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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-86 Sentence denotes Laparoscopic Double Discoid Resection With a Circular Stapler for Bowel Endometriosis.
TextSentencer_T2 87-103 Sentence denotes STUDY OBJECTIVE:
TextSentencer_T3 104-222 Sentence denotes To demonstrate the technique of laparoscopic double discoid resection with a circular stapler for bowel endometriosis.
TextSentencer_T4 223-230 Sentence denotes DESIGN:
TextSentencer_T5 231-284 Sentence denotes Case report (Canadian Task Force classification III).
TextSentencer_T6 285-293 Sentence denotes SETTING:
TextSentencer_T7 294-339 Sentence denotes Private hospital in Curitiba, Paraná, Brazil.
TextSentencer_T8 340-348 Sentence denotes PATIENT:
TextSentencer_T9 349-491 Sentence denotes A 33-year-old woman was referred to our service complaining about cyclic dysmenorrhea, dyspareunia, chronic pelvic pain, and cyclic dyschezia.
TextSentencer_T10 492-739 Sentence denotes Transvaginal ultrasound with bowel preparation showed a 6-cm endometriotic nodule at the retrocervical area, uterosacral ligaments, posterior vaginal fornix, and anterior rectal wall, infiltrating up to the submucosa, 5 cm far from the anal verge.
TextSentencer_T11 740-754 Sentence denotes INTERVENTIONS:
TextSentencer_T12 755-903 Sentence denotes Under general anesthesia, the patient was placed in the dorsal decubitus position with her arms alongside her body and her lower limbs in abduction.
TextSentencer_T13 904-979 Sentence denotes Pneumoperitoneum was achieved using a Veres needle placed at the umbilicus.
TextSentencer_T14 980-1318 Sentence denotes Four trocars were placed: a 10-mm trocar at the umbilicus for the zero-degree laparoscope; a 5-mm trocar at the right anterosuperior iliac spine; a 5-mm trocar in the midline between the umbilicus and the pubic symphysis, approximately 8 to 10 cm inferior to the umbilical trocar; and a 5-mm trocar at the left anterosuperior iliac spine.
TextSentencer_T15 1319-1451 Sentence denotes The entire pelvis was inspected for endometriotic lesions, and all implants in the anterior compartment of the pelvis were resected.
TextSentencer_T16 1452-1518 Sentence denotes The lesions located at the ovarian fossae were completely removed.
TextSentencer_T17 1519-1603 Sentence denotes The ureters were identified bilaterally, and both para-rectal fossae were dissected.
TextSentencer_T18 1604-1672 Sentence denotes The right hypogastric nerve was released from the disease laterally.
TextSentencer_T19 1673-1861 Sentence denotes The lesion was separated from the retrocervical area, and the posterior vaginal fornix was resected (reverse technique), leaving the disease attached to the anterior surface of the rectum.
TextSentencer_T20 1862-1938 Sentence denotes The lesion was shaved off the anterior rectal wall using a harmonic scalpel.
TextSentencer_T21 1939-2023 Sentence denotes A x-shaped stitch was placed at the anterior rectal wall using 2-0 mononylon suture.
TextSentencer_T22 2024-2159 Sentence denotes A 33-mm circular stapler was placed transanally under laparoscopic control, and once it reached the area to be resected, it was opened.
TextSentencer_T23 2160-2212 Sentence denotes A gap was created between the envil and the stapler.
TextSentencer_T24 2213-2320 Sentence denotes The anterior rectal wall was placed inside this gap with the aid of the stitch at the anterior rectal wall.
TextSentencer_T25 2321-2397 Sentence denotes The stapler was fired, and a piece of the anterior rectal wall was resected.
TextSentencer_T26 2398-2516 Sentence denotes The same procedure was performed using a 29-mm circular stapler, which allowed for the complete removal of the lesion.
TextSentencer_T27 2517-2728 Sentence denotes We usually perform the second discoid resection using a 29-mm circular stapler to allow an easy progression of the stapler through the rectum beyond the first stapler line, so not to put too much pressure on it.
TextSentencer_T28 2729-2932 Sentence denotes In our experience, the first discoid resection removes most of the disease, and the second discoid resection is only needed to remove a small amount of residual disease, along with the first staple line.
TextSentencer_T29 2933-2963 Sentence denotes MEASUREMENTS AND MAIN RESULTS:
TextSentencer_T30 2964-3032 Sentence denotes The procedure took 177 min, and the estimated blood loss was 100 mL.
TextSentencer_T31 3033-3139 Sentence denotes The patient started clear liquids 6 hours after the procedure, and was discharged 19 hours after that [1].
TextSentencer_T32 3140-3273 Sentence denotes Pathological examination of the 2 strips of the anterior rectal wall revealed infiltration of the bowel wall by endometriotic tissue.
TextSentencer_T33 3274-3384 Sentence denotes She had an uneventful postoperative course, and was able to re-start sexual intercourse 50 days after surgery.
TextSentencer_T34 3385-3521 Sentence denotes Between January 2010 and January 2015, 315 women underwent laparoscopic surgery for the treatment of bowel endometriosis in our service.
TextSentencer_T35 3522-3609 Sentence denotes Among them, 16 (5.1%) were operated on by using the double discoid resection technique.
TextSentencer_T36 3610-3695 Sentence denotes Median age of the patients was 34 years, and median body mass index was 25.9 kg/m(2).
TextSentencer_T37 3696-3782 Sentence denotes Median preoperative cancer antigen-125 level was 26.5 U/mL (normal value is <35 U/mL).
TextSentencer_T38 3783-3839 Sentence denotes Median size of the rectosigmoid nodule was 35 mm (range:
TextSentencer_T39 3840-3907 Sentence denotes 30-60), and median distance from the anal verge was 10.5 cm (range:
TextSentencer_T40 3908-3917 Sentence denotes 5-15 cm).
TextSentencer_T41 3918-3958 Sentence denotes Median surgical time was 160 min (range:
TextSentencer_T42 3959-3971 Sentence denotes 54-210 min).
TextSentencer_T43 3972-4131 Sentence denotes Concomitant procedures included hysterectyomy (n = 5), partial cystectomy (n = 3), resection of the posterior vaginal fornix (n = 4), and appendectomy (n = 1).
TextSentencer_T44 4132-4192 Sentence denotes Median estimated intraoperative bleeding was 32.5 mL (range:
TextSentencer_T45 4193-4257 Sentence denotes 30-100), and median time of hospitalization was 19 hours (range:
TextSentencer_T46 4258-4265 Sentence denotes 10-41).
TextSentencer_T47 4266-4322 Sentence denotes Median American Fertility Society score was 46 (10-102).
TextSentencer_T48 4323-4387 Sentence denotes Two minor complications (12.5%) occurred in this initial series:
TextSentencer_T49 4388-4544 Sentence denotes 1 patient required bladder catheterization for urinary retention; and 1 patient developed a urinary tract infection that required oral antibiotic treatment.
TextSentencer_T50 4545-4668 Sentence denotes One major complication (6.2%) was observed; the patient developed fever and abdominal pain on the fourth postoperative day.
TextSentencer_T51 4669-4744 Sentence denotes She was re-operated, and the intraoperative diagnosis was pelviperitonitis.
TextSentencer_T52 4745-4828 Sentence denotes The abdominal cavity was inspected for any dehiscence of the bowel and then washed.
TextSentencer_T53 4829-4914 Sentence denotes She was discharged on the second day after re-operation with oral antibiotic therapy.
TextSentencer_T54 4915-5172 Sentence denotes In our daily practice, we are used to discharging our patients soon in the postoperative setting (19 hours for rectal shaving or discoid resection and 28 hours for segmental bowel resection) [1] because the rate of postoperative fistula seems to be low [2].
TextSentencer_T55 5173-5416 Sentence denotes Because we still have not seen any fistulas after conservative surgery (rectal shaving, discoid resection, and double discoid resection), we usually prefer to perform this type of surgery compared with segmental bowel resection, when possible.
TextSentencer_T56 5417-5429 Sentence denotes CONCLUSIONS:
TextSentencer_T57 5430-5587 Sentence denotes Laparoscopic double discoid resection with circular stapler may be an alternative to segmental bowel resection in selected patients with bowel endometriosis.
T1 0-86 Sentence denotes Laparoscopic Double Discoid Resection With a Circular Stapler for Bowel Endometriosis.
T2 87-103 Sentence denotes STUDY OBJECTIVE:
T3 104-222 Sentence denotes To demonstrate the technique of laparoscopic double discoid resection with a circular stapler for bowel endometriosis.
T4 223-230 Sentence denotes DESIGN:
T5 231-284 Sentence denotes Case report (Canadian Task Force classification III).
T6 285-293 Sentence denotes SETTING:
T7 294-339 Sentence denotes Private hospital in Curitiba, Paraná, Brazil.
T8 340-348 Sentence denotes PATIENT:
T9 349-491 Sentence denotes A 33-year-old woman was referred to our service complaining about cyclic dysmenorrhea, dyspareunia, chronic pelvic pain, and cyclic dyschezia.
T10 492-739 Sentence denotes Transvaginal ultrasound with bowel preparation showed a 6-cm endometriotic nodule at the retrocervical area, uterosacral ligaments, posterior vaginal fornix, and anterior rectal wall, infiltrating up to the submucosa, 5 cm far from the anal verge.
T11 740-754 Sentence denotes INTERVENTIONS:
T12 755-903 Sentence denotes Under general anesthesia, the patient was placed in the dorsal decubitus position with her arms alongside her body and her lower limbs in abduction.
T13 904-979 Sentence denotes Pneumoperitoneum was achieved using a Veres needle placed at the umbilicus.
T14 980-1318 Sentence denotes Four trocars were placed: a 10-mm trocar at the umbilicus for the zero-degree laparoscope; a 5-mm trocar at the right anterosuperior iliac spine; a 5-mm trocar in the midline between the umbilicus and the pubic symphysis, approximately 8 to 10 cm inferior to the umbilical trocar; and a 5-mm trocar at the left anterosuperior iliac spine.
T15 1319-1451 Sentence denotes The entire pelvis was inspected for endometriotic lesions, and all implants in the anterior compartment of the pelvis were resected.
T16 1452-1518 Sentence denotes The lesions located at the ovarian fossae were completely removed.
T17 1519-1603 Sentence denotes The ureters were identified bilaterally, and both para-rectal fossae were dissected.
T18 1604-1672 Sentence denotes The right hypogastric nerve was released from the disease laterally.
T19 1673-1861 Sentence denotes The lesion was separated from the retrocervical area, and the posterior vaginal fornix was resected (reverse technique), leaving the disease attached to the anterior surface of the rectum.
T20 1862-1938 Sentence denotes The lesion was shaved off the anterior rectal wall using a harmonic scalpel.
T21 1939-2023 Sentence denotes A x-shaped stitch was placed at the anterior rectal wall using 2-0 mononylon suture.
T22 2024-2159 Sentence denotes A 33-mm circular stapler was placed transanally under laparoscopic control, and once it reached the area to be resected, it was opened.
T23 2160-2212 Sentence denotes A gap was created between the envil and the stapler.
T24 2213-2320 Sentence denotes The anterior rectal wall was placed inside this gap with the aid of the stitch at the anterior rectal wall.
T25 2321-2397 Sentence denotes The stapler was fired, and a piece of the anterior rectal wall was resected.
T26 2398-2516 Sentence denotes The same procedure was performed using a 29-mm circular stapler, which allowed for the complete removal of the lesion.
T27 2517-2728 Sentence denotes We usually perform the second discoid resection using a 29-mm circular stapler to allow an easy progression of the stapler through the rectum beyond the first stapler line, so not to put too much pressure on it.
T28 2729-2932 Sentence denotes In our experience, the first discoid resection removes most of the disease, and the second discoid resection is only needed to remove a small amount of residual disease, along with the first staple line.
T29 2933-2963 Sentence denotes MEASUREMENTS AND MAIN RESULTS:
T30 2964-3032 Sentence denotes The procedure took 177 min, and the estimated blood loss was 100 mL.
T31 3033-3139 Sentence denotes The patient started clear liquids 6 hours after the procedure, and was discharged 19 hours after that [1].
T32 3140-3273 Sentence denotes Pathological examination of the 2 strips of the anterior rectal wall revealed infiltration of the bowel wall by endometriotic tissue.
T33 3274-3384 Sentence denotes She had an uneventful postoperative course, and was able to re-start sexual intercourse 50 days after surgery.
T34 3385-3521 Sentence denotes Between January 2010 and January 2015, 315 women underwent laparoscopic surgery for the treatment of bowel endometriosis in our service.
T35 3522-3609 Sentence denotes Among them, 16 (5.1%) were operated on by using the double discoid resection technique.
T36 3610-3695 Sentence denotes Median age of the patients was 34 years, and median body mass index was 25.9 kg/m(2).
T37 3696-3782 Sentence denotes Median preoperative cancer antigen-125 level was 26.5 U/mL (normal value is <35 U/mL).
T38 3783-3839 Sentence denotes Median size of the rectosigmoid nodule was 35 mm (range:
T39 3840-3907 Sentence denotes 30-60), and median distance from the anal verge was 10.5 cm (range:
T40 3908-3917 Sentence denotes 5-15 cm).
T41 3918-3958 Sentence denotes Median surgical time was 160 min (range:
T42 3959-3971 Sentence denotes 54-210 min).
T43 3972-4131 Sentence denotes Concomitant procedures included hysterectyomy (n = 5), partial cystectomy (n = 3), resection of the posterior vaginal fornix (n = 4), and appendectomy (n = 1).
T44 4132-4192 Sentence denotes Median estimated intraoperative bleeding was 32.5 mL (range:
T45 4193-4257 Sentence denotes 30-100), and median time of hospitalization was 19 hours (range:
T46 4258-4265 Sentence denotes 10-41).
T47 4266-4322 Sentence denotes Median American Fertility Society score was 46 (10-102).
T48 4323-4387 Sentence denotes Two minor complications (12.5%) occurred in this initial series:
T49 4388-4544 Sentence denotes 1 patient required bladder catheterization for urinary retention; and 1 patient developed a urinary tract infection that required oral antibiotic treatment.
T50 4545-4668 Sentence denotes One major complication (6.2%) was observed; the patient developed fever and abdominal pain on the fourth postoperative day.
T51 4669-4744 Sentence denotes She was re-operated, and the intraoperative diagnosis was pelviperitonitis.
T52 4745-4828 Sentence denotes The abdominal cavity was inspected for any dehiscence of the bowel and then washed.
T53 4829-4914 Sentence denotes She was discharged on the second day after re-operation with oral antibiotic therapy.
T54 4915-5172 Sentence denotes In our daily practice, we are used to discharging our patients soon in the postoperative setting (19 hours for rectal shaving or discoid resection and 28 hours for segmental bowel resection) [1] because the rate of postoperative fistula seems to be low [2].
T55 5173-5416 Sentence denotes Because we still have not seen any fistulas after conservative surgery (rectal shaving, discoid resection, and double discoid resection), we usually prefer to perform this type of surgery compared with segmental bowel resection, when possible.
T56 5417-5429 Sentence denotes CONCLUSIONS:
T57 5430-5587 Sentence denotes Laparoscopic double discoid resection with circular stapler may be an alternative to segmental bowel resection in selected patients with bowel endometriosis.

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 613-622 http://purl.obolibrary.org/obo/UBERON_0000211 denotes ligaments
PD-UBERON-AE-B_T2 699-708 http://purl.obolibrary.org/obo/UBERON_0000009 denotes submucosa
PD-UBERON-AE-B_T3 846-850 http://purl.obolibrary.org/obo/UBERON_0001460 denotes arms
PD-UBERON-AE-B_T4 884-889 http://purl.obolibrary.org/obo/UBERON_0002101 denotes limbs
PD-UBERON-AE-B_T5 969-978 http://purl.obolibrary.org/obo/UBERON_0007118 denotes umbilicus
PD-UBERON-AE-B_T6 1028-1037 http://purl.obolibrary.org/obo/UBERON_0007118 denotes umbilicus
PD-UBERON-AE-B_T7 1167-1176 http://purl.obolibrary.org/obo/UBERON_0007118 denotes umbilicus
PD-UBERON-AE-B_T8 1113-1124 http://purl.obolibrary.org/obo/UBERON_0013707 denotes iliac spine
PD-UBERON-AE-B_T9 1306-1317 http://purl.obolibrary.org/obo/UBERON_0013707 denotes iliac spine
PD-UBERON-AE-B_T10 1185-1200 http://purl.obolibrary.org/obo/UBERON_0003699 denotes pubic symphysis
PD-UBERON-AE-B_T11 1191-1200 http://purl.obolibrary.org/obo/UBERON_0002216 denotes symphysis
PD-UBERON-AE-B_T12 1479-1493 http://purl.obolibrary.org/obo/UBERON_0016883 denotes ovarian fossae
PD-UBERON-AE-B_T13 1523-1530 http://purl.obolibrary.org/obo/UBERON_0000056 denotes ureters
PD-UBERON-AE-B_T14 1614-1631 http://purl.obolibrary.org/obo/UBERON_0005303 denotes hypogastric nerve
PD-UBERON-AE-B_T15 1626-1631 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve
PD-UBERON-AE-B_T16 1854-1860 http://purl.obolibrary.org/obo/UBERON_0001052 denotes rectum
PD-UBERON-AE-B_T17 2652-2658 http://purl.obolibrary.org/obo/UBERON_0001052 denotes rectum
PD-UBERON-AE-B_T18 2016-2022 http://purl.obolibrary.org/obo/UBERON_4200215 denotes suture
PD-UBERON-AE-B_T19 3010-3015 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T20 3266-3272 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
PD-UBERON-AE-B_T21 4749-4765 http://purl.obolibrary.org/obo/UBERON_0003684 denotes abdominal cavity

PubCasesHPO

Id Subject Object Predicate Lexical cue
TI1 72-85 HP:0030127 denotes Endometriosis
AB1 208-221 HP:0030127 denotes endometriosis
AB2 422-434 HP:0100607 denotes dysmenorrhea
AB3 436-447 HP:0030016 denotes dyspareunia
AB4 464-468 HP:0012531 denotes pain
AB5 3492-3505 HP:0030127 denotes endometriosis
AB6 4435-4452 HP:0000016 denotes urinary retention
AB7 4611-4616 HP:0001945 denotes fever
AB8 4621-4635 HP:0002027 denotes abdominal pain
AB9 5573-5586 HP:0030127 denotes endometriosis

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 884-889 http://purl.obolibrary.org/obo/UBERON_0002101 denotes limbs
PD-UBERON-AE-B_T2 3010-3015 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T3 1626-1631 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve
PD-UBERON-AE-B_T4 3266-3272 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
PD-UBERON-AE-B_T5 846-850 http://purl.obolibrary.org/obo/UBERON_0001460 denotes arms
PD-UBERON-AE-B_T6 613-622 http://purl.obolibrary.org/obo/UBERON_0000211 denotes ligaments
PD-UBERON-AE-B_T7 699-708 http://purl.obolibrary.org/obo/UBERON_0000009 denotes submucosa
PD-UBERON-AE-B_T8 969-978 http://purl.obolibrary.org/obo/UBERON_0007118 denotes umbilicus
PD-UBERON-AE-B_T9 1028-1037 http://purl.obolibrary.org/obo/UBERON_0007118 denotes umbilicus
PD-UBERON-AE-B_T10 1167-1176 http://purl.obolibrary.org/obo/UBERON_0007118 denotes umbilicus
PD-UBERON-AE-B_T11 1098-1124 http://purl.obolibrary.org/obo/UBERON_0013708 denotes anterosuperior iliac spine
PD-UBERON-AE-B_T12 1291-1317 http://purl.obolibrary.org/obo/UBERON_0013708 denotes anterosuperior iliac spine
PD-UBERON-AE-B_T13 1113-1124 http://purl.obolibrary.org/obo/UBERON_0013707 denotes iliac spine
PD-UBERON-AE-B_T14 1306-1317 http://purl.obolibrary.org/obo/UBERON_0013707 denotes iliac spine
PD-UBERON-AE-B_T15 1185-1200 http://purl.obolibrary.org/obo/UBERON_0003699 denotes pubic symphysis
PD-UBERON-AE-B_T16 1191-1200 http://purl.obolibrary.org/obo/UBERON_0002216 denotes symphysis
PD-UBERON-AE-B_T17 1479-1493 http://purl.obolibrary.org/obo/UBERON_0016883 denotes ovarian fossae
PD-UBERON-AE-B_T18 1523-1530 http://purl.obolibrary.org/obo/UBERON_0000056 denotes ureters
PD-UBERON-AE-B_T19 1614-1631 http://purl.obolibrary.org/obo/UBERON_0005303 denotes hypogastric nerve
PD-UBERON-AE-B_T20 1854-1860 http://purl.obolibrary.org/obo/UBERON_0001052 denotes rectum
PD-UBERON-AE-B_T21 2652-2658 http://purl.obolibrary.org/obo/UBERON_0001052 denotes rectum
PD-UBERON-AE-B_T22 2016-2022 http://purl.obolibrary.org/obo/UBERON_4200215 denotes suture
PD-UBERON-AE-B_T23 4749-4765 http://purl.obolibrary.org/obo/UBERON_0003684 denotes abdominal cavity

PubCasesORDO

Id Subject Object Predicate Lexical cue
AB1 2337-2342 ORDO:163703 denotes fired