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PubMed:25946186 / 312-549 JSONTXT

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LitCoin-sentences

Id Subject Object Predicate Lexical cue
T5 0-237 Sentence denotes We examined the expression of TIPE2 in lung squamous cancer (LSC), small cell lung cancer and lung adenocarcinoma (AdC) tissues and found that TIPE2 expression was lost in small cell lung cancer, compared with adjacent non-tumor tissues.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
10598 30-35 GeneOrGeneProduct denotes TIPE2 NCBIGene:79626
10599 39-59 DiseaseOrPhenotypicFeature denotes lung squamous cancer MESH:D002289
10600 61-64 DiseaseOrPhenotypicFeature denotes LSC MESH:D002289
10601 67-89 DiseaseOrPhenotypicFeature denotes small cell lung cancer MESH:D055752
10602 94-113 DiseaseOrPhenotypicFeature denotes lung adenocarcinoma MESH:D000077192
10603 115-118 DiseaseOrPhenotypicFeature denotes AdC MESH:D000077192
10604 143-148 GeneOrGeneProduct denotes TIPE2 NCBIGene:79626
10605 172-194 DiseaseOrPhenotypicFeature denotes small cell lung cancer MESH:D055752
10606 223-228 DiseaseOrPhenotypicFeature denotes tumor MESH:D009369

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T6 53-59 DiseaseOrPhenotypicFeature denotes cancer 0004992
T7 78-89 DiseaseOrPhenotypicFeature denotes lung cancer 0008903
T8 83-89 DiseaseOrPhenotypicFeature denotes cancer 0004992
T9 94-113 DiseaseOrPhenotypicFeature denotes lung adenocarcinoma 0005061
T10 99-113 DiseaseOrPhenotypicFeature denotes adenocarcinoma 0004970
T11 183-194 DiseaseOrPhenotypicFeature denotes lung cancer 0008903
T12 188-194 DiseaseOrPhenotypicFeature denotes cancer 0004992

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T8 30-35 GeneOrGeneProduct denotes TIPE2
T9 67-72 GeneOrGeneProduct denotes small
T10 73-77 GeneOrGeneProduct denotes cell
T11 143-148 GeneOrGeneProduct denotes TIPE2
T12 164-168 GeneOrGeneProduct denotes lost
T13 172-177 GeneOrGeneProduct denotes small
T14 178-182 GeneOrGeneProduct denotes cell

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T12 30-35 GeneOrGeneProduct denotes TIPE2
T13 39-43 GeneOrGeneProduct denotes lung
T14 61-64 GeneOrGeneProduct denotes LSC
T15 67-72 GeneOrGeneProduct denotes small
T16 73-77 GeneOrGeneProduct denotes cell
T17 78-82 GeneOrGeneProduct denotes lung
T18 94-98 GeneOrGeneProduct denotes lung
T19 143-148 GeneOrGeneProduct denotes TIPE2
T20 164-168 GeneOrGeneProduct denotes lost
T21 172-177 GeneOrGeneProduct denotes small
T22 178-182 GeneOrGeneProduct denotes cell
T23 183-187 GeneOrGeneProduct denotes lung
T24 223-228 GeneOrGeneProduct denotes tumor

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T5 53-59 DiseaseOrPhenotypicFeature denotes cancer D009369
T6 67-89 DiseaseOrPhenotypicFeature denotes small cell lung cancer D055752
T7 94-113 DiseaseOrPhenotypicFeature denotes lung adenocarcinoma D000077192
T8 115-118 DiseaseOrPhenotypicFeature denotes AdC D000230
T9 172-194 DiseaseOrPhenotypicFeature denotes small cell lung cancer D055752
T10 223-228 DiseaseOrPhenotypicFeature denotes tumor D009369

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T5 30-35 GeneOrGeneProduct denotes TIPE2
T6 143-148 GeneOrGeneProduct denotes TIPE2

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T4 39-43 DiseaseOrPhenotypicFeature denotes lung 0021117
T5 67-89 DiseaseOrPhenotypicFeature denotes small cell lung cancer 0008433
T6 94-113 DiseaseOrPhenotypicFeature denotes lung adenocarcinoma 0005061
T7 115-118 DiseaseOrPhenotypicFeature denotes AdC 0004970
T8 172-194 DiseaseOrPhenotypicFeature denotes small cell lung cancer 0008433
T9 223-228 DiseaseOrPhenotypicFeature denotes tumor 0005070

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T5 53-59 DiseaseOrPhenotypicFeature denotes cancer D009369
T6 61-64 DiseaseOrPhenotypicFeature denotes LSC DISEASE
T7 67-89 DiseaseOrPhenotypicFeature denotes small cell lung cancer D055752
T8 94-113 DiseaseOrPhenotypicFeature denotes lung adenocarcinoma D000077192
T9 115-118 DiseaseOrPhenotypicFeature denotes AdC D000230
T10 172-194 DiseaseOrPhenotypicFeature denotes small cell lung cancer D055752
T11 223-228 DiseaseOrPhenotypicFeature denotes tumor D009369

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T5 53-59 DiseaseOrPhenotypicFeature denotes cancer D009369
T6 61-64 DiseaseOrPhenotypicFeature denotes LSC DISEASE
T7 67-89 DiseaseOrPhenotypicFeature denotes small cell lung cancer D055752
T8 94-113 DiseaseOrPhenotypicFeature denotes lung adenocarcinoma D000077192
T9 115-118 DiseaseOrPhenotypicFeature denotes AdC D000077192
T10 172-194 DiseaseOrPhenotypicFeature denotes small cell lung cancer D055752
T11 223-228 DiseaseOrPhenotypicFeature denotes tumor D009369

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label
T6 143-148 GeneOrGeneProduct denotes TIPE2
T5 30-35 GeneOrGeneProduct denotes TIPE2
T94025 223-228 DiseaseOrPhenotypicFeature denotes tumor D009369
T89794 172-194 DiseaseOrPhenotypicFeature denotes small cell lung cancer D055752
T73020 115-118 DiseaseOrPhenotypicFeature denotes AdC D000077192
T93148 94-113 DiseaseOrPhenotypicFeature denotes lung adenocarcinoma D000077192
T74313 67-89 DiseaseOrPhenotypicFeature denotes small cell lung cancer D055752
T14397 61-64 DiseaseOrPhenotypicFeature denotes LSC DISEASE
T85398 53-59 DiseaseOrPhenotypicFeature denotes cancer D009369

PubmedHPO

Id Subject Object Predicate Lexical cue
T4 53-59 HP_0002664 denotes cancer
T5 67-89 HP_0030357 denotes small cell lung cancer
T6 78-113 HP_0030078 denotes lung cancer and lung adenocarcinoma
T7 78-89 HP_0100526 denotes lung cancer
T8 83-89 HP_0002664 denotes cancer
T9 94-113 HP_0030078 denotes lung adenocarcinoma
T10 172-194 HP_0030357 denotes small cell lung cancer
T11 183-194 HP_0100526 denotes lung cancer
T12 188-194 HP_0002664 denotes cancer
T13 223-228 HP_0002664 denotes tumor