |
| T77816 | 1092-1095 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | hd1 |
| T87621 | 1128-1131 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | hd1 |
| T74132 | 1182-1194 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | heading date |
| T62723 | 1206-1210 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | haf1 |
| T91488 | 1259-1263 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | HAF1 |
| T86251 | 1278-1290 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | heading date |
| T34810 | 1306-1309 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
| T37038 | 1363-1366 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
| T58711 | 1381-1385 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | haf1 |
| T29330 | 1412-1416 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | HAF1 |
| T74119 | 1469-1472 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
| T56966 | 16-25 | http://identifiers.org/uniprot/Q7XYD4 | denotes | Ubiquitin |
| T22699 | 16-25 | http://identifiers.org/uniprot/P0C031 | denotes | Ubiquitin |
| T58990 | 33-37 | http://identifiers.org/uniprot/Q7XTV7 | denotes | HAF1 |
| T59128 | 33-37 | http://identifiers.org/uniprot/B6SW07 | denotes | HAF1 |
| T27640 | 47-59 | http://identifiers.org/uniprot/Q9FDX8 | denotes | Heading date |
| T68650 | 442-454 | http://identifiers.org/uniprot/Q9FDX8 | denotes | Heading date |
| T85108 | 458-461 | http://identifiers.org/uniprot/Q9FDX8 | denotes | Hd1 |
| T51159 | 667-670 | http://identifiers.org/uniprot/Q9FDX8 | denotes | Hd1 |
| T47082 | 743-785 | http://identifiers.org/uniprot/Q337S3 | denotes | RING domain-containing E3 ubiquitin ligase |
| T36429 | 787-819 | http://identifiers.org/uniprot/Q7XTV7 | denotes | Heading date Associated Factor 1 |
| T53253 | 787-819 | http://identifiers.org/uniprot/B6SW07 | denotes | Heading date Associated Factor 1 |
| T23903 | 821-825 | http://identifiers.org/uniprot/Q7XTV7 | denotes | HAF1 |
| T71208 | 821-825 | http://identifiers.org/uniprot/B6SW07 | denotes | HAF1 |
| T22272 | 860-863 | http://identifiers.org/uniprot/Q9FDX8 | denotes | Hd1 |
| T53189 | 865-869 | http://identifiers.org/uniprot/Q7XTV7 | denotes | HAF1 |
| T71754 | 865-869 | http://identifiers.org/uniprot/B6SW07 | denotes | HAF1 |
| T88035 | 906-909 | http://identifiers.org/uniprot/Q9FDX8 | denotes | Hd1 |
| T23477 | 938-948 | http://identifiers.org/refseq/NP_200637.1 | denotes | proteasome |
| T15808 | 1259-1263 | http://identifiers.org/uniprot/Q7XTV7 | denotes | HAF1 |
| T93050 | 1259-1263 | http://identifiers.org/uniprot/B6SW07 | denotes | HAF1 |
| T59277 | 1306-1309 | http://identifiers.org/uniprot/Q9FDX8 | denotes | Hd1 |
| T4592 | 1363-1366 | http://identifiers.org/uniprot/Q9FDX8 | denotes | Hd1 |
| T26865 | 1412-1416 | http://identifiers.org/uniprot/Q7XTV7 | denotes | HAF1 |
| T59745 | 1412-1416 | http://identifiers.org/uniprot/B6SW07 | denotes | HAF1 |
| T90049 | 1469-1472 | http://identifiers.org/uniprot/Q9FDX8 | denotes | Hd1 |
| M_0 | 47-61 | hunflair:NA:Gene | denotes | Heading date 1 |
| M_1 | 442-456 | hunflair:NA:Gene | denotes | Heading date 1 |
| M_2 | 33-37 | hunflair:NA:Gene | denotes | HAF1 |
| M_3 | 821-825 | hunflair:NA:Gene | denotes | HAF1 |
| M_4 | 865-869 | hunflair:NA:Gene | denotes | HAF1 |
| M_5 | 1259-1263 | hunflair:NA:Gene | denotes | HAF1 |
| M_6 | 1412-1416 | hunflair:NA:Gene | denotes | HAF1 |
| M_7 | 212-224 | hunflair:NA:Species | denotes | Oryza sativa |
| M_8 | 108-112 | hunflair:NA:Species | denotes | Rice |
| M_9 | 473-505 | hunflair:NA:Gene | denotes | zinc finger transcription factor |
| M_10 | 787-819 | hunflair:NA:Gene | denotes | Heading date Associated Factor 1 |
| M_11 | 473-477 | hunflair:NA:Chemical | denotes | zinc |
| M_12 | 206-210 | hunflair:NA:Species | denotes | rice |
| M_13 | 436-440 | hunflair:NA:Species | denotes | rice |
| M_14 | 580-584 | hunflair:NA:Species | denotes | rice |
| M_15 | 1521-1525 | hunflair:NA:Species | denotes | rice |
| M_16 | 1092-1095 | hunflair:NA:Gene | denotes | hd1 |
| M_17 | 1128-1131 | hunflair:NA:Gene | denotes | hd1 |
| M_18 | 972-976 | hunflair:NA:Gene | denotes | haf1 |
| M_19 | 1087-1091 | hunflair:NA:Gene | denotes | haf1 |
| M_20 | 1206-1210 | hunflair:NA:Gene | denotes | haf1 |
| M_21 | 1381-1385 | hunflair:NA:Gene | denotes | haf1 |
| M_22 | 458-461 | hunflair:NA:Gene | denotes | Hd1 |
| M_23 | 667-670 | hunflair:NA:Gene | denotes | Hd1 |
| M_24 | 860-863 | hunflair:NA:Gene | denotes | Hd1 |
| M_25 | 906-909 | hunflair:NA:Gene | denotes | Hd1 |
| M_26 | 1306-1309 | hunflair:NA:Gene | denotes | Hd1 |
| M_27 | 1363-1366 | hunflair:NA:Gene | denotes | Hd1 |
| M_28 | 1469-1472 | hunflair:NA:Gene | denotes | Hd1 |
OryzaGP_2022
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 16-25 | http://identifiers.org/oryzabase.gene/17712 | denotes | Ubiquitin |
| T2 | 47-61 | http://identifiers.org/oryzabase.gene/779 | denotes | Heading date 1 |
| T3 | 190-202 | http://identifiers.org/oryzabase.gene/6355 | denotes | heading date |
| T4 | 442-456 | http://identifiers.org/oryzabase.gene/779 | denotes | Heading date 1 |
| T5 | 473-484 | http://identifiers.org/oryzabase.gene/23616 | denotes | zinc finger |
| T6 | 769-778 | http://identifiers.org/oryzabase.gene/17712 | denotes | ubiquitin |
| T7 | 787-799 | http://identifiers.org/oryzabase.gene/6355 | denotes | Heading date |
| T8 | 818-819 | http://identifiers.org/oryzabase.gene/11216 | denotes | 1 |
| T9 | 938-948 | http://identifiers.org/oryzabase.gene/16768 | denotes | proteasome |
| T10 | 1011-1023 | http://identifiers.org/oryzabase.gene/6355 | denotes | heading date |
| T11 | 1182-1194 | http://identifiers.org/oryzabase.gene/6355 | denotes | heading date |
| T12 | 1278-1290 | http://identifiers.org/oryzabase.gene/6355 | denotes | heading date |
OryzaGP_2021_v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 33-37 | http://identifiers.org/oryzabase.gene/14741 | denotes | HAF1 |
| T2 | 458-461 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T3 | 667-670 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T4 | 766-768 | http://identifiers.org/oryzabase.gene/524 | denotes | E3 |
| T5 | 821-825 | http://identifiers.org/oryzabase.gene/14741 | denotes | HAF1 |
| T6 | 860-863 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T7 | 865-869 | http://identifiers.org/oryzabase.gene/14741 | denotes | HAF1 |
| T8 | 906-909 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T9 | 1259-1263 | http://identifiers.org/oryzabase.gene/14741 | denotes | HAF1 |
| T10 | 1306-1309 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T11 | 1363-1366 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T12 | 1412-1416 | http://identifiers.org/oryzabase.gene/14741 | denotes | HAF1 |
| T13 | 1469-1472 | http://identifiers.org/oryzabase.gene/760 | denotes | Hd1 |
| T26078 | 33-37 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | HAF1 |
| T11051 | 458-461 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
| T9845 | 667-670 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
| T78526 | 821-825 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | HAF1 |
| T10397 | 860-863 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
| T47150 | 865-869 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | HAF1 |
| T28749 | 906-909 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
| T46533 | 1259-1263 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | HAF1 |
| T18710 | 1306-1309 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
| T3658 | 1363-1366 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
| T95625 | 1412-1416 | http://identifiers.org/rapdb.locus/Os04g0648800 | denotes | HAF1 |
| T36103 | 1469-1472 | http://identifiers.org/rapdb.locus/Os06g0275000 | denotes | Hd1 |
OryzaGP_2021_FLAIR
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 47-61 | hunflair:NA:Gene | denotes | Heading date 1 |
| M_1 | 442-456 | hunflair:NA:Gene | denotes | Heading date 1 |
| M_2 | 33-37 | hunflair:NA:Gene | denotes | HAF1 |
| M_3 | 821-825 | hunflair:NA:Gene | denotes | HAF1 |
| M_4 | 865-869 | hunflair:NA:Gene | denotes | HAF1 |
| M_5 | 1259-1263 | hunflair:NA:Gene | denotes | HAF1 |
| M_6 | 1412-1416 | hunflair:NA:Gene | denotes | HAF1 |
| M_7 | 212-224 | hunflair:NA:Species | denotes | Oryza sativa |
| M_8 | 108-112 | hunflair:NA:Species | denotes | Rice |
| M_9 | 473-505 | hunflair:NA:Gene | denotes | zinc finger transcription factor |
| M_10 | 787-819 | hunflair:NA:Gene | denotes | Heading date Associated Factor 1 |
| M_11 | 473-477 | hunflair:NA:Chemical | denotes | zinc |
| M_12 | 206-210 | hunflair:NA:Species | denotes | rice |
| M_13 | 436-440 | hunflair:NA:Species | denotes | rice |
| M_14 | 580-584 | hunflair:NA:Species | denotes | rice |
| M_15 | 1521-1525 | hunflair:NA:Species | denotes | rice |
| M_16 | 1092-1095 | hunflair:NA:Gene | denotes | hd1 |
| M_17 | 1128-1131 | hunflair:NA:Gene | denotes | hd1 |
| M_18 | 972-976 | hunflair:NA:Gene | denotes | haf1 |
| M_19 | 1087-1091 | hunflair:NA:Gene | denotes | haf1 |
| M_20 | 1206-1210 | hunflair:NA:Gene | denotes | haf1 |
| M_21 | 1381-1385 | hunflair:NA:Gene | denotes | haf1 |
| M_22 | 458-461 | hunflair:NA:Gene | denotes | Hd1 |
| M_23 | 667-670 | hunflair:NA:Gene | denotes | Hd1 |
| M_24 | 860-863 | hunflair:NA:Gene | denotes | Hd1 |
| M_25 | 906-909 | hunflair:NA:Gene | denotes | Hd1 |
| M_26 | 1306-1309 | hunflair:NA:Gene | denotes | Hd1 |
| M_27 | 1363-1366 | hunflair:NA:Gene | denotes | Hd1 |
| M_28 | 1469-1472 | hunflair:NA:Gene | denotes | Hd1 |
OryzaGP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 16-25 | gene | denotes | Ubiquitin |
| T2 | 33-37 | gene | denotes | HAF1 |
| T3 | 47-59 | gene | denotes | Heading date |
| T4 | 190-202 | gene | denotes | heading date |
| T5 | 667-670 | gene | denotes | Hd1 |
| T6 | 766-768 | gene | denotes | E3 |
| T7 | 769-778 | gene | denotes | ubiquitin |
| T8 | 787-799 | gene | denotes | Heading date |
| T9 | 821-825 | gene | denotes | HAF1 |
| T10 | 860-863 | gene | denotes | Hd1 |
| T11 | 865-869 | gene | denotes | HAF1 |
| T12 | 906-909 | gene | denotes | Hd1 |
| T13 | 936-937 | gene | denotes | S |
| T14 | 972-976 | gene | denotes | haf1 |
| T15 | 1011-1023 | gene | denotes | heading date |
| T16 | 1087-1091 | gene | denotes | haf1 |
| T17 | 1092-1095 | gene | denotes | hd1 |
| T18 | 1128-1131 | gene | denotes | hd1 |
| T19 | 1182-1194 | gene | denotes | heading date |
| T20 | 1206-1210 | gene | denotes | haf1 |
| T21 | 1259-1263 | gene | denotes | HAF1 |
| T22 | 1278-1290 | gene | denotes | heading date |
| T23 | 1306-1309 | gene | denotes | Hd1 |
| T24 | 1363-1366 | gene | denotes | Hd1 |
| T25 | 1381-1385 | gene | denotes | haf1 |
| T26 | 1412-1416 | gene | denotes | HAF1 |
| T27 | 1469-1472 | gene | denotes | Hd1 |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-113 | Sentence | denotes | The RING-Finger Ubiquitin Ligase HAF1 Mediates Heading date 1 Degradation during Photoperiodic Flowering in Rice. |
| T2 | 114-226 | Sentence | denotes | The photoperiodic response is one of the most important factors determining heading date in rice (Oryza sativa). |
| T3 | 227-441 | Sentence | denotes | Although rhythmic expression patterns of flowering time genes have been reported to fine-tune the photoperiodic response, posttranslational regulation of key flowering regulators has seldom been elucidated in rice. |
| T4 | 442-607 | Sentence | denotes | Heading date 1 (Hd1) encodes a zinc finger transcription factor that plays a crucial role in the photoperiodic response, which determines rice regional adaptability. |
| T5 | 608-716 | Sentence | denotes | However, little is known about the molecular mechanisms of Hd1 accumulation during the photoperiod response. |
| T6 | 717-864 | Sentence | denotes | Here, we identify a C3HC4 RING domain-containing E3 ubiquitin ligase, Heading date Associated Factor 1 (HAF1), which physically interacts with Hd1. |
| T7 | 865-967 | Sentence | denotes | HAF1 mediates ubiquitination and targets Hd1 for degradation via the 26S proteasome-dependent pathway. |
| T8 | 968-1069 | Sentence | denotes | The haf1 mutant exhibits a later flowering heading date under both short-day and long-day conditions. |
| T9 | 1070-1337 | Sentence | denotes | In addition, the haf1 hd1 double mutant headed as late as hd1 plants under short-day conditions but exhibited a heading date similar to haf1 under long-day conditions, thus indicating that HAF1 may determine heading date mainly through Hd1 under short-day conditions. |
| T10 | 1338-1386 | Sentence | denotes | Moreover, high levels of Hd1 accumulate in haf1. |
| T11 | 1387-1526 | Sentence | denotes | Our results suggest that HAF1 is essential to precise modulation of the timing of Hd1 accumulation during the photoperiod response in rice. |