PubMed:26033938
Annnotations
Glycan-Motif
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 690-699 | https://glytoucan.org/Structures/Glycans/G71832QJ | denotes | A antigen |
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 690-699 | Glycan_Motif | denotes | A antigen | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G71832QJ |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-47 | Sentence | denotes | Antibody recognition of carbohydrate epitopes†. |
| TextSentencer_T2 | 48-234 | Sentence | denotes | Carbohydrate antigens are valuable as components of vaccines for bacterial infectious agents and human immunodeficiency virus (HIV), and for generating immunotherapeutics against cancer. |
| TextSentencer_T3 | 235-452 | Sentence | denotes | The crystal structures of anti-carbohydrate antibodies in complex with antigen reveal the key features of antigen recognition and provide information that can guide the design of vaccines, particularly synthetic ones. |
| TextSentencer_T4 | 453-927 | Sentence | denotes | This review summarizes structural features of anti-carbohydrate antibodies to over 20 antigens, based on six categories of glyco-antigen: (i) the glycan shield of HIV glycoproteins; (ii) tumor epitopes; (iii) glycolipids and blood group A antigen; (iv) internal epitopes of bacterial lipopolysaccharides; (v) terminal epitopes on polysaccharides and oligosaccharides, including a group of antibodies to Kdo-containing Chlamydia epitopes; and (vi) linear homopolysaccharides. |
| T1 | 0-47 | Sentence | denotes | Antibody recognition of carbohydrate epitopes†. |
| T2 | 48-234 | Sentence | denotes | Carbohydrate antigens are valuable as components of vaccines for bacterial infectious agents and human immunodeficiency virus (HIV), and for generating immunotherapeutics against cancer. |
| T3 | 235-452 | Sentence | denotes | The crystal structures of anti-carbohydrate antibodies in complex with antigen reveal the key features of antigen recognition and provide information that can guide the design of vaccines, particularly synthetic ones. |
| T4 | 453-927 | Sentence | denotes | This review summarizes structural features of anti-carbohydrate antibodies to over 20 antigens, based on six categories of glyco-antigen: (i) the glycan shield of HIV glycoproteins; (ii) tumor epitopes; (iii) glycolipids and blood group A antigen; (iv) internal epitopes of bacterial lipopolysaccharides; (v) terminal epitopes on polysaccharides and oligosaccharides, including a group of antibodies to Kdo-containing Chlamydia epitopes; and (vi) linear homopolysaccharides. |
| T1 | 0-47 | Sentence | denotes | Antibody recognition of carbohydrate epitopes†. |
| T2 | 48-234 | Sentence | denotes | Carbohydrate antigens are valuable as components of vaccines for bacterial infectious agents and human immunodeficiency virus (HIV), and for generating immunotherapeutics against cancer. |
| T3 | 235-452 | Sentence | denotes | The crystal structures of anti-carbohydrate antibodies in complex with antigen reveal the key features of antigen recognition and provide information that can guide the design of vaccines, particularly synthetic ones. |
| T4 | 453-927 | Sentence | denotes | This review summarizes structural features of anti-carbohydrate antibodies to over 20 antigens, based on six categories of glyco-antigen: (i) the glycan shield of HIV glycoproteins; (ii) tumor epitopes; (iii) glycolipids and blood group A antigen; (iv) internal epitopes of bacterial lipopolysaccharides; (v) terminal epitopes on polysaccharides and oligosaccharides, including a group of antibodies to Kdo-containing Chlamydia epitopes; and (vi) linear homopolysaccharides. |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 690-699 | https://glytoucan.org/Structures/Glycans/G71832QJ | denotes | A antigen |
Glycosmos6-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 678-683 | http://purl.obolibrary.org/obo/MAT_0000083 | denotes | blood |
| T2 | 678-683 | http://purl.obolibrary.org/obo/MAT_0000315 | denotes | blood |
GlycoBiology-PACDB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| _T1 | 145-178 | http://acgg.asia/db/diseases/pacdb/lec?ids=LEC512 | denotes | human immunodeficiency virus (HIV |
ICD10
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 145-178 | http://purl.bioontology.org/ontology/ICD10/B24 | denotes | human immunodeficiency virus (HIV |
| T2 | 145-178 | http://purl.bioontology.org/ontology/ICD10/Z71.7 | denotes | human immunodeficiency virus (HIV |
| T3 | 145-178 | http://purl.bioontology.org/ontology/ICD10/B20-B24.9 | denotes | human immunodeficiency virus (HIV |
| T4 | 151-167 | http://purl.bioontology.org/ontology/ICD10/D84.9 | denotes | immunodeficiency |
GlycoBiology-FMA
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| _T1 | 0-8 | FMAID:167180 | denotes | Antibody |
| _T2 | 24-36 | FMAID:82737 | denotes | carbohydrate |
| _T3 | 24-36 | FMAID:197276 | denotes | carbohydrate |
| _T4 | 48-60 | FMAID:197276 | denotes | Carbohydrate |
| _T5 | 48-60 | FMAID:82737 | denotes | Carbohydrate |
| _T6 | 266-278 | FMAID:82737 | denotes | carbohydrate |
| _T7 | 266-278 | FMAID:197276 | denotes | carbohydrate |
| _T8 | 279-289 | FMAID:167180 | denotes | antibodies |
| _T9 | 504-516 | FMAID:82737 | denotes | carbohydrate |
| _T10 | 504-516 | FMAID:197276 | denotes | carbohydrate |
| _T11 | 517-527 | FMAID:167180 | denotes | antibodies |
| _T12 | 620-633 | FMAID:167256 | denotes | glycoproteins |
| _T13 | 620-633 | FMAID:62925 | denotes | glycoproteins |
| _T14 | 662-673 | FMAID:196773 | denotes | glycolipids |
| _T15 | 662-673 | FMAID:82780 | denotes | glycolipids |
| _T16 | 678-683 | FMAID:256053 | denotes | blood |
| _T17 | 706-714 | FMAID:214710 | denotes | internal |
| _T18 | 737-756 | FMAID:196779 | denotes | lipopolysaccharides |
| _T19 | 737-756 | FMAID:196735 | denotes | lipopolysaccharides |
| _T20 | 737-756 | FMAID:82785 | denotes | lipopolysaccharides |
| _T21 | 737-756 | FMAID:82746 | denotes | lipopolysaccharides |
| _T22 | 783-798 | FMAID:82785 | denotes | polysaccharides |
| _T23 | 783-798 | FMAID:82746 | denotes | polysaccharides |
| _T24 | 783-798 | FMAID:196735 | denotes | polysaccharides |
| _T25 | 783-798 | FMAID:196779 | denotes | polysaccharides |
| _T26 | 803-819 | FMAID:82742 | denotes | oligosaccharides |
| _T27 | 803-819 | FMAID:196731 | denotes | oligosaccharides |
| _T28 | 842-852 | FMAID:167180 | denotes | antibodies |
| _T29 | 907-926 | FMAID:82746 | denotes | homopolysaccharides |
| _T30 | 907-926 | FMAID:196735 | denotes | homopolysaccharides |
uniprot-human
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 636-638 | http://www.uniprot.org/uniprot/Q8SNA0 | denotes | ii |
uniprot-mouse
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 636-638 | http://www.uniprot.org/uniprot/P04441 | denotes | ii |
GlycoBiology-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 145-173 | http://purl.bioontology.org/ontology/NCBITAXON/11676 | denotes | human immunodeficiency virus |
| T2 | 145-173 | http://purl.bioontology.org/ontology/NCBITAXON/11723 | denotes | human immunodeficiency virus |
| T3 | 145-173 | http://purl.bioontology.org/ontology/NCBITAXON/11709 | denotes | human immunodeficiency virus |
| T4 | 145-173 | http://purl.bioontology.org/ontology/NCBITAXON/12721 | denotes | human immunodeficiency virus |
| T5 | 151-173 | http://purl.bioontology.org/ontology/NCBITAXON/11673 | denotes | immunodeficiency virus |
| T6 | 168-173 | http://purl.bioontology.org/ontology/NCBITAXON/184751 | denotes | virus |
| T7 | 227-233 | http://purl.bioontology.org/ontology/NCBITAXON/6754 | denotes | cancer |
| T8 | 684-689 | http://purl.bioontology.org/ontology/STY/T096 | denotes | group |
| T9 | 833-838 | http://purl.bioontology.org/ontology/STY/T096 | denotes | group |
| T10 | 871-880 | http://purl.bioontology.org/ontology/NCBITAXON/809 | denotes | Chlamydia |
| T11 | 871-880 | http://purl.bioontology.org/ontology/NCBITAXON/51291 | denotes | Chlamydia |
| T12 | 871-880 | http://purl.bioontology.org/ontology/NCBITAXON/204428 | denotes | Chlamydia |
| T13 | 871-880 | http://purl.bioontology.org/ontology/NCBITAXON/810 | denotes | Chlamydia |
| T14 | 871-880 | http://purl.bioontology.org/ontology/NCBITAXON/204429 | denotes | Chlamydia |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-8 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | Antibody |
| T2 | 279-289 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
| T3 | 517-527 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
| T4 | 842-852 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 678-683 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
GlyTouCan-IUPAC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| GlycanIUPAC_T1 | 856-859 | "http://rdf.glycoinfo.org/glycan/G91657BL" | denotes | Kdo |
| GlycanIUPAC_T2 | 856-859 | "http://rdf.glycoinfo.org/glycan/G07870IV" | denotes | Kdo |
| GlycanIUPAC_T3 | 856-859 | "http://rdf.glycoinfo.org/glycan/G41755UM" | denotes | Kdo |
| GlycanIUPAC_T4 | 856-859 | "http://rdf.glycoinfo.org/glycan/G51694HC" | denotes | Kdo |
| GlycanIUPAC_T5 | 856-859 | "http://rdf.glycoinfo.org/glycan/G41024ZB" | denotes | Kdo |
| GlycanIUPAC_T6 | 856-859 | "http://rdf.glycoinfo.org/glycan/G56493GV" | denotes | Kdo |
| GlycanIUPAC_T7 | 856-859 | "http://rdf.glycoinfo.org/glycan/G67732AD" | denotes | Kdo |
| GlycanIUPAC_T8 | 856-859 | "http://rdf.glycoinfo.org/glycan/G71637HZ" | denotes | Kdo |
| GlycanIUPAC_T9 | 856-859 | "http://rdf.glycoinfo.org/glycan/G32728TD" | denotes | Kdo |
| GlycanIUPAC_T10 | 856-859 | "http://rdf.glycoinfo.org/glycan/G53466WL" | denotes | Kdo |
| GlycanIUPAC_T11 | 856-859 | "http://rdf.glycoinfo.org/glycan/G66924NS" | denotes | Kdo |
| GlycanIUPAC_T12 | 856-859 | "http://rdf.glycoinfo.org/glycan/G75457JH" | denotes | Kdo |
| GlycanIUPAC_T13 | 856-859 | "http://rdf.glycoinfo.org/glycan/G71084AX" | denotes | Kdo |
| GlycanIUPAC_T14 | 856-859 | "http://rdf.glycoinfo.org/glycan/G07386WM" | denotes | Kdo |
| GlycanIUPAC_T15 | 856-859 | "http://rdf.glycoinfo.org/glycan/G43975HS" | denotes | Kdo |
| GlycanIUPAC_T16 | 856-859 | "http://rdf.glycoinfo.org/glycan/G18466CA" | denotes | Kdo |
| GlycanIUPAC_T17 | 856-859 | "http://rdf.glycoinfo.org/glycan/G08131SX" | denotes | Kdo |
| GlycanIUPAC_T18 | 856-859 | "http://rdf.glycoinfo.org/glycan/G88685HF" | denotes | Kdo |
| GlycanIUPAC_T19 | 856-859 | "http://rdf.glycoinfo.org/glycan/G92956PT" | denotes | Kdo |
| GlycanIUPAC_T20 | 856-859 | "http://rdf.glycoinfo.org/glycan/G98826MO" | denotes | Kdo |
| GlycanIUPAC_T21 | 856-859 | "http://rdf.glycoinfo.org/glycan/G95216FL" | denotes | Kdo |
| GlycanIUPAC_T22 | 856-859 | "http://rdf.glycoinfo.org/glycan/G83786ZO" | denotes | Kdo |
| GlycanIUPAC_T23 | 856-859 | "http://rdf.glycoinfo.org/glycan/G43896QJ" | denotes | Kdo |
| GlycanIUPAC_T24 | 856-859 | "http://rdf.glycoinfo.org/glycan/G76250TH" | denotes | Kdo |
| GlycanIUPAC_T25 | 856-859 | "http://rdf.glycoinfo.org/glycan/G99652IU" | denotes | Kdo |
| GlycanIUPAC_T26 | 856-859 | "http://rdf.glycoinfo.org/glycan/G78740SJ" | denotes | Kdo |
GlycoBiology-MAT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 678-683 | http://purl.obolibrary.org/obo/MAT_0000315 | denotes | blood |
| T2 | 678-683 | http://purl.obolibrary.org/obo/MAT_0000083 | denotes | blood |
GlycoBiology-Motifs
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 678-689 | http://rdf.glycoinfo.org/glycan/G00066MO | denotes | blood group |
performance-test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-UBERON-AE-B_T1 | 678-683 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
mondo_disease
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 123-133 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T2 | 151-167 | Disease | denotes | immunodeficiency | http://purl.obolibrary.org/obo/MONDO_0021094 |
| T3 | 227-233 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T4 | 640-645 | Disease | denotes | tumor | http://purl.obolibrary.org/obo/MONDO_0005070 |
| T5 | 871-880 | Disease | denotes | Chlamydia | http://purl.obolibrary.org/obo/MONDO_0005701 |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 145-150 | OrganismTaxon | denotes | human | 9606 |
| T2 | 871-880 | OrganismTaxon | denotes | Chlamydia | 810 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 606-612 | Body_part | denotes | shield | http://purl.obolibrary.org/obo/UBERON_0003062 |
| T2 | 678-683 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
Anatomy-MAT
| Id | Subject | Object | Predicate | Lexical cue | mat_id |
|---|---|---|---|---|---|
| T1 | 678-683 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/MAT_0000083|http://purl.obolibrary.org/obo/MAT_0000315 |
HP-phenotype
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 151-167 | Phenotype | denotes | immunodeficiency | HP:0002721 |
| T2 | 227-233 | Phenotype | denotes | cancer | HP:0002664 |
| T3 | 640-645 | Phenotype | denotes | tumor | HP:0002664 |